CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 72312 170941 29.73 243253 2 72851 160160 31.27 233011 3 76488 167557 31.34 244045 4 74233 162945 31.30 237178 5 72963 162553 30.98 235516 6 70125 169528 29.26 239653 7 68789 171934 28.58 240723 8 64715 172991 27.22 237706 9 61671 168806 26.76 230477 10 64312 176261 26.73 240573 11 62077 173414 26.36 235491 12 63051 172981 26.71 236032 13 63216 171929 26.88 235145 14 61640 169161 26.71 230801 15 61582 171733 26.39 233315 16 60868 168935 26.49 229803 17 60128 167502 26.41 227630 18 59647 167209 26.29 226856 19 59261 168972 25.97 228233 20 60818 173189 25.99 234007 21 59595 171265 25.81 230860 22 58489 171822 25.40 230311 23 59692 169495 26.05 229187 24 59192 164747 26.43 223939 25 58957 167424 26.04 226381 26 59927 168449 26.24 228376 27 59502 172362 25.66 231864 28 58455 172932 25.26 231387 29 57560 165953 25.75 223513 30 56826 166893 25.40 223719 31 57709 171551 25.17 229260 32 56838 163837 25.76 220675 33 56471 161995 25.85 218466 34 58436 167687 25.84 226123 35 57288 166168 25.64 223456 36 56056 163309 25.55 219365 37 57225 163532 25.92 220757 38 57913 169839 25.43 227752 39 56380 161738 25.85 218118 40 56965 164300 25.75 221265 41 57264 160790 26.26 218054 42 56128 164068 25.49 220196 43 55968 165411 25.28 221379 44 56857 160617 26.14 217474 45 55442 152595 26.65 208037 46 54185 151891 26.29 206076 47 53914 159477 25.27 213391 48 53376 154686 25.65 208062 49 53260 158900 25.10 212160 50 53195 160727 24.87 213922 51 53680 155856 25.62 209536 52 51956 153222 25.32 205178 53 52632 148611 26.15 201243 54 51328 149302 25.58 200630 55 51033 146593 25.82 197626 56 50056 147550 25.33 197606 57 50110 148731 25.20 198841 58 51345 147524 25.82 198869 59 49926 145218 25.58 195144 60 49797 144536 25.62 194333 61 48524 144638 25.12 193162 62 48431 141000 25.57 189431 63 47708 136556 25.89 184264 64 47610 137276 25.75 184886 65 46660 136364 25.49 183024 66 46339 136111 25.40 182450 67 45559 138262 24.78 183821 68 45363 137725 24.78 183088 69 45665 134470 25.35 180135 70 45521 133123 25.48 178644 71 44751 133246 25.14 177997 72 44071 133260 24.85 177331 73 44140 134530 24.70 178670 74 42550 130769 24.55 173319 75 43544 129060 25.23 172604 76 42341 127301 24.96 169642 77 42454 126595 25.11 169049 78 41398 123777 25.06 165175 79 40355 126105 24.24 166460 80 41049 129018 24.14 170067 81 39584 121753 24.53 161337 82 38329 121756 23.94 160085 83 36878 113590 24.51 150468 84 33720 107334 23.91 141054 85 21918 73113 23.06 95031 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 9153 368175 2.43 377328 2 9401 356064 2.57 365465 3 9469 355555 2.59 365024 4 8884 351679 2.46 360563 5 8248 346243 2.33 354491 6 7829 340279 2.25 348108 7 7597 342037 2.17 349634 8 6850 341734 1.97 348584 9 6852 337484 1.99 344336 10 6776 334329 1.99 341105 11 6783 339702 1.96 346485 12 6769 354056 1.88 360825 13 6734 357248 1.85 