CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 53894 116035 31.72 169929 2 54816 112723 32.72 167539 3 57738 116572 33.12 174310 4 55615 115019 32.59 170634 5 55041 116012 32.18 171053 6 52969 117694 31.04 170663 7 51891 118576 30.44 170467 8 49076 118447 29.30 167523 9 46261 115312 28.63 161573 10 47932 117647 28.95 165579 11 47062 117820 28.54 164882 12 47764 119048 28.63 166812 13 47984 119429 28.66 167413 14 46925 117424 28.55 164349 15 46922 117973 28.46 164895 16 46281 117354 28.28 163635 17 45694 116769 28.13 162463 18 45209 116135 28.02 161344 19 45128 118448 27.59 163576 20 46149 118600 28.01 164749 21 44901 116957 27.74 161858 22 44384 118532 27.24 162916 23 45157 117489 27.76 162646 24 44777 115116 28.00 159893 25 44627 116702 27.66 161329 26 45112 115943 28.01 161055 27 44783 116184 27.82 160967 28 44170 116967 27.41 161137 29 43614 113573 27.75 157187 30 42586 113340 27.31 155926 31 43680 114474 27.62 158154 32 42917 112107 27.68 155024 33 42870 113583 27.40 156453 34 44083 115044 27.70 159127 35 43435 113835 27.62 157270 36 42376 113024 27.27 155400 37 43151 112357 27.75 155508 38 43460 112213 27.92 155673 39 42571 110387 27.83 152958 40 42569 111010 27.72 153579 41 42931 111456 27.81 154387 42 42259 111359 27.51 153618 43 42087 111267 27.44 153354 44 42732 112184 27.58 154916 45 41633 108466 27.74 150099 46 40796 108073 27.40 148869 47 40281 106738 27.40 147019 48 40092 107091 27.24 147183 49 40068 107361 27.18 147429 50 39890 106555 27.24 146445 51 40097 105648 27.51 145745 52 38794 105802 26.83 144596 53 39558 104410 27.48 143968 54 38317 103427 27.03 141744 55 38195 103318 26.99 141513 56 37600 102665 26.81 140265 57 37581 102309 26.86 139890 58 38137 101929 27.23 140066 59 37278 100563 27.04 137841 60 37254 99903 27.16 137157 61 36516 100012 26.75 136528 62 36276 99239 26.77 135515 63 35470 96771 26.82 132241 64 35375 96960 26.73 132335 65 34653 95785 26.57 130438 66 34403 95466 26.49 129869 67 33829 94907 26.28 128736 68 33912 94052 26.50 127964 69 33913 93810 26.55 127723 70 33841 92878 26.71 126719 71 33281 92247 26.51 125528 72 32612 91473 26.28 124085 73 32363 90592 26.32 122955 74 31363 89273 26.00 120636 75 32151 89274 26.48 121425 76 31283 88636 26.09 119919 77 31299 87685 26.31 118984 78 30277 85671 26.11 115948 79 29498 85645 25.62 115143 80 30067 85581 26.00 115648 81 29255 83785 25.88 113040 82 28483 83008 25.55 111491 83 27406 79104 25.73 106510 84 24929 73631 25.29 98560 85 16379 49938 24.70 66317 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 6442 257568 2.44 264010 2 6575 250767 2.55 257342 3 6742 250628 2.62 257370 4 6256 247544 2.46 253800 5 5921 243399 2.37 249320 6 5676 241357 2.30 247033 7 5542 245771 2.21 251313 8 5071 246023 2.02 251094 9 5024 242401 2.03 247425 10 4986 240551 2.03 245537 11 4851 241278 1.97 246129 12 4880 250995 1.91 255875 13 4882 252630 1.90 257512 14 4729 250508 1.85 255237 15 4773 255199 1.84 259972 16 4607 257615 1.76 262222 17 4527 252173 1.76 256700 18 4978 252749 1.93 257727 19 4570 256138 1.75 260708 20 4491 252861 1.75 257352 21 4690 257441 1.79 262131 22 4466 258086 1.70 262552 23 4462 252349 1.74 256811 24 4374 255954 1.68 260328 25 4570 255705 1.76 260275 26 4597 252501 1.79 257098 27 4762 253709 1.84 258471 28 4444 254504 1.72 258948 29 4501 247917 1.78 252418 30 4714 253155 1.83 257869 31 4272 251167 1.67 255439 32 4326 250062 1.70 254388 33 4355 249203 1.72 253558 34 4258 250473 1.67 254731 35 4346 245941 1.74 250287 36 4432 250003 1.74 254435 37 4426 248967 1.75 253393 38 4366 246161 1.74 250527 39 