CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 219482 334317 39.63 553799 2 201126 351741 36.38 552867 3 175570 305943 36.46 481513 4 169286 227650 42.65 396936 5 159179 188946 45.72 348125 6 157645 161130 49.45 318775 7 173267 154466 52.87 327733 8 81845 177427 31.57 259272 9 73298 161114 31.27 234412 10 73793 153419 32.48 227212 11 75973 155450 32.83 231423 12 72580 160920 31.08 233500 13 71821 166129 30.18 237950 14 66866 163445 29.03 230311 15 64838 165995 28.09 230833 16 59862 162844 26.88 222706 17 56593 157601 26.42 214194 18 58041 159479 26.68 217520 19 57562 162167 26.20 219729 20 58643 164135 26.32 222778 21 59481 165720 26.41 225201 22 57946 164113 26.09 222059 23 57241 161430 26.18 218671 24 56278 161896 25.80 218174 25 55124 160675 25.54 215799 26 55304 157476 25.99 212780 27 54727 161882 25.27 216609 28 57452 160658 26.34 218110 29 55333 166306 24.97 221639 30 54456 161854 25.17 216310 31 54818 158462 25.70 213280 32 53975 155060 25.82 209035 33 54262 155693 25.84 209955 34 54916 155677 26.08 210593 35 53613 154166 25.80 207779 36 53323 155784 25.50 209107 37 52224 153137 25.43 205361 38 51593 153871 25.11 205464 39 53111 155230 25.49 208341 40 54303 153306 26.16 207609 41 53872 154011 25.91 207883 42 54310 155491 25.89 209801 43 53413 153928 25.76 207341 44 53297 152460 25.90 205757 45 53656 151278 26.18 204934 46 54448 153143 26.23 207591 47 54289 150990 26.45 205279 48 53919 150742 26.35 204661 49 54586 151294 26.51 205880 50 52399 153443 25.46 205842 51 53459 153426 25.84 206885 52 52917 158808 24.99 211725 53 51833 151063 25.55 202896 54 50626 149057 25.35 199683 55 50134 145424 25.64 195558 56 49890 142803 25.89 192693 57 50247 144532 25.80 194779 58 50733 143961 26.06 194694 59 50767 143636 26.11 194403 60 49102 144101 25.41 193203 61 50064 142630 25.98 192694 62 49210 144603 25.39 193813 63 48207 142963 25.22 191170 64 48173 142685 25.24 190858 65 48256 139375 25.72 187631 66 49061 140244 25.92 189305 67 48276 138189 25.89 186465 68 47470 137506 25.66 184976 69 46534 135871 25.51 182405 70 46749 135608 25.64 182357 71 45826 134528 25.41 180354 72 46223 133493 25.72 179716 73 44996 132127 25.40 177123 74 45159 130623 25.69 175782 75 43416 130046 25.03 173462 76 43915 128399 25.49 172314 77 44206 128271 25.63 172477 78 43802 128531 25.42 172333 79 43296 127558 25.34 170854 80 42382 126910 25.03 169292 81 42065 125821 25.06 167886 82 40746 124117 24.72 164863 83 42139 124577 25.28 166716 84 41999 125280 25.11 167279 85 41677 123478 25.24 165155 86 40656 121210 25.12 161866 87 39760 120928 24.74 160688 88 39901 121060 24.79 160961 89 38864 118829 24.65 157693 90 39622 117921 25.15 157543 91 38526 117590 24.68 156116 92 38312 115987 24.83 154299 93 37748 116327 24.50 154075 94 38418 114473 25.13 152891 95 37739 114555 24.78 152294 96 37993 116375 24.61 154368 97 36290 111344 24.58 147634 98 33873 104983 24.39 138856 99 26628 82380 24.43 109008 100 35320 105229 25.13 140549 101 32410 102735 23.98 135145 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 295858 326812 47.51 622670 2 177141 288585 38.04 465726 3 71786 284458 20.15 356244 4 31248 296247 9.54 327495 5 17977 275235 6.13 293212 6 14414 271027 5.05 285441 7 10136 339006 2.90 349142 8 4260 365651 1.15 369911 9 3613 338038 1.06 341651 10 3518 322624 1.08 326142 11 3616 324200 1.10 327816 12 3533 326063 1.07 