CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 53899 116039 31.72 169938 2 54836 112714 32.73 167550 3 57740 116567 33.13 174307 4 55610 115024 32.59 170634 5 55056 116019 32.18 171075 6 52980 117710 31.04 170690 7 51900 118568 30.45 170468 8 49082 118437 29.30 167519 9 46271 115338 28.63 161609 10 47932 117646 28.95 165578 11 47076 117813 28.55 164889 12 47762 119036 28.63 166798 13 47987 119433 28.66 167420 14 46938 117419 28.56 164357 15 46911 117977 28.45 164888 16 46279 117367 28.28 163646 17 45697 116763 28.13 162460 18 45204 116147 28.02 161351 19 45131 118465 27.59 163596 20 46153 118614 28.01 164767 21 44901 116976 27.74 161877 22 44378 118550 27.24 162928 23 45152 117517 27.76 162669 24 44785 115124 28.01 159909 25 44635 116724 27.66 161359 26 45112 115942 28.01 161054 27 44788 116209 27.82 160997 28 44175 116972 27.41 161147 29 43619 113584 27.75 157203 30 42605 113340 27.32 155945 31 43675 114500 27.61 158175 32 42918 112119 27.68 155037 33 42879 113590 27.40 156469 34 44081 115053 27.70 159134 35 43443 113857 27.62 157300 36 42381 113035 27.27 155416 37 43140 112354 27.74 155494 38 43467 112241 27.92 155708 39 42567 110385 27.83 152952 40 42573 111024 27.72 153597 41 42935 111469 27.81 154404 42 42259 111356 27.51 153615 43 42095 111263 27.45 153358 44 42735 112206 27.58 154941 45 41639 108474 27.74 150113 46 40799 108073 27.41 148872 47 40275 106756 27.39 147031 48 40099 107090 27.24 147189 49 40070 107377 27.18 147447 50 39893 106553 27.24 146446 51 40100 105648 27.51 145748 52 38804 105815 26.83 144619 53 39564 104409 27.48 143973 54 38322 103418 27.04 141740 55 38192 103320 26.99 141512 56 37599 102664 26.81 140263 57 37582 102315 26.86 139897 58 38143 101928 27.23 140071 59 37281 100564 27.05 137845 60 37253 99911 27.16 137164 61 36519 100011 26.75 136530 62 36275 99227 26.77 135502 63 35468 96764 26.82 132232 64 35373 96945 26.73 132318 65 34648 95777 26.57 130425 66 34400 95455 26.49 129855 67 33821 94893 26.28 128714 68 33903 94047 26.50 127950 69 33894 93807 26.54 127701 70 33832 92879 26.70 126711 71 33285 92251 26.51 125536 72 32609 91479 26.28 124088 73 32356 90591 26.32 122947 74 31356 89262 26.00 120618 75 32151 89275 26.48 121426 76 31274 88631 26.08 119905 77 31287 87676 26.30 118963 78 30278 85672 26.11 115950 79 29510 85648 25.63 115158 80 30067 85579 26.00 115646 81 29262 83785 25.88 113047 82 28477 83011 25.54 111488 83 27395 79106 25.72 106501 84 24916 73632 25.28 98548 85 16372 49940 24.69 66312 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 6443 257581 2.44 264024 2 6572 250773 2.55 257345 3 6737 250616 2.62 257353 4 6254 247565 2.46 253819 5 5920 243433 2.37 249353 6 5677 241354 2.30 247031 7 5539 245783 2.20 251322 8 5072 246052 2.02 251124 9 5026 242413 2.03 247439 10 4990 240583 2.03 245573 11 4852 241276 1.97 246128 12 4879 251005 1.91 255884 13 4883 252643 1.90 257526 14 4733 250547 1.85 255280 15 4777 255206 1.84 259983 16 4608 257626 1.76 262234 17 4525 252187 1.76 256712 18 4987 252757 1.93 257744 19 4569 256176 1.75 260745 20 4490 252848 1.74 257338 21 4691 257440 1.79 262131 22 4471 258077 1.70 262548 23 4463 252347 1.74 256810 24 4375 255980 1.68 260355 25 4572 255735 1.76 260307 26 4598 252516 1.79 257114 27 4764 253718 1.84 258482 28 4442 254528 1.72 258970 29 4497 247943 1.78 252440 30 4715 253169 1.83 257884 31 4271 251188 1.67 255459 32 4324 250077 1.70 254401 33 4354 249231 1.72 253585 34 4259 250517 1.67 254776 35 4346 245959 1.74 250305 36 4434 249992 1.74 254426 37 4428 249018 1.75 253446 38 4368 246175 1.74 250543 39 