Using GATK jar /gscratch/srlab/programs/gatk-4.1.9.0/gatk-package-4.1.9.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -jar /gscratch/srlab/programs/gatk-4.1.9.0/gatk-package-4.1.9.0-local.jar HaplotypeCaller -R ../031722-haplo/Cvirginica_v300.fa -I ../031722-haplo/S12M.dedup-split-RG.bam -O S12M.variants.g.vcf --native-pair-hmm-threads 28 -ERC GVCF 14:03:05.365 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/gscratch/srlab/programs/gatk-4.1.9.0/gatk-package-4.1.9.0-local.jar!/com/intel/gkl/native/libgkl_compression.so Mar 17, 2022 2:03:05 PM shaded.cloud_nio.com.google.auth.oauth2.ComputeEngineCredentials runningOnComputeEngine INFO: Failed to detect whether we are running on Google Compute Engine. 14:03:05.633 INFO HaplotypeCaller - ------------------------------------------------------------ 14:03:05.634 INFO HaplotypeCaller - The Genome Analysis Toolkit (GATK) v4.1.9.0 14:03:05.634 INFO HaplotypeCaller - For support and documentation go to https://software.broadinstitute.org/gatk/ 14:03:05.634 INFO HaplotypeCaller - Executing as sr320@n2225.hyak.local on Linux v3.10.0-957.el7.x86_64 amd64 14:03:05.634 INFO HaplotypeCaller - Java runtime: OpenJDK 64-Bit Server VM v1.8.0_322-b06 14:03:05.634 INFO HaplotypeCaller - Start Date/Time: March 17, 2022 2:03:05 PM PDT 14:03:05.634 INFO HaplotypeCaller - ------------------------------------------------------------ 14:03:05.634 INFO HaplotypeCaller - ------------------------------------------------------------ 14:03:05.635 INFO HaplotypeCaller - HTSJDK Version: 2.23.0 14:03:05.635 INFO HaplotypeCaller - Picard Version: 2.23.3 14:03:05.635 INFO HaplotypeCaller - HTSJDK Defaults.COMPRESSION_LEVEL : 2 14:03:05.635 INFO HaplotypeCaller - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 14:03:05.636 INFO HaplotypeCaller - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 14:03:05.636 INFO HaplotypeCaller - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 14:03:05.636 INFO HaplotypeCaller - Deflater: IntelDeflater 14:03:05.636 INFO HaplotypeCaller - Inflater: IntelInflater 14:03:05.636 INFO HaplotypeCaller - GCS max retries/reopens: 20 14:03:05.636 INFO HaplotypeCaller - Requester pays: disabled 14:03:05.636 INFO HaplotypeCaller - Initializing engine 14:03:06.142 INFO HaplotypeCaller - Done initializing engine 14:03:06.144 INFO HaplotypeCallerEngine - Tool is in reference confidence mode and the annotation, the following changes will be made to any specified annotations: 'StrandBiasBySample' will be enabled. 'ChromosomeCounts', 'FisherStrand', 'StrandOddsRatio' and 'QualByDepth' annotations have been disabled 14:03:06.151 INFO HaplotypeCallerEngine - Standard Emitting and Calling confidence set to 0.0 for reference-model confidence output 14:03:06.151 INFO HaplotypeCallerEngine - All sites annotated with PLs forced to true for reference-model confidence output 14:03:06.167 INFO NativeLibraryLoader - Loading libgkl_utils.so from jar:file:/gscratch/srlab/programs/gatk-4.1.9.0/gatk-package-4.1.9.0-local.jar!/com/intel/gkl/native/libgkl_utils.so 14:03:06.169 INFO NativeLibraryLoader - Loading libgkl_pairhmm_omp.so from jar:file:/gscratch/srlab/programs/gatk-4.1.9.0/gatk-package-4.1.9.0-local.jar!/com/intel/gkl/native/libgkl_pairhmm_omp.so 14:03:06.226 INFO IntelPairHmm - Flush-to-zero (FTZ) is enabled when running PairHMM 14:03:06.227 INFO IntelPairHmm - Available threads: 28 14:03:06.227 INFO IntelPairHmm - Requested threads: 28 14:03:06.227 INFO PairHMM - Using the OpenMP multi-threaded AVX-accelerated native PairHMM implementation 14:03:06.265 INFO ProgressMeter - Starting traversal 14:03:06.265 INFO ProgressMeter - Current Locus Elapsed Minutes Regions Processed Regions/Minute 14:03:07.687 WARN InbreedingCoeff - InbreedingCoeff will not be calculated; at least 10 samples must have called genotypes 14:03:16.323 INFO ProgressMeter - NC_035780.1:60132 0.2 500 2982.7 14:03:26.371 INFO ProgressMeter - NC_035780.1:132355 0.3 1040 3103.7 14:03:34.496 WARN DepthPerSampleHC - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:03:34.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:03:34.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:03:34.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:03:34.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:03:36.830 INFO ProgressMeter - NC_035780.1:220261 0.5 1750 3435.3 14:03:39.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:03:39.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:03:42.292 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:03:46.858 INFO ProgressMeter - NC_035780.1:271675 0.7 2150 3177.9 14:03:47.108 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:03:56.870 INFO ProgressMeter - NC_035780.1:326588 0.8 2580 3059.0 14:04:07.432 INFO ProgressMeter - NC_035780.1:391575 1.0 3080 3021.2 14:04:09.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:04:17.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:04:17.443 INFO ProgressMeter - NC_035780.1:470719 1.2 3610 3043.1 14:04:27.585 INFO ProgressMeter - NC_035780.1:513237 1.4 3930 2899.7 14:04:28.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:04:29.746 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:04:38.214 INFO ProgressMeter - NC_035780.1:554316 1.5 4240 2766.8 14:04:47.