/gscratch/scrubbed/strigg/analyses/20200319/specify_a/EPI-167_S10_L002_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/analyses/20200319/specify_a/EPI-167_S10_L002_R2_001_val_2.fq.gz
Data processed at 17:13 on 2020-03-19
Alignment Stats
Sequence pairs analysed in total
24340737
Paired-end alignments with a unique best hit
10282831
Pairs without alignments under any condition
11547203
Pairs that did not map uniquely
2510703
Genomic sequence context not extractable (edges of chromosomes)
7
Cytosine Methylation
Total C's analysed
276968626
Methylated C's in CpG context
8922644
Methylated C's in CHG context
999800
Methylated C's in CHH context
4718477
Methylated C's in Unknown context
31009
Unmethylated C's in CpG context
25955060
Unmethylated C's in CHG context
56364634
Unmethylated C's in CHH context
180008011
Unmethylated C's in Unknown context
574541
Percentage methylation (CpG context)
25.6%
Percentage methylation (CHG context)
1.7%
Percentage methylation (CHH context)
2.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5109279
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5173545
original bottom strand
Deduplication
Alignments analysed
10282824
Unique alignments
7524620
Duplicates removed
2758204
Duplicated alignments were found at 1803375 different positions