363982 14 6624 361293 1.80 367917 15 6560 358017 1.80 364577 16 6259 361647 1.70 367906 17 6162 351146 1.72 357308 18 6700 352889 1.86 359589 19 6232 358300 1.71 364532 20 6126 355411 1.69 361537 21 6297 361560 1.71 367857 22 6194 361265 1.69 367459 23 6209 366551 1.67 372760 24 6160 367241 1.65 373401 25 6265 361188 1.70 367453 26 6376 355892 1.76 362268 27 6391 352548 1.78 358939 28 6154 359293 1.68 365447 29 6140 346844 1.74 352984 30 6420 353416 1.78 359836 31 5866 352383 1.64 358249 32 5892 351965 1.65 357857 33 6201 359407 1.70 365608 34 5861 354182 1.63 360043 35 5962 345163 1.70 351125 36 6073 354947 1.68 361020 37 6132 349604 1.72 355736 38 6056 346518 1.72 352574 39 6097 344222 1.74 350319 40 5906 352943 1.65 358849 41 5761 346299 1.64 352060 42 6043 344995 1.72 351038 43 6070 358194 1.67 364264 44 6015 353220 1.67 359235 45 6090 343573 1.74 349663 46 6230 352100 1.74 358330 47 5971 346721 1.69 352692 48 6087 344895 1.73 350982 49 6075 343423 1.74 349498 50 5737 340088 1.66 345825 51 6056 340765 1.75 346821 52 5885 344203 1.68 350088 53 5643 335557 1.65 341200 54 5704 335818 1.67 341522 55 5705 339959 1.65 345664 56 5719 332016 1.69 337735 57 6339 335357 1.86 341696 58 5548 325023 1.68 330571 59 5506 319941 1.69 325447 60 5741 321813 1.75 327554 61 5383 316460 1.67 321843 62 5327 311381 1.68 316708 63 5345 311850 1.69 317195 64 5274 310629 1.67 315903 65 5448 309299 1.73 314747 66 5704 310966 1.80 316670 67 5471 311510 1.73 316981 68 4978 296025 1.65 301003 69 5370 293204 1.80 298574 70 4931 299729 1.62 304660 71 4672 287756 1.60 292428 72 4608 286118 1.58 290726 73 5035 284923 1.74 289958 74 4606 281770 1.61 286376 75 5050 288985 1.72 294035 76 4951 285701 1.70 290652 77 5062 283927 1.75 288989 78 4923 275859 1.75 280782 79 4921 278553 1.74 283474 80 4837 266569 1.78 271406 81 4770 264541 1.77 269311 82 4459 263891 1.66 268350 83 4417 250134 1.74 254551 84 4113 226844 1.78 230957 85 2831 150961 1.84 153792 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 30946 993792 3.02 1024738 2 30469 968959 3.05 999428 3 33778 970938 3.36 1004716 4 29978 960529 3.03 990507 5 31679 967640 3.17 999319 6 33471 987180 3.28 1020651 7 29778 1012976 2.86 1042754 8 28938 1016781 2.77 1045719 9 32768 1043206 3.05 1075974 10 29390 1073625 2.66 1103015 11 29518 1083522 2.65 1113040 12 32494 1114927 2.83 1147421 13 29302 1120251 2.55 1149553 14 30507 1121266 2.65 1151773 15 32871 1129667 2.83 1162538 16 29855 1138327 2.56 1168182 17 30829 1138295 2.64 1169124 18 33537 1162845 2.80 1196382 19 29361 1169869 2.45 1199230 20 29263 1180947 2.42 1210210 21 33308 1177352 2.75 1210660 22 29097 1158495 2.45 1187592 23 29782 1144915 2.54 1174697 24 31640 1139349 2.70 1170989 25 29172 1147732 2.48 1176904 26 31337 1144898 2.66 1176235 27 32751 1146494 2.78 1179245 28 29519 1167626 2.47 1197145 29 29493 1159391 2.48 1188884 30 32961 1167865 2.74 1200826 31 28456 1156069 