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:04:48.408 INFO ProgressMeter - NC_035780.1:595403 1.7 4560 2678.6 14:04:55.874 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:04:58.464 INFO ProgressMeter - NC_035780.1:656751 1.9 5060 2705.9 14:05:05.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:05:09.635 INFO ProgressMeter - NC_035780.1:724607 2.1 5580 2713.8 14:05:20.057 INFO ProgressMeter - NC_035780.1:795291 2.2 6100 2735.6 14:05:30.209 INFO ProgressMeter - NC_035780.1:848694 2.4 6500 2709.4 14:05:33.328 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:05:33.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:05:41.752 INFO ProgressMeter - NC_035780.1:891783 2.6 6810 2627.9 14:05:44.840 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:05:44.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:05:52.115 INFO ProgressMeter - NC_035780.1:917366 2.8 6990 2528.8 14:06:02.699 INFO ProgressMeter - NC_035780.1:939738 2.9 7150 2431.5 14:06:13.974 INFO ProgressMeter - NC_035780.1:982142 3.1 7470 2387.7 14:06:24.143 INFO ProgressMeter - NC_035780.1:1019961 3.3 7780 2359.0 14:06:25.983 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:29.919 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:29.919 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:32.220 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:32.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:32.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:34.175 INFO ProgressMeter - NC_035780.1:1157319 3.5 8700 2510.7 14:06:35.908 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:37.330 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:37.331 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:39.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:39.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:44.623 INFO ProgressMeter - NC_035780.1:1310389 3.6 9700 2665.3 14:06:46.588 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:46.872 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:47.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:51.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:06:54.715 INFO ProgressMeter - NC_035780.1:1367616 3.8 10090 2650.0 14:07:05.408 INFO ProgressMeter - NC_035780.1:1455383 4.0 10790 2707.2 14:07:13.712 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:07:15.578 INFO ProgressMeter - NC_035780.1:1525011 4.2 11340 2729.1 14:07:25.958 INFO ProgressMeter - NC_035780.1:1617659 4.3 12010 2774.8 14:07:36.320 INFO ProgressMeter - NC_035780.1:1689362 4.5 12560 2790.5 14:07:38.850 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:07:39.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:07:46.848 INFO ProgressMeter - NC_035780.1:1755062 4.7 13020 2784.2 14:07:58.170 INFO ProgressMeter - NC_035780.1:1849736 4.9 13670 2809.8 14:08:08.225 INFO ProgressMeter - NC_035780.1:1917813 5.0 14120 2805.7 14:08:11.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:08:18.810 INFO ProgressMeter - NC_035780.1:1952285 5.2 14380 2760.6 14:08:22.664 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:08:29.913 INFO ProgressMeter - NC_035780.1:2031885 5.4 14930 2767.8 14:08:39.949 INFO ProgressMeter - NC_035780.1:2174320 5.6 15730 2828.4 14:08:50.276 INFO ProgressMeter - NC_035780.1:2232966 5.7 16160 2818.5 14:08:54.073 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:09:01.025 INFO ProgressMeter - NC_035780.1:2327931 5.9 16880 2854.9 14:09:11.163 INFO ProgressMeter - NC_035780.1:2386403 6.1 17320 2847.9 14:09:13.885 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:09:21.407 INFO ProgressMeter - NC_035780.1:2448594 6.3 17810 2848.5 14:09:32.008 INFO ProgressMeter - NC_035780.1:2514247 6.4 18330 2851.1 14:09:39.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:09:39.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:09:42.189 INFO ProgressMeter - NC_035780.1:2539455 6.6 18530 2808.1 14:09:52.400 INFO ProgressMeter - NC_035780.1:2607944 6.8 19080 2818.8 14:10:02.408 INFO ProgressMeter - NC_035780.1:2656094 6.9 19420 2800.0 14:10:08.752 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:10:12.591 INFO ProgressMeter - NC_035780.1:2700757 7.1 19750 2779.6 14:10:23.251 INFO ProgressMeter - NC_035780.1:2743260 7.3 20110 2761.2 14:10:31.790 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:10:33.264 INFO ProgressMeter - NC_035780.1:2797895 7.4 20550 2758.4 14:10:36.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:10:43.604 INFO ProgressMeter - NC_035780.1:2835858 7.6 20840 2734.1 14:10:54.234 INFO ProgressMeter - NC_035780.1:2895322 7.8 21290 2729.7 14:11:05.158 INFO ProgressMeter - NC_035780.1:2950860 8.0 21700 2718.8 14:11:08.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:11:15.905 INFO ProgressMeter - NC_035780.1:2996242 8.2 22050 2702.0 14:11:26.299 INFO ProgressMeter - NC_035780.1:3077633 8.3 22710 2725.0 14:11:33.021 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:11:36.365 INFO ProgressMeter - NC_035780.1:3113007 8.5 22970 2701.8 14:11:40.588 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:11:47.112 INFO ProgressMeter - NC_035780.1:3154008 8.7 23280 2681.8 14:11:51.