4468 245614 1.79 250082 40 4224 249910 1.66 254134 41 4118 243373 1.66 247491 42 4366 243344 1.76 247710 43 4205 245206 1.69 249411 44 4182 244027 1.68 248209 45 4312 241614 1.75 245926 46 4354 242913 1.76 247267 47 4187 240280 1.71 244467 48 4360 241697 1.77 246057 49 4318 239867 1.77 244185 50 4041 235401 1.69 239442 51 4314 236678 1.79 240992 52 4168 237816 1.72 241984 53 4027 233448 1.70 237475 54 4107 234316 1.72 238423 55 4030 233060 1.70 237090 56 4073 230017 1.74 234090 57 4419 230720 1.88 235139 58 3871 226671 1.68 230542 59 3897 223830 1.71 227727 60 4078 223505 1.79 227583 61 3857 223017 1.70 226874 62 3738 217828 1.69 221566 63 3778 218072 1.70 221850 64 3711 217399 1.68 221110 65 3904 214246 1.79 218150 66 3969 213152 1.83 217121 67 3771 212598 1.74 216369 68 3555 207006 1.69 210561 69 3905 206803 1.85 210708 70 3438 204862 1.65 208300 71 3393 201368 1.66 204761 72 3313 200314 1.63 203627 73 3521 197865 1.75 201386 74 3327 195386 1.67 198713 75 3471 196446 1.74 199917 76 3461 196663 1.73 200124 77 3528 191920 1.81 195448 78 3414 189722 1.77 193136 79 3488 191697 1.79 195185 80 3475 187594 1.82 191069 81 3448 185915 1.82 189363 82 3200 183119 1.72 186319 83 3117 175284 1.75 178401 84 2975 159415 1.83 162390 85 2042 105412 1.90 107454 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 23649 713522 3.21 737171 2 23348 694441 3.25 717789 3 26512 694690 3.68 721202 4 23141 694600 3.22 717741 5 24713 702558 3.40 727271 6 26602 720757 3.56 747359 7 23230 735677 3.06 758907 8 22664 743711 2.96 766375 9 25955 751890 3.34 777845 10 22886 775917 2.87 798803 11 23172 788368 2.86 811540 12 25975 814209 3.09 840184 13 22838 816877 2.72 839715 14 24128 821394 2.85 845522 15 26321 827053 3.08 853374 16 23276 829444 2.73 852720 17 24152 830335 2.83 854487 18 26615 839767 3.07 866382 19 22877 844502 2.64 867379 20 22870 848348 2.63 871218 21 26424 847930 3.02 874354 22 22784 841938 2.63 864722 23 23430 833229 2.74 856659 24 25335 833142 2.95 858477 25 22746 835869 2.65 858615 26 24689 838352 2.86 863041 27 25923 832025 3.02 857948 28 22833 840345 2.65 863178 29 22978 831397 2.69 854375 30 25935 835787 3.01 861722 31 22124 830071 2.60 852195 32 22652 823681 2.68 846333 33 25308 830050 2.96 855358 34 22585 829837 2.65 852422 35 23826 825062 2.81 848888 36 25147 828794 2.94 853941 37 22233 823545 2.63 845778 38 22535 823163 2.66 845698 39 24541 821031 2.90 845572 40 21462 822254 2.54 843716 41 21933 814212 2.62 836145 42 23904 812992 2.86 836896 43 20862 806417 2.52 827279 44 22494 802243 2.73 824737 45 23824 798843 2.90 822667 46 21367 796546 2.61 817913 47 21657 788736 2.67 810393 48 23808 788015 2.93 811823 49 20808 788995 2.57 809803 50 21269 788553 2.63 809822 51 23547 789006 2.90 812553 52 20367 782482 2.54 802849 53 21388 777837 2.68 799225 54 22964 769905 2.90 792869 55 20646 765268 2.63 785914 56 21539 759703 2.76 781242 57 22449 756242 2.88 778691 58 19876 751981 2.58 771857 59 20101 748650 2.61 768751 60 22071 744960 2.88 767031 61 19323 743303 2.53 762626 62 19928 734250 2.64 754178 63 21727 731239 2.89 752966 64 19399 729943 2.59 749342 65 20733 716828 2.81 737561 66 21378 716295 2.90 737673 67 18749 709916 2.57 728665 68 19148 707491 2.64 726639 69 21221 701251 2.94 722472 70 17901 695548 2.51 713449 71 18272 690219 2.58 708491 72 20525 685353 2.91 705878 73 18201 676941 2.62 695142 74 18932 670884 2.74 689816 75 19983 669418 2.90 689401 76 17621 659465 2.60 677086 77 18274 648455 2.74 666729 78 19254 642395 2.91 661649 79 17159 638870 2.62 656029 80 17570 631928 2.71 649498 81 