2.40 1184525 32 28985 1144436 2.47 1173421 33 31845 1146086 2.70 1177931 34 29061 1140950 2.48 1170011 35 30835 1146564 2.62 1177399 36 32621 1158127 2.74 1190748 37 28978 1147145 2.46 1176123 38 29328 1144113 2.50 1173441 39 31465 1153132 2.66 1184597 40 28060 1146459 2.39 1174519 41 28601 1130962 2.47 1159563 42 30691 1130583 2.64 1161274 43 26877 1114528 2.35 1141405 44 28761 1109558 2.53 1138319 45 30089 1104772 2.65 1134861 46 27460 1102457 2.43 1129917 47 27663 1095717 2.46 1123380 48 30158 1090432 2.69 1120590 49 26961 1101602 2.39 1128563 50 27552 1103601 2.44 1131153 51 30073 1106096 2.65 1136169 52 26415 1093261 2.36 1119676 53 27640 1087706 2.48 1115346 54 28986 1068262 2.64 1097248 55 26686 1062158 2.45 1088844 56 27442 1058763 2.53 1086205 57 28309 1048486 2.63 1076795 58 25442 1035285 2.40 1060727 59 25655 1035944 2.42 1061599 60 27995 1034696 2.63 1062691 61 25213 1046166 2.35 1071379 62 25792 1028138 2.45 1053930 63 27892 1037441 2.62 1065333 64 25404 1031309 2.40 1056713 65 26818 1007131 2.59 1033949 66 27319 997327 2.67 1024646 67 24219 986825 2.40 1011044 68 24635 980493 2.45 1005128 69 26796 973596 2.68 1000392 70 23202 969399 2.34 992601 71 23464 962859 2.38 986323 72 26293 961284 2.66 987577 73 23514 943059 2.43 966573 74 24308 938640 2.52 962948 75 25304 933695 2.64 958999 76 22618 919398 2.40 942016 77 23535 907077 2.53 930612 78 24405 896501 2.65 920906 79 22170 886777 2.44 908947 80 22409 874838 2.50 897247 81 23649 867534 2.65 891183 82 21197 852052 2.43 873249 83 21214 821047 2.52 842261 84 21011 754166 2.71 775177 85 11854 494827 2.34 506681 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 28755 138053 17.24 166808 2 31175 123953 20.10 155128 3 27538 115053 19.31 142591 4 30629 120916 20.21 151545 5 32643 122118 21.09 154761 6 31708 124257 20.33 155965 7 32193 108564 22.87 140757 8 34094 115680 22.76 149774 9 33228 101624 24.64 134852 10 31496 96558 24.60 128054 11 36614 104263 25.99 140877 12 35537 104057 25.46 139594 13 33710 101041 25.02 134751 14 32172 109667 22.68 141839 15 33397 92541 26.52 125938 16 32650 95955 25.39 128605 17 31282 91270 25.53 122552 18 29560 89405 24.85 118965 19 33991 99415 25.48 133406 20 30258 87850 25.62 118108 21 34886 94620 26.94 129506 22 30037 83545 26.45 113582 23 30250 86706 25.86 116956 24 29064 82176 26.13 111240 25 27889 82071 25.36 109960 26 27132 78758 25.62 105890 27 30965 86672 26.32 117637 28 28796 86616 24.95 115412 29 34142 87291 28.12 121433 30 29368 81883 26.40 111251 31 29874 79446 27.33 109320 32 26815 80095 25.08 106910 33 27350 75969 26.47 103319 34 29811 76122 28.14 105933 35 26460 81997 24.40 108457 36 26807 86717 23.61 113524 37 26604 76253 25.87 102857 38 25468 74902 25.37 100370 39 30259 83321 26.64 113580 40 24309 67128 26.59 91437 41 24580 70282 25.91 94862 42 24800 72847 25.40 97647 43 24245 76201 24.14 100446 44 23263 68027 25.48 91290 45 22688 66627 