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:11:57.913 INFO ProgressMeter - NC_035780.1:3178242 8.9 23470 2648.7 14:12:07.976 INFO ProgressMeter - NC_035780.1:3223000 9.0 23830 2639.4 14:12:16.253 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:12:18.190 INFO ProgressMeter - NC_035780.1:3292229 9.2 24420 2654.7 14:12:26.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:12:26.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:12:29.282 INFO ProgressMeter - NC_035780.1:3381325 9.4 25020 2666.3 14:12:29.459 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:12:35.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:12:39.539 INFO ProgressMeter - NC_035780.1:3474459 9.6 25710 2690.9 14:12:42.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:12:46.283 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:12:49.805 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:12:49.806 INFO ProgressMeter - NC_035780.1:3534115 9.7 26120 2685.7 14:12:49.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:12:52.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:01.484 INFO ProgressMeter - NC_035780.1:3649277 9.9 26890 2710.6 14:13:03.243 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:03.243 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:11.778 INFO ProgressMeter - NC_035780.1:3784054 10.1 27810 2755.7 14:13:12.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:15.025 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:15.026 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:15.026 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:15.026 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:20.831 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:21.558 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:21.783 INFO ProgressMeter - NC_035780.1:3988766 10.3 29210 2847.4 14:13:26.339 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:28.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:31.793 INFO ProgressMeter - NC_035780.1:4191633 10.4 30590 2934.2 14:13:38.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:40.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:41.994 INFO ProgressMeter - NC_035780.1:4404898 10.6 32110 3030.5 14:13:44.339 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:46.235 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:46.235 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:46.235 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:46.239 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:50.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:50.745 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:51.371 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:51.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:51.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:51.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:13:52.212 INFO ProgressMeter - NC_035780.1:4558348 10.8 33180 3082.0 14:13:54.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:00.485 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:00.486 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:02.220 INFO ProgressMeter - NC_035780.1:4800954 10.9 34740 3177.7 14:14:02.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:08.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:08.019 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:09.518 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:10.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:10.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:10.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:12.232 INFO ProgressMeter - NC_035780.1:5069529 11.1 36420 3281.2 14:14:12.654 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:13.058 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:13.871 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:13.890 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:16.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:16.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:16.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:17.221 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:20.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:20.082 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:20.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:21.417 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:21.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:21.500 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:22.250 INFO ProgressMeter - NC_035780.1:5308972 11.3 37970 3370.2 14:14:27.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:27.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:27.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:27.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:32.336 INFO ProgressMeter - NC_035780.1:5539966 11.4 39520 3456.2 14:14:41.790 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:41.790 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:42.425 INFO ProgressMeter - NC_035780.1:5628368 11.6 40130 3458.7 14:14:42.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:43.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:43.