18723 625418 2.91 644141 82 16438 614123 2.61 630561 83 16623 591987 2.73 608610 84 16608 543981 2.96 560589 85 9111 356870 2.49 365981 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21637 97523 18.16 119160 2 23405 89246 20.78 112651 3 20629 79348 20.63 99977 4 22819 86911 20.80 109730 5 24313 84086 22.43 108399 6 23702 79470 22.97 103172 7 24093 79092 23.35 103185 8 25541 80519 24.08 106060 9 24822 74324 25.04 99146 10 23491 70713 24.94 94204 11 27421 76234 26.45 103655 12 26836 75682 26.18 102518 13 25277 73448 25.60 98725 14 23992 70413 25.41 94405 15 24985 69038 26.57 94023 16 24547 70132 25.93 94679 17 23483 67904 25.70 91387 18 22000 64521 25.43 86521 19 24315 68234 26.27 92549 20 22473 63899 26.02 86372 21 24323 65334 27.13 89657 22 22347 62013 26.49 84360 23 22636 63943 26.14 86579 24 21851 60381 26.57 82232 25 21122 60732 25.80 81854 26 20472 56735 26.52 77207 27 23216 59541 28.05 82757 28 21680 61314 26.12 82994 29 25818 64707 28.52 90525 30 22022 57951 27.54 79973 31 22622 59393 27.58 82015 32 20249 56803 26.28 77052 33 20831 56271 27.02 77102 34 22544 56331 28.58 78875 35 20053 55963 26.38 76016 36 20262 56509 26.39 76771 37 20187 54578 27.00 74765 38 19342 53063 26.71 72405 39 23016 57326 28.65 80342 40 18577 50013 27.08 68590 41 18834 51054 26.95 69888 42 18794 51597 26.70 70391 43 18405 51377 26.37 69782 44 17534 48173 26.69 65707 45 17411 47738 26.72 65149 46 17433 48202 26.56 65635 47 17412 46940 27.06 64352 48 17580 47253 27.12 64833 49 17312 47057 26.89 64369 50 16079 45647 26.05 61726 51 17170 46017 27.17 63187 52 16847 45107 27.19 61954 53 16203 43267 27.25 59470 54 16507 44276 27.16 60783 55 15104 41651 26.61 56755 56 14795 41486 26.29 56281 57 15926 41411 27.78 57337 58 15398 40928 27.34 56326 59 14444 38511 27.28 52955 60 15331 39985 27.72 55316 61 14526 40936 26.19 55462 62 15430 41662 27.03 57092 63 13961 37754 27.00 51715 64 13313 37445 26.23 50758 65 13951 36576 27.61 50527 66 13065 35845 26.71 48910 67 13643 36738 27.08 50381 68 12297 35117 25.94 47414 69 12411 34918 26.22 47329 70 12623 34189 26.97 46812 71 12281 33921 26.58 46202 72 12246 33591 26.72 45837 73 11626 32984 26.06 44610 74 11724 32856 26.30 44580 75 11488 32481 26.13 43969 76 11733 32133 26.75 43866 77 11582 31154 27.10 42736 78 12400 33519 27.00 45919 79 11108 30749 26.54 41857 80 10878 30452 26.32 41330 81 10760 29610 26.65 40370 82 10844 29247 27.05 40091 83 11228 30305 27.03 41533 84 10798 28828 27.25 39626 85 4981 13353 27.17 18334 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3294 210291 1.54 213585 2 3233 222785 1.43 226018 3 2731 186227 1.45 188958 4 2676 177447 1.49 180123 5 3714 227958 1.60 231672 6 2927 187259 1.54 190186 7 2963 184149 1.58 187112 8 2881 179363 1.58 182244 9 2875 171423 1.65 174298 10 2588 160904 1.58 163492 11 2961 170884 1.70 173845 12 2957 152537 1.90 155494 13 2582 149257 1.70 151839 14 2431 148564 1.61 150995 15 2873 143004 1.97 145877 16 2722 154015 1.74 156737 17 2564 151935 1.66 154499 18 2283 137186 1.64 139469 19 2357 139891 1.66 142248 20 2354 146326 1.58 148680 21 2378 136745 1.71 139123 22 2188 131792 1.63 133980 23 2338 138436 1.66 140774 24 2221 135195 1.62 137416 25 2121 129128 1.62 131249 26 2228 131788 1.66 134016 27 2485 150858 1.62 153343 28 2193 128714 1.68 130907 29 2202 131646 1.65 133848 30 2209 131429 1.65 133638 31 2057 122152 1.66 124209 32 2175 126803 1.69 128978 33 1979 118721 1.64 120700 34 2040 117144 1.71 119184 35 1996 115827 1.69 117823 36 1929 110360 1.72 112289 37 1961 113075 1.70 115036 38 1891 112814 1.65 114705 39 1852 