CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 72321 170956 29.73 243277 2 72873 160153 31.27 233026 3 76485 167553 31.34 244038 4 74221 162958 31.29 237179 5 72982 162564 30.98 235546 6 70137 169555 29.26 239692 7 68803 171942 28.58 240745 8 64720 172982 27.23 237702 9 61677 168830 26.76 230507 10 64319 176277 26.73 240596 11 62100 173409 26.37 235509 12 63055 172977 26.71 236032 13 63221 171935 26.88 235156 14 61655 169168 26.71 230823 15 61569 171749 26.39 233318 16 60872 168948 26.49 229820 17 60136 167492 26.42 227628 18 59644 167228 26.29 226872 19 59270 168994 25.97 228264 20 60826 173205 25.99 234031 21 59594 171295 25.81 230889 22 58489 171841 25.39 230330 23 59691 169528 26.04 229219 24 59205 164764 26.43 223969 25 58965 167447 26.04 226412 26 59929 168453 26.24 228382 27 59501 172390 25.66 231891 28 58463 172946 25.26 231409 29 57570 165959 25.76 223529 30 56846 166891 25.41 223737 31 57704 171572 25.17 229276 32 56840 163868 25.75 220708 33 56481 162005 25.85 218486 34 58430 167698 25.84 226128 35 57299 166201 25.64 223500 36 56063 163336 25.55 219399 37 57219 163548 25.92 220767 38 57920 169880 25.43 227800 39 56377 161734 25.85 218111 40 56966 164333 25.74 221299 41 57278 160808 26.26 218086 42 56130 164075 25.49 220205 43 55981 165418 25.29 221399 44 56857 160645 26.14 217502 45 55451 152613 26.65 208064 46 54188 151897 26.29 206085 47 53916 159501 25.26 213417 48 53388 154684 25.66 208072 49 53266 158924 25.10 212190 50 53200 160722 24.87 213922 51 53688 155865 25.62 209553 52 51966 153230 25.33 205196 53 52640 148618 26.16 201258 54 51335 149296 25.59 200631 55 51032 146599 25.82 197631 56 50057 147551 25.33 197608 57 50117 148752 25.20 198869 58 51351 147520 25.82 198871 59 49931 145222 25.59 195153 60 49799 144545 25.62 194344 61 48529 144641 25.12 193170 62 48430 140988 25.57 189418 63 47711 136549 25.89 184260 64 47606 137262 25.75 184868 65 46654 136358 25.49 183012 66 46336 136093 25.40 182429 67 45548 138242 24.78 183790 68 45350 137721 24.77 183071 69 45648 134471 25.34 180119 70 45513 133124 25.48 178637 71 44754 133253 25.14 178007 72 44066 133262 24.85 177328 73 44132 134529 24.70 178661 74 42547 130763 24.55 173310 75 43544 129061 25.23 172605 76 42332 127296 24.96 169628 77 42441 126585 25.11 169026 78 41399 123779 25.06 165178 79 40368 126107 24.25 166475 80 41048 129017 24.14 170065 81 39590 121754 24.54 161344 82 38324 121760 23.94 160084 83 36868 113594 24.50 150462 84 33703 107336 23.90 141039 85 21909 73114 23.06 95023 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 9156 368196 2.43 377352 2 9403 356076 2.57 365479 3 9463 355569 2.59 365032 4 8881 351709 2.46 360590 5 8245 346261 2.33 354506 6 7830 340290 2.25 348120 7 7594 342059 2.17 349653 8 6853 341778 1.97 348631 9 6854 337502 1.99 344356 10 6782 334373 1.99 341155 11 6784 339704 1.96 346488 12 6766 354085 1.88 360851 13 6736 357275 1.85 