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:47.069 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:47.827 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:48.865 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:49.051 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:50.933 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:50.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:52.683 INFO ProgressMeter - NC_035780.1:5849255 11.8 41610 3534.2 14:14:52.921 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:53.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:58.857 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:14:58.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:02.797 INFO ProgressMeter - NC_035780.1:6030768 11.9 42960 3597.3 14:15:09.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:09.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:12.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:12.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:12.831 INFO ProgressMeter - NC_035780.1:6105893 12.1 43510 3593.1 14:15:22.994 INFO ProgressMeter - NC_035780.1:6175905 12.3 43980 3581.8 14:15:23.309 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:24.040 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:30.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:30.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:30.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:30.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:30.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:30.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:30.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:33.078 INFO ProgressMeter - NC_035780.1:6341949 12.4 45080 3621.8 14:15:43.020 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:43.078 INFO ProgressMeter - NC_035780.1:6405951 12.6 45590 3614.4 14:15:49.707 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:15:53.224 INFO ProgressMeter - NC_035780.1:6465339 12.8 46070 3604.1 14:16:03.243 INFO ProgressMeter - NC_035780.1:6512676 12.9 46450 3587.0 14:16:13.280 INFO ProgressMeter - NC_035780.1:6578190 13.1 46890 3574.8 14:16:23.360 INFO ProgressMeter - NC_035780.1:6795411 13.3 48500 3650.8 14:16:23.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:16:24.728 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:16:24.728 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:16:24.728 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:16:32.776 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:16:32.777 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:16:33.361 INFO ProgressMeter - NC_035780.1:6995819 13.5 49970 3714.8 14:16:33.382 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:16:43.634 INFO ProgressMeter - NC_035780.1:7071892 13.6 50580 3712.9 14:16:54.538 INFO ProgressMeter - NC_035780.1:7140109 13.8 51140 3704.6 14:17:04.915 INFO ProgressMeter - NC_035780.1:7200246 14.0 51650 3695.2 14:17:10.101 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:17:14.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:17:14.957 INFO ProgressMeter - NC_035780.1:7313722 14.1 52510 3712.3 14:17:16.484 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:17:20.774 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:17:24.974 INFO ProgressMeter - NC_035780.1:7402196 14.3 53130 3712.3 14:17:35.293 INFO ProgressMeter - NC_035780.1:7449232 14.5 53500 3693.8 14:17:40.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:17:40.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:17:45.299 INFO ProgressMeter - NC_035780.1:7529598 14.7 54000 3685.9 14:17:50.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:17:52.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:17:55.429 INFO ProgressMeter - NC_035780.1:7604009 14.8 54540 3680.3 14:18:05.548 INFO ProgressMeter - NC_035780.1:7668526 15.0 55030 3671.6 14:18:09.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:18:15.561 INFO ProgressMeter - NC_035780.1:7764931 15.2 55780 3680.7 14:18:16.089 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:18:17.648 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:18:25.567 INFO ProgressMeter - NC_035780.1:7893011 15.3 56550 3690.8 14:18:36.394 INFO ProgressMeter - NC_035780.1:7956218 15.5 57050 3680.1 14:18:36.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:18:46.446 INFO ProgressMeter - NC_035780.1:8007722 15.7 57440 3665.7 14:18:56.686 INFO ProgressMeter - NC_035780.1:8102196 15.8 58180 3672.9 14:19:07.398 INFO ProgressMeter - NC_035780.1:8145938 16.0 58530 3653.8 14:19:17.459 INFO ProgressMeter - NC_035780.1:8210938 16.2 59060 3648.7 14:19:27.673 INFO ProgressMeter - NC_035780.1:8272056 16.4 59530 3639.5 14:19:37.783 INFO ProgressMeter - NC_035780.1:8316659 16.5 59890 3624.1 14:19:43.558 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:19:48.221 INFO ProgressMeter - NC_035780.1:8408807 16.7 60640 3631.3 14:19:49.663 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:19:58.387 INFO ProgressMeter - NC_035780.1:8507040 16.9 61440 3642.2 14:20:08.973 INFO ProgressMeter - NC_035780.1:8551920 17.0 61790 3625.1 14:20:13.