329596 13 3019 310632 0.96 313651 14 2759 310195 0.88 312954 15 2602 315601 0.82 318203 16 2524 317092 0.79 319616 17 2313 313590 0.73 315903 18 2314 312829 0.73 315143 19 2239 311596 0.71 313835 20 2232 326884 0.68 329116 21 2267 331940 0.68 334207 22 2357 328404 0.71 330761 23 2292 331729 0.69 334021 24 2250 333566 0.67 335816 25 2320 323570 0.71 325890 26 2375 326272 0.72 328647 27 2314 329553 0.70 331867 28 2205 328757 0.67 330962 29 2309 331039 0.69 333348 30 2312 335436 0.68 337748 31 2332 328659 0.70 330991 32 2339 329070 0.71 331409 33 2363 329577 0.71 331940 34 2364 323246 0.73 325610 35 2429 326880 0.74 329309 36 2366 327383 0.72 329749 37 2391 319630 0.74 322021 38 2390 324292 0.73 326682 39 2388 322261 0.74 324649 40 2406 319138 0.75 321544 41 2409 318772 0.75 321181 42 2371 320377 0.73 322748 43 2383 317831 0.74 320214 44 2413 322138 0.74 324551 45 2524 319828 0.78 322352 46 2500 316863 0.78 319363 47 2527 316391 0.79 318918 48 2495 320714 0.77 323209 49 2453 315209 0.77 317662 50 2731 316574 0.86 319305 51 2576 317824 0.80 320400 52 2701 316183 0.85 318884 53 2633 314602 0.83 317235 54 2728 316111 0.86 318839 55 2519 311033 0.80 313552 56 2650 314645 0.84 317295 57 2635 313079 0.83 315714 58 3038 309338 0.97 312376 59 2678 311154 0.85 313832 60 2712 312800 0.86 315512 61 2762 309796 0.88 312558 62 2907 311957 0.92 314864 63 2706 307341 0.87 310047 64 2864 308829 0.92 311693 65 2884 305328 0.94 308212 66 2814 301278 0.93 304092 67 2734 293400 0.92 296134 68 2918 296530 0.97 299448 69 2779 295629 0.93 298408 70 2892 291690 0.98 294582 71 2772 290789 0.94 293561 72 2722 289427 0.93 292149 73 2782 284934 0.97 287716 74 2774 283710 0.97 286484 75 2754 284653 0.96 287407 76 2726 277598 0.97 280324 77 2731 278824 0.97 281555 78 2618 276761 0.94 279379 79 2660 271750 0.97 274410 80 2554 269741 0.94 272295 81 2687 267876 0.99 270563 82 2609 263813 0.98 266422 83 2689 268802 0.99 271491 84 2553 267535 0.95 270088 85 2729 263036 1.03 265765 86 2662 266794 0.99 269456 87 2626 264764 0.98 267390 88 2745 259056 1.05 261801 89 2766 257482 1.06 260248 90 2695 258677 1.03 261372 91 2805 254491 1.09 257296 92 2790 255008 1.08 257798 93 2991 252622 1.17 255613 94 2921 248218 1.16 251139 95 2790 247786 1.11 250576 96 3003 244563 1.21 247566 97 2799 223919 1.23 226718 98 2462 205628 1.18 208090 99 1656 132398 1.24 134054 100 1744 134996 1.28 136740 101 3674 220606 1.64 224280 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 245218 367387 40.03 612605 2 109659 383299 22.25 492958 3 48033 501577 8.74 549610 4 36192 552978 6.14 589170 5 31531 661283 4.55 692814 6 24730 733018 3.26 757748 7 23103 931554 2.42 954657 8 12322 1002331 1.21 1014653 9 9927 915378 1.07 925305 10 9567 900082 1.05 909649 11 10227 898002 1.13 908229 12 9355 917436 1.01 926791 13 9598 935873 1.02 945471 14 9933 961247 1.02 971180 15 9039 985408 0.91 994447 16 8956 1006767 0.88 1015723 17 9382 1012135 0.92 1021517 18 8801 1049555 0.83 1058356 19 8886 1071875 0.82 1080761 20 9574 1104174 0.86 1113748 21 8709 1109154 0.78 1117863 22 9122 1109912 0.82 1119034 23 9849 1115039 0.88 1124888 24 8915 1115125 0.79 1124040 25 9275 1124000 0.82 1133275 26 9685 1132488 0.85 1142173 27 8991 1136776 0.78 1145767 28 8979 1134792 0.79 1143771 29 9887 1129868 0.87 1139755 30 9071 1118096 0.80 1127167 31 9083 1101332 0.82 1110415 32 9511 