364011 14 6629 361357 1.80 367986 15 6564 358044 1.80 364608 16 6261 361653 1.70 367914 17 6160 351170 1.72 357330 18 6711 352901 1.87 359612 19 6230 358344 1.71 364574 20 6124 355407 1.69 361531 21 6298 361582 1.71 367880 22 6200 361285 1.69 367485 23 6211 366565 1.67 372776 24 6162 367273 1.65 373435 25 6270 361222 1.71 367492 26 6378 355914 1.76 362292 27 6394 352565 1.78 358959 28 6155 359328 1.68 365483 29 6136 346875 1.74 353011 30 6424 353453 1.79 359877 31 5864 352408 1.64 358272 32 5890 352007 1.65 357897 33 6199 359465 1.70 365664 34 5861 354245 1.63 360106 35 5962 345180 1.70 351142 36 6076 354951 1.68 361027 37 6136 349658 1.72 355794 38 6058 346546 1.72 352604 39 6097 344257 1.74 350354 40 5907 352966 1.65 358873 41 5761 346326 1.64 352087 42 6041 345038 1.72 351079 43 6070 358249 1.67 364319 44 6016 353252 1.67 359268 45 6090 343616 1.74 349706 46 6228 352139 1.74 358367 47 5967 346756 1.69 352723 48 6084 344918 1.73 351002 49 6074 343451 1.74 349525 50 5738 340125 1.66 345863 51 6058 340775 1.75 346833 52 5886 344232 1.68 350118 53 5640 335580 1.65 341220 54 5702 335834 1.67 341536 55 5702 339978 1.65 345680 56 5720 332038 1.69 337758 57 6334 335362 1.85 341696 58 5543 325039 1.68 330582 59 5505 319969 1.69 325474 60 5739 321815 1.75 327554 61 5378 316462 1.67 321840 62 5326 311365 1.68 316691 63 5338 311836 1.68 317174 64 5271 310600 1.67 315871 65 5447 309267 1.73 314714 66 5705 310939 1.80 316644 67 5470 311498 1.73 316968 68 4973 296013 1.65 300986 69 5366 293187 1.80 298553 70 4928 299723 1.62 304651 71 4670 287745 1.60 292415 72 4608 286102 1.59 290710 73 5030 284933 1.73 289963 74 4610 281774 1.61 286384 75 5048 288976 1.72 294024 76 4944 285686 1.70 290630 77 5053 283925 1.75 288978 78 4918 275867 1.75 280785 79 4925 278567 1.74 283492 80 4840 266574 1.78 271414 81 4762 264546 1.77 269308 82 4450 263894 1.66 268344 83 4410 250133 1.73 254543 84 4088 226844 1.77 230932 85 2824 150962 1.84 153786 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 30941 993903 3.02 1024844 2 30478 969142 3.05 999620 3 33774 971032 3.36 1004806 4 29983 960735 3.03 990718 5 31678 967819 3.17 999497 6 33469 987336 3.28 1020805 7 29782 1013109 2.86 1042891 8 28938 1016905 2.77 1045843 9 32758 1043296 3.04 1076054 10 29385 1073704 2.66 1103089 11 29525 1083737 2.65 1113262 12 32488 1115135 2.83 1147623 13 29309 1120396 2.55 1149705 14 30521 1121423 2.65 1151944 15 32871 1129798 2.83 1162669 16 29866 1138461 2.56 1168327 17 30838 1138460 2.64 1169298 18 33548 1162987 2.80 1196535 19 29372 1170024 2.45 1199396 20 29264 1181061 2.42 1210325 21 33318 1177460 2.75 1210778 22 29106 1158683 2.45 1187789 23 29777 1145009 2.53 1174786 24 31657 1139462 2.70 1171119 25 29169 1147856 2.48 1177025 26 31335 1145039 2.66 1176374 27 32744 1146655 2.78 1179399 28 29524 1167768 2.47 1197292 29 29498 1159487 2.48 1188985 30 32960 1167984 2.74 1200944 31 28451 1156216 