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:20:19.089 INFO ProgressMeter - NC_035780.1:8644485 17.2 62470 3629.1 14:20:29.270 INFO ProgressMeter - NC_035780.1:8723148 17.4 63120 3631.0 14:20:40.083 INFO ProgressMeter - NC_035780.1:8781490 17.6 63590 3620.5 14:20:44.442 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:20:44.442 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:20:50.149 INFO ProgressMeter - NC_035780.1:8853771 17.7 64200 3620.7 14:21:00.726 INFO ProgressMeter - NC_035780.1:8887793 17.9 64460 3599.6 14:21:06.749 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:21:11.099 INFO ProgressMeter - NC_035780.1:8961822 18.1 65070 3598.9 14:21:21.765 INFO ProgressMeter - NC_035780.1:9009555 18.3 65450 3584.7 14:21:33.082 INFO ProgressMeter - NC_035780.1:9082545 18.4 65920 3573.5 14:21:43.226 INFO ProgressMeter - NC_035780.1:9117258 18.6 66180 3555.0 14:21:55.092 INFO ProgressMeter - NC_035780.1:9138731 18.8 66360 3527.2 14:22:02.705 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:02.705 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:05.308 INFO ProgressMeter - NC_035780.1:9159862 19.0 66530 3504.5 14:22:05.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:14.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:15.391 INFO ProgressMeter - NC_035780.1:9387582 19.2 68030 3552.1 14:22:17.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:23.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:23.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:24.514 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:24.713 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:25.429 INFO ProgressMeter - NC_035780.1:9705212 19.3 70240 3635.7 14:22:35.451 INFO ProgressMeter - NC_035780.1:9929325 19.5 71770 3683.1 14:22:37.051 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:45.011 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:45.012 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:45.526 INFO ProgressMeter - NC_035780.1:10136405 19.7 73180 3723.3 14:22:47.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:47.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:52.089 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:52.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:22:55.541 INFO ProgressMeter - NC_035780.1:10365572 19.8 74640 3765.7 14:23:05.554 INFO ProgressMeter - NC_035780.1:10608774 20.0 76220 3813.3 14:23:05.662 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:23:15.734 INFO ProgressMeter - NC_035780.1:10823876 20.2 77640 3851.6 14:23:16.954 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:23:16.955 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:23:16.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:23:24.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:23:27.434 INFO ProgressMeter - NC_035780.1:10942821 20.4 78440 3854.0 14:23:34.507 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:23:37.542 INFO ProgressMeter - NC_035780.1:10994794 20.5 78880 3843.8 14:23:47.727 INFO ProgressMeter - NC_035780.1:11077704 20.7 79530 3843.7 14:23:57.886 INFO ProgressMeter - NC_035780.1:11145936 20.9 80080 3838.9 14:24:08.067 INFO ProgressMeter - NC_035780.1:11192631 21.0 80470 3826.4 14:24:18.249 INFO ProgressMeter - NC_035780.1:11249565 21.2 80940 3818.0 14:24:26.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:24:28.627 INFO ProgressMeter - NC_035780.1:11336025 21.4 81570 3816.6 14:24:29.866 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:24:35.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:24:38.924 INFO ProgressMeter - NC_035780.1:11378173 21.5 81880 3800.5 14:24:48.064 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:24:48.139 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:24:48.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:24:49.979 INFO ProgressMeter - NC_035780.1:11430127 21.7 82250 3785.3 14:25:00.324 INFO ProgressMeter - NC_035780.1:11657527 21.9 83940 3832.7 14:25:07.443 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:25:10.676 INFO ProgressMeter - NC_035780.1:11914349 22.1 85590 3877.5 14:25:15.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:25:18.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:25:20.710 INFO ProgressMeter - NC_035780.1:12078083 22.2 86740 3900.0 14:25:26.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:25:30.885 INFO ProgressMeter - NC_035780.1:12267789 22.4 88000 3926.8 14:25:35.190 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:25:35.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:25:38.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:25:40.896 INFO ProgressMeter - NC_035780.1:12531328 22.6 89780 3976.6 14:25:46.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:25:50.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:25:50.896 INFO ProgressMeter - NC_035780.1:12862983 22.7 91730 4033.2 14:25:55.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:26:01.068 INFO ProgressMeter - NC_035780.1:13061686 22.9 93130 4064.4 14:26:06.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:26:06.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:26:09.613 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:26:11.338 INFO ProgressMeter - NC_035780.1:13135487 23.1 93670 4057.7 14:26:21.