25.40 89315 46 22856 72258 24.03 95114 47 22815 68565 24.97 91380 48 23146 66234 25.90 89380 49 24749 66215 27.21 90964 50 21416 66249 24.43 87665 51 24375 63049 27.88 87424 52 22162 61868 26.37 84030 53 21097 61085 25.67 82182 54 21449 60894 26.05 82343 55 19530 57649 25.30 77179 56 19006 54746 25.77 73752 57 20544 55722 26.94 76266 58 19879 54720 26.65 74599 59 18638 51463 26.59 70101 60 19893 57654 25.65 77547 61 18761 57122 24.72 75883 62 20026 65687 23.36 85713 63 18589 51361 26.57 69950 64 17135 48624 26.06 65759 65 17964 47904 27.27 65868 66 16782 46292 26.61 63074 67 17566 48049 26.77 65615 68 15832 47767 24.89 63599 69 15910 52044 23.41 67954 70 16136 44548 26.59 60684 71 15659 44101 26.20 59760 72 15644 47064 24.95 62708 73 14887 42670 25.86 57557 74 14986 42334 26.14 57320 75 14670 42500 25.66 57170 76 15003 41326 26.63 56329 77 14792 39730 27.13 54522 78 15685 43528 26.49 59213 79 14243 40585 25.98 54828 80 13896 39636 25.96 53532 81 13658 37828 26.53 51486 82 13647 37223 26.83 50870 83 14099 38842 26.63 52941 84 13750 39246 25.95 52996 85 6289 17057 26.94 23346 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4434 295656 1.48 300090 2 4448 316821 1.38 321269 3 3782 268155 1.39 271937 4 3765 260639 1.42 264404 5 5067 318059 1.57 323126 6 4086 265342 1.52 269428 7 4216 267405 1.55 271621 8 3892 250172 1.53 254064 9 3928 241097 1.60 245025 10 3659 225945 1.59 229604 11 4215 242859 1.71 247074 12 3909 206405 1.86 210314 13 3425 202514 1.66 205939 14 3233 201517 1.58 204750 15 3850 201858 1.87 205708 16 3755 221747 1.67 225502 17 3501 209002 1.65 212503 18 3137 188193 1.64 191330 19 3214 190571 1.66 193785 20 3400 208150 1.61 211550 21 3237 187553 1.70 190790 22 2992 186337 1.58 189329 23 3187 197433 1.59 200620 24 2971 183455 1.59 186426 25 2865 177407 1.59 180272 26 3025 180847 1.65 183872 27 3406 212015 1.58 215421 28 3041 180097 1.66 183138 29 3003 183024 1.61 186027 30 3069 187532 1.61 190601 31 2970 182022 1.61 184992 32 3050 178531 1.68 181581 33 3010 183389 1.61 186399 34 2880 164501 1.72 167381 35 2679 155262 1.70 157941 36 2505 146803 1.68 149308 37 2647 155614 1.67 158261 38 2534 155928 1.60 158462 39 2405 143407 1.65 145812 40 2425 141796 1.68 144221 41 2426 144697 1.65 147123 42 2337 140578 1.64 142915 43 2514 147242 1.68 149756 44 2566 143287 1.76 145853 45 2263 134978 1.65 137241 46 2240 131187 1.68 133427 47 2446 142315 1.69 144761 48 2414 133674 1.77 136088 49 2288 130509 1.72 132797 50 2248 130639 1.69 132887 51 2488 126191 1.93 128679 52 2334 129584 1.77 131918 53 2062 126664 1.60 128726 54 2309 130383 1.74 132692 55 2077 122736 1.66 124813 56 2133 125942 1.67 128075 57 2467 131132 1.85 133599 58 1881 113545 1.63 115426 59 1969 114652 1.69 116621 60 1975 111867 1.73 113842 61 2076 117695 1.73 119771 62 1916 117221 1.61 119137 63 1938 113068 1.69 115006 64 1823 111584 1.61 113407 65 1981 113944 1.71 115925 66 1744 