2.40 1184667 32 28993 1144585 2.47 1173578 33 31842 1146272 2.70 1178114 34 29063 1141096 2.48 1170159 35 30841 1146727 2.62 1177568 36 32617 1158244 2.74 1190861 37 28976 1147229 2.46 1176205 38 29321 1144195 2.50 1173516 39 31458 1153180 2.66 1184638 40 28061 1146571 2.39 1174632 41 28592 1131063 2.47 1159655 42 30690 1130665 2.64 1161355 43 26880 1114587 2.35 1141467 44 28757 1109643 2.53 1138400 45 30081 1104877 2.65 1134958 46 27462 1102535 2.43 1129997 47 27660 1095792 2.46 1123452 48 30150 1090494 2.69 1120644 49 26957 1101623 2.39 1128580 50 27564 1103643 2.44 1131207 51 30071 1106122 2.65 1136193 52 26414 1093307 2.36 1119721 53 27633 1087814 2.48 1115447 54 28978 1068308 2.64 1097286 55 26691 1062221 2.45 1088912 56 27453 1058786 2.53 1086239 57 28314 1048516 2.63 1076830 58 25436 1035304 2.40 1060740 59 25658 1035943 2.42 1061601 60 27994 1034717 2.63 1062711 61 25212 1046161 2.35 1071373 62 25789 1028182 2.45 1053971 63 27894 1037429 2.62 1065323 64 25398 1031295 2.40 1056693 65 26815 1007081 2.59 1033896 66 27318 997293 2.67 1024611 67 24220 986795 2.40 1011015 68 24635 980489 2.45 1005124 69 26798 973592 2.68 1000390 70 23205 969401 2.34 992606 71 23455 962874 2.38 986329 72 26292 961298 2.66 987590 73 23522 943075 2.43 966597 74 24312 938653 2.52 962965 75 25299 933701 2.64 959000 76 22614 919396 2.40 942010 77 23523 907088 2.53 930611 78 24383 896505 2.65 920888 79 22159 886778 2.44 908937 80 22385 874843 2.49 897228 81 23606 867532 2.65 891138 82 21160 852052 2.42 873212 83 21186 821050 2.52 842236 84 20974 754167 2.71 775141 85 11815 494821 2.33 506636 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 28746 138052 17.23 166798 2 31174 123952 20.10 155126 3 27533 115053 19.31 142586 4 30629 120914 20.21 151543 5 32643 122121 21.09 154764 6 31705 124262 20.33 155967 7 32194 108565 22.87 140759 8 34094 115679 22.76 149773 9 33232 101628 24.64 134860 10 31494 96559 24.59 128053 11 36595 104262 25.98 140857 12 35538 104058 25.46 139596 13 33709 101037 25.02 134746 14 32173 109663 22.68 141836 15 33395 92541 26.52 125936 16 32650 95954 25.39 128604 17 31283 91268 25.53 122551 18 29557 89402 24.85 118959 19 33987 99412 25.48 133399 20 30255 87850 25.62 118105 21 34882 94617 26.94 129499 22 30037 83540 26.45 113577 23 30252 86702 25.87 116954 24 29070 82176 26.13 111246 25 27894 82070 25.37 109964 26 27133 78758 25.62 105891 27 30967 86676 26.32 117643 28 28797 86619 24.95 115416 29 34143 87292 28.12 121435 30 29368 81883 26.40 111251 31 29875 79449 27.33 109324 32 26815 80094 25.08 106909 33 27357 75970 26.48 103327 34 29812 76125 28.14 105937 35 26461 81995 24.40 108456 36 26809 86716 23.62 113525 37 26607 76254 25.87 102861 38 25470 74905 25.37 100375 39 30260 83319 26.64 113579 40 24309 67131 26.58 91440 41 24581 70283 25.91 94864 42 24801 72847 25.40 97648 43 24246 76201 24.14 100447 44 23261 68028 25.48 91289 45 22690 66627 