EPI-167_S10_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7524620 lines in total Total number of methylation call strings processed: 15049240 Final Cytosine Methylation Report ================================= Total number of C's analysed: 148220937 Total methylated C's in CpG context: 4998440 Total methylated C's in CHG context: 528551 Total methylated C's in CHH context: 2663304 Total C to T conversions in CpG context: 13391850 Total C to T conversions in CHG context: 29300633 Total C to T conversions in CHH context: 97338159 C methylated in CpG context: 27.2% C methylated in CHG context: 1.8% C methylated in CHH context: 2.7%