105973 1.72 107825 40 1875 107199 1.72 109074 41 1862 109130 1.68 110992 42 1782 105156 1.67 106938 43 1943 109232 1.75 111175 44 1926 105282 1.80 107208 45 1735 99454 1.71 101189 46 1679 96877 1.70 98556 47 1903 107630 1.74 109533 48 1815 99616 1.79 101431 49 1713 97316 1.73 99029 50 1669 97878 1.68 99547 51 1849 93034 1.95 94883 52 1643 91860 1.76 93503 53 1600 94724 1.66 96324 54 1715 91919 1.83 93634 55 1586 91633 1.70 93219 56 1610 92259 1.72 93869 57 1660 91787 1.78 93447 58 1461 86527 1.66 87988 59 1524 88038 1.70 89562 60 1468 83790 1.72 85258 61 1598 87874 1.79 89472 62 1408 85626 1.62 87034 63 1497 85466 1.72 86963 64 1396 85145 1.61 86541 65 1509 85748 1.73 87257 66 1321 80380 1.62 81701 67 1425 79086 1.77 80511 68 1345 80237 1.65 81582 69 1303 77822 1.65 79125 70 1286 75521 1.67 76807 71 1309 78683 1.64 79992 72 1252 73508 1.67 74760 73 1319 74033 1.75 75352 74 1222 72702 1.65 73924 75 1231 70177 1.72 71408 76 1193 69272 1.69 70465 77 1202 69924 1.69 71126 78 1182 67898 1.71 69080 79 1230 73783 1.64 75013 80 1119 67430 1.63 68549 81 1155 66601 1.70 67756 82 1054 63451 1.63 64505 83 1171 66244 1.74 67415 84 1158 63598 1.79 64756 85 555 31500 1.73 32055 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 14338 639379 2.19 653717 2 14372 633106 2.22 647478 3 14560 597013 2.38 611573 4 14461 609828 2.32 624289 5 14371 596722 2.35 611093 6 13540 558115 2.37 571655 7 13470 573261 2.30 586731 8 13583 574280 2.31 587863 9 13526 583097 2.27 596623 10 12863 557681 2.25 570544 11 13286 555741 2.33 569027 12 12800 556559 2.25 569359 13 12095 518516 2.28 530611 14 12736 542465 2.29 555201 15 12388 517360 2.34 529748 16 12474 500437 2.43 512911 17 12133 491088 2.41 503221 18 11467 474415 2.36 485882 19 11855 471841 2.45 483696 20 11720 467503 2.45 479223 21 12162 496420 2.39 508582 22 11290 474164 2.33 485454 23 11426 463445 2.41 474871 24 11307 452713 2.44 464020 25 10768 445218 2.36 455986 26 10739 431302 2.43 442041 27 10743 427817 2.45 438560 28 10871 423969 2.50 434840 29 11328 435644 2.53 446972 30 10399 428036 2.37 438435 31 10452 426957 2.39 437409 32 11053 443241 2.43 454294 33 10511 410150 2.50 420661 34 10336 428299 2.36 438635 35 10343 405306 2.49 415649 36 10323 412155 2.44 422478 37 9993 394125 2.47 404118 38 9956 391074 2.48 401030 39 9864 391306 2.46 401170 40 9527 395730 2.35 405257 41 9542 385074 2.42 394616 42 9804 377583 2.53 387387 43 9160 381849 2.34 391009 44 9287 375838 2.41 385125 45 9148 367895 2.43 377043 46 8707 353572 2.40 362279 47 8472 350519 2.36 358991 48 8305 343974 2.36 352279 49 8684 352488 2.40 361172 50 8364 342239 2.39 350603 51 8267 350236 2.31 358503 52 8143 340064 2.34 348207 53 8053 327682 2.40 335735 54 8169 337430 2.36 345599 55 8027 322347 2.43 330374 56 7800 320682 2.37 328482 57 7831 321222 2.38 329053 58 7725 311878 2.42 319603 59 7452 314883 2.31 322335 60 7543 302546 2.43 310089 61 7299 303379 2.35 310678 62 7447 311339 2.34 318786 63 7519 302738 2.42 310257 64 7148 292094 2.39 299242 65 7197 289189 2.43 296386 66 6960 286090 2.38 293050 67 7133 284560 2.45 291693 68 6822 284645 2.34 291467 69 6771 282594 2.34 289365 70 6527 271597 2.35 278124 71 6641 270019 2.40 276660 72 6673 270634 2.41 277307 73 6507 273907 2.32 280414 74 6549 263809 2.42 270358 75 6493 264995 2.39 271488 76 6346 259852 2.38 266198 77 6304 257184 2.39 263488 78 6215 253938 2.39 260153 79 5949 249379 2.33 255328 80 6038 248443 2.37 254481 81 5886 245337 2.34 251223 82 5720 238784 2.34 244504 83 5535 235504 2.30 241039 84 5087 227709 2.19 232796 85 2763 111942 2.41 114705