25.40 89317 46 22855 72257 24.03 95112 47 22815 68566 24.97 91381 48 23146 66232 25.90 89378 49 24749 66215 27.21 90964 50 21417 66249 24.43 87666 51 24375 63050 27.88 87425 52 22164 61870 26.38 84034 53 21096 61087 25.67 82183 54 21449 60893 26.05 82342 55 19530 57653 25.30 77183 56 19006 54746 25.77 73752 57 20544 55722 26.94 76266 58 19879 54720 26.65 74599 59 18638 51467 26.59 70105 60 19893 57653 25.65 77546 61 18764 57124 24.73 75888 62 20026 65690 23.36 85716 63 18588 51362 26.57 69950 64 17135 48625 26.06 65760 65 17964 47906 27.27 65870 66 16783 46289 26.61 63072 67 17566 48050 26.77 65616 68 15833 47770 24.89 63603 69 15910 52044 23.41 67954 70 16136 44547 26.59 60683 71 15660 44103 26.20 59763 72 15644 47065 24.95 62709 73 14887 42672 25.86 57559 74 14987 42336 26.14 57323 75 14670 42499 25.66 57169 76 15003 41326 26.63 56329 77 14792 39732 27.13 54524 78 15685 43530 26.49 59215 79 14243 40586 25.98 54829 80 13896 39635 25.96 53531 81 13658 37828 26.53 51486 82 13648 37223 26.83 50871 83 14101 38842 26.63 52943 84 13750 39246 25.95 52996 85 6290 17058 26.94 23348 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4422 295656 1.47 300078 2 4448 316812 1.38 321260 3 3776 268157 1.39 271933 4 3764 260636 1.42 264400 5 5068 318061 1.57 323129 6 4086 265343 1.52 269429 7 4216 267399 1.55 271615 8 3892 250172 1.53 254064 9 3928 241098 1.60 245026 10 3659 225947 1.59 229606 11 4211 242861 1.70 247072 12 3908 206368 1.86 210276 13 3424 202512 1.66 205936 14 3232 201518 1.58 204750 15 3850 201857 1.87 205707 16 3754 221710 1.67 225464 17 3501 209003 1.65 212504 18 3137 188201 1.64 191338 19 3214 190564 1.66 193778 20 3398 208144 1.61 211542 21 3237 187544 1.70 190781 22 2991 186326 1.58 189317 23 3187 197417 1.59 200604 24 2971 183461 1.59 186432 25 2865 177409 1.59 180274 26 3025 180848 1.65 183873 27 3407 212015 1.58 215422 28 3041 180097 1.66 183138 29 3003 183030 1.61 186033 30 3070 187540 1.61 190610 31 2970 182024 1.61 184994 32 3050 178534 1.68 181584 33 3008 183389 1.61 186397 34 2880 164499 1.72 167379 35 2679 155262 1.70 157941 36 2505 146800 1.68 149305 37 2644 155618 1.67 158262 38 2534 155927 1.60 158461 39 2405 143408 1.65 145813 40 2425 141794 1.68 144219 41 2426 144694 1.65 147120 42 2337 140578 1.64 142915 43 2514 147242 1.68 149756 44 2567 143287 1.76 145854 45 2263 134984 1.65 137247 46 2240 131188 1.68 133428 47 2446 142317 1.69 144763 48 2413 133672 1.77 136085 49 2290 130509 1.72 132799 50 2248 130643 1.69 132891 51 2487 126190 1.93 128677 52 2334 129584 1.77 131918 53 2062 126663 1.60 128725 54 2309 130384 1.74 132693 55 2077 122738 1.66 124815 56 2134 125943 1.67 128077 57 2467 131129 1.85 133596 58 1881 113547 1.63 115428 59 1969 114653 1.69 116622 60 1975 111868 1.73 113843 61 2076 117696 1.73 119772 62 1916 117221 1.61 119137 63 1938 113069 1.69 115007 64 1823 111581 1.61 113404 65 1981 113945 1.71 115926 66 1744 