1109223 0.85 1118734 33 8866 1104149 0.80 1113015 34 9515 1110170 0.85 1119685 35 9778 1100538 0.88 1110316 36 8994 1109666 0.80 1118660 37 9015 1103350 0.81 1112365 38 9472 1104634 0.85 1114106 39 8805 1098282 0.80 1107087 40 9027 1100492 0.81 1109519 41 9872 1105338 0.89 1115210 42 9214 1114926 0.82 1124140 43 9273 1099021 0.84 1108294 44 9779 1103106 0.88 1112885 45 9184 1092911 0.83 1102095 46 9260 1094522 0.84 1103782 47 9790 1086758 0.89 1096548 48 8831 1089124 0.80 1097955 49 9038 1071700 0.84 1080738 50 9611 1066331 0.89 1075942 51 8873 1056891 0.83 1065764 52 9210 1053276 0.87 1062486 53 9543 1045755 0.90 1055298 54 9018 1046019 0.85 1055037 55 9147 1047907 0.87 1057054 56 9459 1043600 0.90 1053059 57 8936 1057379 0.84 1066315 58 10097 1045177 0.96 1055274 59 9675 1056382 0.91 1066057 60 8864 1038770 0.85 1047634 61 8969 1037159 0.86 1046128 62 9531 1026833 0.92 1036364 63 8783 1017885 0.86 1026668 64 9248 1011687 0.91 1020935 65 9500 1013725 0.93 1023225 66 8825 1005926 0.87 1014751 67 8875 1001655 0.88 1010530 68 9422 996918 0.94 1006340 69 8630 990600 0.86 999230 70 8616 988980 0.86 997596 71 9290 981943 0.94 991233 72 8556 976717 0.87 985273 73 9046 964581 0.93 973627 74 9108 964790 0.94 973898 75 8436 960587 0.87 969023 76 8552 955618 0.89 964170 77 8920 950079 0.93 958999 78 8079 941187 0.85 949266 79 8364 936526 0.89 944890 80 8893 930101 0.95 938994 81 8005 920545 0.86 928550 82 8370 911568 0.91 919938 83 8733 912992 0.95 921725 84 7952 902660 0.87 910612 85 8015 894478 0.89 902493 86 8325 888280 0.93 896605 87 7961 884018 0.89 891979 88 7802 880246 0.88 888048 89 8357 872307 0.95 880664 90 7640 867506 0.87 875146 91 7895 856781 0.91 864676 92 8273 856955 0.96 865228 93 7730 847550 0.90 855280 94 7788 839564 0.92 847352 95 8063 829755 0.96 837818 96 7377 813408 0.90 820785 97 7396 793132 0.92 800528 98 7405 734930 1.00 742335 99 4905 506770 0.96 511675 100 5247 454035 1.14 459282 101 7750 740691 1.04 748441 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 113774 145970 43.80 259744 2 100093 130738 43.36 230831 3 109488 147812 42.55 257300 4 102775 165549 38.30 268324 5 45120 205389 18.01 250509 6 25889 110697 18.95 136586 7 24029 119363 16.76 143392 8 25613 110180 18.86 135793 9 23250 99203 18.99 122453 10 25830 108463 19.23 134293 11 27069 105340 20.44 132409 12 26686 101294 20.85 127980 13 27455 100064 21.53 127519 14 27688 100372 21.62 128060 15 27054 93369 22.47 120423 16 26859 90945 22.80 117804 17 31831 100072 24.13 131903 18 30819 94495 24.59 125314 19 28608 90764 23.97 119372 20 27528 89023 23.62 116551 21 29094 87945 24.86 117039 22 28414 89046 24.19 117460 23 26963 85765 23.92 112728 24 25640 81641 23.90 107281 25 27801 87689 24.07 115490 26 26359 83875 23.91 110234 27 27965 84242 24.92 112207 28 27018 82464 24.68 109482 29 27245 84254 24.44 111499 30 25790 79118 24.58 104908 31 24873 79066 23.93 103939 32 24302 74816 24.52 99118 33 25963 75904 25.49 101867 34 25523 77934 24.67 103457 35 30358 82029 27.01 112387 36 26538 75582 25.99 102120 37 26450 77150 25.53 103600 38 24024 73902 24.53 97926 39 24952 72706 25.55 97658 40 25960 74434 25.86 100394 41 23676 71652 24.84 95328 42 23707 72374 24.67 96081 43 24331 72099 25.23 96430 44 22832 70150 24.56 92982 45 27282 72857 27.24 100139 46 22255 65390 25.39 87645 47 22410 66065 25.33 88475 48 21884 65631 25.01 87515 