105293 1.63 107037 67 1815 102817 1.73 104632 68 1742 104224 1.64 105966 69 1651 100784 1.61 102435 70 1651 100135 1.62 101786 71 1702 103841 1.61 105543 72 1657 99579 1.64 101236 73 1712 95578 1.76 97290 74 1573 94682 1.63 96255 75 1645 91382 1.77 93027 76 1554 91199 1.68 92753 77 1576 91395 1.70 92971 78 1533 88403 1.70 89936 79 1614 97175 1.63 98789 80 1417 87267 1.60 88684 81 1507 87362 1.70 88869 82 1328 81407 1.61 82735 83 1576 86732 1.78 88308 84 1501 83475 1.77 84976 85 736 41529 1.74 42265 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18424 886446 2.04 904870 2 18624 898057 2.03 916681 3 19139 831275 2.25 850414 4 18503 839009 2.16 857512 5 18366 817440 2.20 835806 6 17420 757361 2.25 774781 7 17227 787958 2.14 805185 8 17409 785832 2.17 803241 9 17259 788648 2.14 805907 10 16466 761873 2.12 778339 11 16970 753716 2.20 770686 12 16871 773297 2.14 790168 13 16104 735583 2.14 751687 14 16814 771586 2.13 788400 15 15844 703851 2.20 719695 16 16248 694750 2.29 710998 17 15516 679783 2.23 695299 18 14554 646873 2.20 661427 19 15171 648644 2.29 663815 20 14934 636618 2.29 651552 21 15512 677787 2.24 693299 22 14598 654060 2.18 668658 23 15058 643644 2.29 658702 24 14402 622867 2.26 637269 25 13590 601135 2.21 614725 26 13679 590025 2.27 603704 27 13627 577996 2.30 591623 28 13825 573121 2.36 586946 29 14301 586148 2.38 600449 30 13291 586965 2.21 600256 31 13388 571739 2.29 585127 32 14056 609136 2.26 623192 33 13352 562243 2.32 575595 34 13381 591261 2.21 604642 35 13243 558071 2.32 571314 36 13214 561328 2.30 574542 37 12682 528994 2.34 541676 38 12713 530019 2.34 542732 39 12562 526450 2.33 539012 40 12184 538272 2.21 550456 41 12013 520299 2.26 532312 42 12447 509424 2.39 521871 43 11441 504430 2.22 515871 44 11586 500063 2.26 511649 45 11402 485032 2.30 496434 46 10757 462904 2.27 473661 47 10600 467547 2.22 478147 48 10444 454157 2.25 464601 49 10945 467703 2.29 478648 50 10451 456572 2.24 467023 51 10223 458803 2.18 469026 52 10177 452194 2.20 462371 53 10135 439124 2.26 449259 54 10184 453377 2.20 463561 55 9975 430916 2.26 440891 56 9672 420040 2.25 429712 57 9765 420878 2.27 430643 58 9475 407373 2.27 416848 59 9227 415937 2.17 425164 60 9457 401582 2.30 411039 61 9096 396499 2.24 405595 62 9239 409627 2.21 418866 63 9325 397631 2.29 406956 64 9004 390754 2.25 399758 65 8959 385631 2.27 394590 66 8597 373904 2.25 382501 67 8679 365433 2.32 374112 68 8358 368539 2.22 376897 69 8546 373363 2.24 381909 70 7993 352909 2.21 360902 71 8123 350068 2.27 358191 72 8194 352020 2.27 360214 73 7986 354725 2.20 362711 74 7940 338941 2.29 346881 75 7945 340899 2.28 348844 76 7681 336148 2.23 343829 77 7709 332425 2.27 340134 78 7655 339939 2.20 347594 79 7357 326534 2.20 333891 80 7498 324908 2.26 332406 81 7215 316360 2.23 323575 82 7169 316293 2.22 323462 83 6777 305607 2.17 312384 84 6422 299221 2.10 305643 85 3352 142503 2.30 145855