4469 245627 1.79 250096 40 4222 249926 1.66 254148 41 4118 243395 1.66 247513 42 4365 243377 1.76 247742 43 4206 245245 1.69 249451 44 4183 244053 1.69 248236 45 4312 241629 1.75 245941 46 4351 242936 1.76 247287 47 4183 240299 1.71 244482 48 4358 241701 1.77 246059 49 4317 239887 1.77 244204 50 4042 235415 1.69 239457 51 4314 236689 1.79 241003 52 4168 237841 1.72 242009 53 4024 233474 1.69 237498 54 4103 234333 1.72 238436 55 4027 233079 1.70 237106 56 4073 230015 1.74 234088 57 4414 230726 1.88 235140 58 3866 226674 1.68 230540 59 3895 223846 1.71 227741 60 4075 223502 1.79 227577 61 3853 223015 1.70 226868 62 3738 217810 1.69 221548 63 3771 218060 1.70 221831 64 3708 217376 1.68 221084 65 3904 214226 1.79 218130 66 3973 213132 1.83 217105 67 3770 212590 1.74 216360 68 3552 206993 1.69 210545 69 3900 206791 1.85 210691 70 3437 204856 1.65 208293 71 3390 201363 1.66 204753 72 3314 200301 1.63 203615 73 3518 197867 1.75 201385 74 3330 195385 1.68 198715 75 3469 196436 1.74 199905 76 3453 196650 1.73 200103 77 3520 191917 1.80 195437 78 3411 189728 1.77 193139 79 3491 191706 1.79 195197 80 3478 187599 1.82 191077 81 3442 185918 1.82 189360 82 3194 183121 1.71 186315 83 3112 175281 1.74 178393 84 2954 159415 1.82 162369 85 2034 105413 1.89 107447 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 23647 713563 3.21 737210 2 23353 694586 3.25 717939 3 26517 694758 3.68 721275 4 23144 694760 3.22 717904 5 24716 702683 3.40 727399 6 26606 720862 3.56 747468 7 23237 735743 3.06 758980 8 22664 743762 2.96 766426 9 25947 751935 3.34 777882 10 22887 775986 2.86 798873 11 23180 788506 2.86 811686 12 25972 814329 3.09 840301 13 22845 816987 2.72 839832 14 24140 821494 2.85 845634 15 26330 827110 3.09 853440 16 23280 829500 2.73 852780 17 24161 830410 2.83 854571 18 26626 839859 3.07 866485 19 22890 844580 2.64 867470 20 22876 848382 2.63 871258 21 26427 847977 3.02 874404 22 22797 842056 2.64 864853 23 23427 833256 2.73 856683 24 25350 833180 2.95 858530 25 22746 835959 2.65 858705 26 24688 838425 2.86 863113 27 25920 832110 3.02 858030 28 22838 840435 2.65 863273 29 22974 831447 2.69 854421 30 25936 835819 3.01 861755 31 22117 830132 2.60 852249 32 22661 823764 2.68 846425 33 25308 830146 2.96 855454 34 22587 829925 2.65 852512 35 23828 825165 2.81 848993 36 25145 828835 2.94 853980 37 22230 823587 2.63 845817 38 22528 823201 2.66 845729 39 24533 821052 2.90 845585 40 21462 822297 2.54 843759 41 21926 814257 2.62 836183 42 23900 813012 2.86 836912 43 20867 806438 2.52 827305 44 22489 802291 2.73 824780 45 23819 798904 2.90 822723 46 21368 796588 2.61 817956 47 21657 788769 2.67 810426 48 23801 788038 2.93 811839 49 20804 788985 2.57 809789 50 21277 788592 2.63 809869 51 23547 789000 2.90 812547 52 20369 782492 2.54 802861 53 21383 777887 2.68 799270 54 22960 769928 2.90 792888 55 20649 765306 2.63 785955 56 21549 759705 2.76 781254 57 22453 756265 2.88 778718 58 19875 751971 2.57 771846 59 20103 748639 2.62 768742 60 22070 744964 2.88 767034 61 19324 743290 2.53 762614 62 19925 734277 2.64 754202 63 21728 731226 2.89 752954 64 19395 729941 2.59 749336 65 20730 716796 2.81 737526 66 21378 716265 2.90 737643 67 18748 709894 2.57 728642 68 19147 707481 2.64 726628 69 21224 701246 2.94 722470 70 17905 695545 2.51 713450 71 18263 690226 2.58 708489 72 20527 685364 2.91 705891 73 18207 676953 2.62 695160 74 18936 670896 2.75 689832 75 19981 669420 2.90 689401 76 17617 659460 2.60 677077 77 18263 648466 2.74 666729 78 19237 642392 2.91 661629 79 17148 638869 2.61 656017 80 17551 631928 2.70 649479 81 