105296 1.63 107040 67 1815 102816 1.73 104631 68 1742 104226 1.64 105968 69 1652 100784 1.61 102436 70 1651 100132 1.62 101783 71 1702 103843 1.61 105545 72 1657 99578 1.64 101235 73 1713 95576 1.76 97289 74 1574 94683 1.64 96257 75 1645 91385 1.77 93030 76 1554 91198 1.68 92752 77 1576 91396 1.70 92972 78 1533 88401 1.70 89934 79 1614 97176 1.63 98790 80 1417 87268 1.60 88685 81 1508 87361 1.70 88869 82 1328 81410 1.61 82738 83 1577 86730 1.79 88307 84 1501 83477 1.77 84978 85 736 41529 1.74 42265 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18372 886443 2.03 904815 2 18616 898059 2.03 916675 3 19091 831294 2.24 850385 4 18500 839004 2.16 857504 5 18365 817439 2.20 835804 6 17418 757368 2.25 774786 7 17226 787970 2.14 805196 8 17405 785832 2.17 803237 9 17260 788648 2.14 805908 10 16464 761866 2.12 778330 11 16973 753718 2.20 770691 12 16864 773290 2.13 790154 13 16106 735585 2.14 751691 14 16815 771585 2.13 788400 15 15846 703854 2.20 719700 16 16244 694742 2.28 710986 17 15509 679779 2.23 695288 18 14548 646876 2.20 661424 19 15166 648646 2.28 663812 20 14923 636624 2.29 651547 21 15512 677788 2.24 693300 22 14588 654051 2.18 668639 23 15056 643633 2.29 658689 24 14401 622873 2.26 637274 25 13584 601149 2.21 614733 26 13684 590022 2.27 603706 27 13629 578000 2.30 591629 28 13819 573119 2.35 586938 29 14299 586149 2.38 600448 30 13288 586967 2.21 600255 31 13392 571735 2.29 585127 32 14051 609146 2.25 623197 33 13358 562247 2.32 575605 34 13376 591278 2.21 604654 35 13247 558079 2.32 571326 36 13221 561339 2.30 574560 37 12684 528995 2.34 541679 38 12718 530027 2.34 542745 39 12565 526445 2.33 539010 40 12183 538279 2.21 550462 41 12017 520301 2.26 532318 42 12446 509420 2.38 521866 43 11436 504434 2.22 515870 44 11587 500063 2.26 511650 45 11406 485043 2.30 496449 46 10753 462913 2.27 473666 47 10605 467549 2.22 478154 48 10454 454162 2.25 464616 49 10943 467703 2.29 478646 50 10451 456574 2.24 467025 51 10225 458811 2.18 469036 52 10178 452195 2.20 462373 53 10140 439125 2.26 449265 54 10182 453377 2.20 463559 55 9975 430916 2.26 440891 56 9674 420040 2.25 429714 57 9766 420879 2.27 430645 58 9474 407375 2.27 416849 59 9227 415939 2.17 425166 60 9457 401584 2.30 411041 61 9096 396501 2.24 405597 62 9237 409624 2.21 418861 63 9331 397639 2.29 406970 64 9003 390760 2.25 399763 65 8960 385635 2.27 394595 66 8599 373910 2.25 382509 67 8680 365441 2.32 374121 68 8360 368545 2.22 376905 69 8549 373365 2.24 381914 70 7995 352915 2.22 360910 71 8124 350072 2.27 358196 72 8196 352031 2.28 360227 73 7987 354725 2.20 362712 74 7942 338941 2.29 346883 75 7948 340902 2.28 348850 76 7684 336154 2.23 343838 77 7712 332423 2.27 340135 78 7659 339943 2.20 347602 79 7357 326543 2.20 333900 80 7501 324912 2.26 332413 81 7215 316365 2.23 323580 82 7171 316294 2.22 323465 83 6780 305609 2.17 312389 84 6423 299224 2.10 305647 85 3355 142506 2.30 145861