/gscratch/scrubbed/strigg/analyses/20200319/EPI-167_S10_L002_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/analyses/20200319/EPI-167_S10_L002_R2_001_val_2.fq.gz
Data processed at 18:35 on 2020-03-19
Alignment Stats
Sequence pairs analysed in total
24337012
Paired-end alignments with a unique best hit
10281806
Pairs without alignments under any condition
11544916
Pairs that did not map uniquely
2510290
Genomic sequence context not extractable (edges of chromosomes)
7
Cytosine Methylation
Total C's analysed
276946851
Methylated C's in CpG context
8921824
Methylated C's in CHG context
999580
Methylated C's in CHH context
4717727
Methylated C's in Unknown context
30868
Unmethylated C's in CpG context
25953298
Unmethylated C's in CHG context
56361217
Unmethylated C's in CHH context
179993205
Unmethylated C's in Unknown context
574493
Percentage methylation (CpG context)
25.6%
Percentage methylation (CHG context)
1.7%
Percentage methylation (CHH context)
2.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5108752
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5173047
original bottom strand
Deduplication
Alignments analysed
10281799
Unique alignments
7524026
Duplicates removed
2757773
Duplicated alignments were found at 1803076 different positions