18690 625416 2.90 644106 82 16404 614120 2.60 630524 83 16598 591993 2.73 608591 84 16577 543984 2.96 560561 85 9075 356863 2.48 365938 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21629 97523 18.15 119152 2 23405 89244 20.78 112649 3 20625 79348 20.63 99973 4 22819 86912 20.80 109731 5 24313 84089 22.43 108402 6 23700 79475 22.97 103175 7 24094 79093 23.35 103187 8 25541 80518 24.08 106059 9 24823 74327 25.04 99150 10 23489 70715 24.93 94204 11 27403 76233 26.44 103636 12 26837 75684 26.18 102521 13 25277 73444 25.60 98721 14 23993 70410 25.42 94403 15 24984 69038 26.57 94022 16 24547 70131 25.93 94678 17 23482 67903 25.70 91385 18 21997 64519 25.43 86516 19 24312 68232 26.27 92544 20 22470 63899 26.02 86369 21 24320 65331 27.13 89651 22 22346 62008 26.49 84354 23 22638 63939 26.15 86577 24 21854 60381 26.58 82235 25 21124 60731 25.81 81855 26 20473 56735 26.52 77208 27 23217 59543 28.05 82760 28 21681 61317 26.12 82998 29 25819 64706 28.52 90525 30 22022 57951 27.54 79973 31 22622 59396 27.58 82018 32 20249 56802 26.28 77051 33 20835 56272 27.02 77107 34 22545 56334 28.58 78879 35 20053 55962 26.38 76015 36 20263 56508 26.39 76771 37 20189 54578 27.00 74767 38 19343 53065 26.71 72408 39 23017 57325 28.65 80342 40 18577 50016 27.08 68593 41 18835 51055 26.95 69890 42 18795 51597 26.70 70392 43 18406 51377 26.38 69783 44 17532 48174 26.68 65706 45 17412 47738 26.73 65150 46 17432 48201 26.56 65633 47 17412 46943 27.06 64355 48 17580 47251 27.12 64831 49 17312 47057 26.89 64369 50 16080 45647 26.05 61727 51 17170 46018 27.17 63188 52 16848 45109 27.19 61957 53 16203 43269 27.24 59472 54 16507 44274 27.16 60781 55 15104 41654 26.61 56758 56 14795 41487 26.29 56282 57 15926 41411 27.78 57337 58 15398 40928 27.34 56326 59 14444 38513 27.27 52957 60 15331 39985 27.72 55316 61 14528 40938 26.19 55466 62 15430 41663 27.03 57093 63 13960 37755 26.99 51715 64 13313 37446 26.23 50759 65 13951 36578 27.61 50529 66 13066 35844 26.71 48910 67 13643 36739 27.08 50382 68 12298 35120 25.94 47418 69 12411 34918 26.22 47329 70 12623 34188 26.97 46811 71 12282 33923 26.58 46205 72 12246 33592 26.72 45838 73 11626 32986 26.06 44612 74 11725 32858 26.30 44583 75 11488 32480 26.13 43968 76 11733 32133 26.75 43866 77 11582 31156 27.10 42738 78 12400 33519 27.00 45919 79 11108 30750 26.54 41858 80 10878 30451 26.32 41329 81 10760 29610 26.65 40370 82 10845 29247 27.05 40092 83 11230 30305 27.04 41535 84 10798 28828 27.25 39626 85 4982 13354 27.17 18336 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3284 210290 1.54 213574 2 3233 222777 1.43 226010 3 2726 186225 1.44 188951 4 2675 177443 1.49 180118 5 3715 227962 1.60 231677 6 2927 187259 1.54 190186 7 2963 184142 1.58 187105 8 2881 179361 1.58 182242 9 2875 171420 1.65 174295 10 2588 160907 1.58 163495 11 2957 170888 1.70 173845 12 2956 152506 1.90 155462 13 2581 149256 1.70 151837 14 2430 148566 1.61 150996 15 2873 143002 1.97 145875 16 2721 153986 1.74 156707 17 2564 151937 1.66 154501 18 2283 137193 1.64 139476 19 2357 139886 1.66 142243 20 2352 146321 1.58 148673 21 2378 136738 1.71 139116 22 2187 131783 1.63 133970 23 2338 138421 1.66 140759 24 2221 135199 1.62 137420 25 2121 129131 1.62 131252 26 2228 131787 1.66 134015 27 2486 150856 1.62 153342 28 2193 128715 1.68 130908 29 2202 131651 1.65 133853 30 2210 131433 1.65 133643 31 2057 122153 1.66 124210 32 2175 126806 1.69 128981 33 1977 118721 1.64 120698 34 2040 117144 1.71 119184 35 1996 115826 1.69 117822 36 1929 110358 1.72 112287 37 1959 113078 1.70 115037 38 1891 112815 1.65 114706 39 1852 