49 21636 65764 24.76 87400 50 20853 63268 24.79 84121 51 20974 62078 25.25 83052 52 20763 63461 24.65 84224 53 21163 60754 25.83 81917 54 20725 61256 25.28 81981 55 20850 61825 25.22 82675 56 19894 59876 24.94 79770 57 20265 58225 25.82 78490 58 19662 58323 25.21 77985 59 19273 56440 25.46 75713 60 20035 56464 26.19 76499 61 17804 54905 24.49 72709 62 18062 55346 24.60 73408 63 19112 54532 25.95 73644 64 18438 54181 25.39 72619 65 17609 50650 25.80 68259 66 18370 52665 25.86 71035 67 17252 52190 24.84 69442 68 18371 52507 25.92 70878 69 16775 49583 25.28 66358 70 16658 49690 25.11 66348 71 16922 47940 26.09 64862 72 16322 47488 25.58 63810 73 16407 48388 25.32 64795 74 15035 46049 24.61 61084 75 15117 45459 24.96 60576 76 15300 45043 25.36 60343 77 14874 44967 24.86 59841 78 15279 45028 25.34 60307 79 14666 44376 24.84 59042 80 14035 43418 24.43 57453 81 14005 42829 24.64 56834 82 14030 42882 24.65 56912 83 14137 41742 25.30 55879 84 14864 43985 25.26 58849 85 13647 41492 24.75 55139 86 13474 41229 24.63 54703 87 13172 39270 25.12 52442 88 13182 38834 25.34 52016 89 13461 39584 25.38 53045 90 13463 38400 25.96 51863 91 13214 38427 25.59 51641 92 12447 37478 24.93 49925 93 12361 37639 24.72 50000 94 12515 37279 25.13 49794 95 12550 37292 25.18 49842 96 12355 36678 25.20 49033 97 12504 37496 25.01 50000 98 11655 33692 25.70 45347 99 10324 0 100.00 10324 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 38531 201097 16.08 239628 2 39238 202335 16.24 241573 3 36766 207141 15.07 243907 4 39762 211831 15.80 251593 5 2720 389822 0.69 392542 6 2046 467843 0.44 469889 7 1328 255192 0.52 256520 8 1348 270254 0.50 271602 9 1114 232629 0.48 233743 10 1212 224306 0.54 225518 11 1504 280180 0.53 281684 12 1253 234927 0.53 236180 13 1260 232645 0.54 233905 14 1289 227981 0.56 229270 15 1224 214025 0.57 215249 16 1147 201526 0.57 202673 17 1277 215572 0.59 216849 18 1287 194214 0.66 195501 19 1168 190787 0.61 191955 20 1144 188449 0.60 189593 21 1223 184077 0.66 185300 22 1192 194151 0.61 195343 23 1098 193341 0.56 194439 24 1049 177052 0.59 178101 25 1141 181924 0.62 183065 26 1148 186264 0.61 187412 27 1097 175758 0.62 176855 28 1021 167058 0.61 168079 29 1090 174812 0.62 175902 30 1044 174731 0.59 175775 31 999 166106 0.60 167105 32 1033 170165 0.60 171198 33 1097 189081 0.58 190178 34 951 165614 0.57 166565 35 1026 168995 0.60 170021 36 1047 168327 0.62 169374 37 916 156922 0.58 157838 38 914 160089 0.57 161003 39 898 154554 0.58 155452 40 915 152071 0.60 152986 41 984 148869 0.66 149853 42 904 142199 0.63 143103 43 859 143233 0.60 144092 44 923 146188 0.63 147111 45 853 137571 0.62 138424 46 854 138185 0.61 139039 47 922 141599 0.65 142521 48 898 135529 0.66 136427 49 869 137253 0.63 138122 50 852 135752 0.62 136604 51 807 128397 0.62 129204 52 752 127207 0.59 127959 53 839 141860 0.59 142699 54 798 130069 0.61 130867 55 769 126410 0.60 127179 56 777 129588 0.60 130365 57 761 123263 0.61 124024 58 642 119522 0.53 120164 59 772 125076 0.61 125848 60 789 118648 0.66 119437 61 759 119430 0.63 120189 62 779 119545 0.65 120324 63 799 118407 0.67 119206 64 683 113294 0.60 113977 65 682 116067 0.58 116749 66 649 109403 0.59 110052 67 713 114462 0.62 115175 68 657 111419 0.59 112076 69 667 112016 0.59 112683 70 694 110282 0.63 110976 71 686 110834 0.62 111520 72 640 104924 0.61 105564 73 653 103528 0.63 