105975 1.72 107827 40 1875 107197 1.72 109072 41 1862 109129 1.68 110991 42 1782 105155 1.67 106937 43 1943 109230 1.75 111173 44 1927 105282 1.80 107209 45 1735 99458 1.71 101193 46 1679 96877 1.70 98556 47 1903 107632 1.74 109535 48 1814 99616 1.79 101430 49 1714 97316 1.73 99030 50 1669 97881 1.68 99550 51 1848 93034 1.95 94882 52 1643 91860 1.76 93503 53 1600 94723 1.66 96323 54 1715 91919 1.83 93634 55 1586 91636 1.70 93222 56 1611 92260 1.72 93871 57 1660 91786 1.78 93446 58 1461 86527 1.66 87988 59 1524 88040 1.70 89564 60 1468 83791 1.72 85259 61 1598 87875 1.79 89473 62 1408 85626 1.62 87034 63 1497 85467 1.72 86964 64 1396 85142 1.61 86538 65 1509 85750 1.73 87259 66 1321 80382 1.62 81703 67 1425 79085 1.77 80510 68 1345 80239 1.65 81584 69 1304 77822 1.65 79126 70 1286 75519 1.67 76805 71 1309 78686 1.64 79995 72 1252 73507 1.67 74759 73 1320 74031 1.75 75351 74 1223 72703 1.65 73926 75 1231 70179 1.72 71410 76 1193 69271 1.69 70464 77 1202 69925 1.69 71127 78 1182 67898 1.71 69080 79 1230 73782 1.64 75012 80 1119 67431 1.63 68550 81 1156 66600 1.71 67756 82 1054 63453 1.63 64507 83 1172 66242 1.74 67414 84 1158 63600 1.79 64758 85 555 31500 1.73 32055 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 14294 639380 2.19 653674 2 14365 633105 2.22 647470 3 14517 597021 2.37 611538 4 14457 609820 2.32 624277 5 14370 596720 2.35 611090 6 13536 558114 2.37 571650 7 13469 573270 2.30 586739 8 13579 574283 2.31 587862 9 13527 583099 2.27 596626 10 12859 557674 2.25 570533 11 13289 555738 2.34 569027 12 12794 556553 2.25 569347 13 12096 518514 2.28 530610 14 12735 542461 2.29 555196 15 12390 517358 2.34 529748 16 12472 500428 2.43 512900 17 12127 491084 2.41 503211 18 11461 474418 2.36 485879 19 11851 471840 2.45 483691 20 11711 467507 2.44 479218 21 12161 496419 2.39 508580 22 11281 474158 2.32 485439 23 11425 463435 2.41 474860 24 11306 452715 2.44 464021 25 10763 445225 2.36 455988 26 10742 431299 2.43 442041 27 10743 427818 2.45 438561 28 10865 423966 2.50 434831 29 11327 435642 2.53 446969 30 10397 428039 2.37 438436 31 10456 426952 2.39 437408 32 11049 443245 2.43 454294 33 10514 410153 2.50 420667 34 10331 428312 2.36 438643 35 10347 405314 2.49 415661 36 10325 412160 2.44 422485 37 9993 394124 2.47 404117 38 9959 391078 2.48 401037 39 9867 391302 2.46 401169 40 9527 395733 2.35 405260 41 9544 385073 2.42 394617 42 9803 377580 2.53 387383 43 9156 381852 2.34 391008 44 9288 375836 2.41 385124 45 9150 367904 2.43 377054 46 8703 353580 2.40 362283 47 8475 350520 2.36 358995 48 8312 343979 2.36 352291 49 8683 352487 2.40 361170 50 8362 342241 2.39 350603 51 8269 350240 2.31 358509 52 8142 340064 2.34 348206 53 8056 327683 2.40 335739 54 8167 337429 2.36 345596 55 8027 322347 2.43 330374 56 7802 320681 2.38 328483 57 7832 321224 2.38 329056 58 7724 311879 2.42 319603 59 7452 314885 2.31 322337 60 7543 302548 2.43 310091 61 7299 303381 2.35 310680 62 7445 311337 2.34 318782 63 7525 302743 2.43 310268 64 7147 292100 2.39 299247 65 7198 289194 2.43 296392 66 6962 286095 2.38 293057 67 7134 284567 2.45 291701 68 6824 284649 2.34 291473 69 6774 282596 2.34 289370 70 6529 271603 2.35 278132 71 6642 270023 2.40 276665 72 6675 270643 2.41 277318 73 6508 273908 2.32 280416 74 6551 263810 2.42 270361 75 6496 264997 2.39 271493 76 6349 259857 2.38 266206 77 6307 257181 2.39 263488 78 6218 253941 2.39 260159 79 5949 249387 2.33 255336 80 6041 248447 2.37 254488 81 5886 245340 2.34 251226 82 5722 238785 2.34 244507 83 5538 235505 2.30 241043 84 5088 227712 2.19 232800 85 2766 111945 2.41 114711