104181 74 644 107481 0.60 108125 75 575 103586 0.55 104161 76 596 98677 0.60 99273 77 676 102806 0.65 103482 78 569 97575 0.58 98144 79 569 97225 0.58 97794 80 598 95253 0.62 95851 81 565 91658 0.61 92223 82 562 91414 0.61 91976 83 592 91428 0.64 92020 84 539 88839 0.60 89378 85 577 93349 0.61 93926 86 568 88294 0.64 88862 87 509 87214 0.58 87723 88 453 84154 0.54 84607 89 552 86871 0.63 87423 90 579 84941 0.68 85520 91 526 86245 0.61 86771 92 513 84133 0.61 84646 93 573 80782 0.70 81355 94 486 79677 0.61 80163 95 525 81761 0.64 82286 96 475 77884 0.61 78359 97 475 76855 0.61 77330 98 424 74905 0.56 75329 99 311 0 100.00 311 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 51173 278988 15.50 330161 2 41637 233880 15.11 275517 3 42457 240356 15.01 282813 4 42637 233448 15.44 276085 5 4254 446387 0.94 450641 6 4217 622943 0.67 627160 7 4973 833302 0.59 838275 8 5129 826863 0.62 831992 9 5115 778540 0.65 783655 10 4977 799663 0.62 804640 11 5117 781090 0.65 786207 12 5273 730989 0.72 736262 13 5088 750135 0.67 755223 14 5006 752388 0.66 757394 15 5178 759933 0.68 765111 16 4896 726723 0.67 731619 17 5069 725335 0.69 730404 18 5192 720384 0.72 725576 19 4661 679415 0.68 684076 20 4840 704403 0.68 709243 21 4706 676173 0.69 680879 22 4507 658758 0.68 663265 23 4556 647539 0.70 652095 24 4341 624290 0.69 628631 25 4473 624457 0.71 628930 26 4357 620924 0.70 625281 27 4801 652202 0.73 657003 28 4381 624779 0.70 629160 29 4235 613580 0.69 617815 30 4380 598300 0.73 602680 31 4248 593837 0.71 598085 32 4051 581904 0.69 585955 33 4232 572275 0.73 576507 34 4192 566350 0.73 570542 35 4617 581248 0.79 585865 36 4134 571802 0.72 575936 37 4084 570722 0.71 574806 38 4317 590505 0.73 594822 39 4003 550024 0.72 554027 40 3967 565700 0.70 569667 41 3879 542774 0.71 546653 42 3958 548416 0.72 552374 43 3831 527595 0.72 531426 44 3817 526432 0.72 530249 45 3912 528558 0.73 532470 46 3805 530226 0.71 534031 47 3660 520821 0.70 524481 48 3791 512056 0.73 515847 49 3619 515847 0.70 519466 50 3658 507709 0.72 511367 51 3542 497811 0.71 501353 52 3396 476613 0.71 480009 53 3387 474323 0.71 477710 54 3311 465420 0.71 468731 55 3378 473493 0.71 476871 56 3316 464261 0.71 467577 57 3399 472383 0.71 475782 58 3181 458830 0.69 462011 59 3114 444720 0.70 447834 60 3308 456303 0.72 459611 61 3074 440251 0.69 443325 62 3058 437567 0.69 440625 63 3029 433341 0.69 436370 64 2997 421530 0.71 424527 65 2919 422362 0.69 425281 66 2962 409592 0.72 412554 67 2873 408970 0.70 411843 68 2914 419862 0.69 422776 69 2918 406712 0.71 409630 70 2763 397054 0.69 399817 71 2731 394783 0.69 397514 72 2697 390121 0.69 392818 73 2768 387745 0.71 390513 74 2686 388021 0.69 390707 75 2709 384270 0.70 386979 76 2519 374419 0.67 376938 77 2667 369094 0.72 371761 78 2581 369285 0.69 371866 79 2551 372413 0.68 374964 80 2517 360108 0.69 362625 81 2663 356891 0.74 359554 82 2549 354464 0.71 357013 83 2459 350483 0.70 352942 84 2522 347463 0.72 349985 85 2437 342068 0.71 344505 86 2377 341639 0.69 344016 87 2416 336226 0.71 338642 88 2297 329405 0.69 331702 89 2308 327204 0.70 329512 90 2408 324937 0.74 327345 91 2255 324410 0.69 326665 92 2228 320531 0.69 322759 93 2244 316222 0.70 318466 94 2207 308895 0.71 311102 95 2271 307140 0.73 309411 96 2116 299783 0.70 301899 97 2074 298240 0.69 300314 98 1691 283067 0.59 284758 99 1198 0 100.00 1198