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:26:21.411 INFO ProgressMeter - NC_035780.1:13197551 23.3 94160 4049.5 14:26:31.597 INFO ProgressMeter - NC_035780.1:13239254 23.4 94480 4033.8 14:26:42.079 INFO ProgressMeter - NC_035780.1:13281304 23.6 94840 4019.2 14:26:45.216 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:26:45.216 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:26:52.131 INFO ProgressMeter - NC_035780.1:13338280 23.8 95240 4007.7 14:27:02.338 INFO ProgressMeter - NC_035780.1:13427875 23.9 95970 4009.7 14:27:04.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:27:13.086 INFO ProgressMeter - NC_035780.1:13600835 24.1 97110 4027.2 14:27:17.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:27:23.248 INFO ProgressMeter - NC_035780.1:13653118 24.3 97540 4016.8 14:27:30.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:27:32.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:27:33.313 INFO ProgressMeter - NC_035780.1:13814232 24.5 98710 4037.1 14:27:38.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:27:41.246 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:27:41.341 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:27:41.341 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:27:41.341 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:27:43.694 INFO ProgressMeter - NC_035780.1:14109921 24.6 100650 4087.5 14:27:50.199 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:27:53.699 INFO ProgressMeter - NC_035780.1:14178524 24.8 101150 4080.2 14:27:58.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:04.031 INFO ProgressMeter - NC_035780.1:14447319 25.0 103010 4126.5 14:28:06.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:06.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:14.638 INFO ProgressMeter - NC_035780.1:14619716 25.1 104150 4142.9 14:28:17.488 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:19.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:20.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:21.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:21.761 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:22.361 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:22.361 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:22.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:22.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:22.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:22.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:22.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:22.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:23.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:24.258 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:24.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:24.679 INFO ProgressMeter - NC_035780.1:15153567 25.3 106950 4226.1 14:28:34.495 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:34.689 INFO ProgressMeter - NC_035780.1:15303326 25.5 107950 4237.7 14:28:35.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:28:45.056 INFO ProgressMeter - NC_035780.1:15365101 25.6 108310 4223.2 14:28:55.062 INFO ProgressMeter - NC_035780.1:15378609 25.8 108410 4199.8 14:29:05.099 INFO ProgressMeter - NC_035780.1:15449618 26.0 108980 4194.7 14:29:09.325 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:29:15.104 INFO ProgressMeter - NC_035780.1:15550328 26.1 109800 4199.3 14:29:25.243 INFO ProgressMeter - NC_035780.1:15621610 26.3 110340 4192.8 14:29:31.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:29:35.661 INFO ProgressMeter - NC_035780.1:15700288 26.5 110910 4186.9 14:29:37.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:29:37.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:29:46.479 INFO ProgressMeter - NC_035780.1:15776676 26.7 111490 4180.3 14:29:56.570 INFO ProgressMeter - NC_035780.1:15826682 26.8 111910 4169.8 14:30:06.683 INFO ProgressMeter - NC_035780.1:15861152 27.0 112190 4154.1 14:30:09.647 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:11.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:11.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:11.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:11.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:12.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:17.038 INFO ProgressMeter - NC_035780.1:15999827 27.2 113160 4163.4 14:30:21.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:27.317 INFO ProgressMeter - NC_035780.1:16094483 27.4 113770 4159.6 14:30:28.050 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:28.575 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:28.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:28.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:28.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:28.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:30.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:34.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:34.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:34.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:35.235 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:35.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:35.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:37.772 INFO ProgressMeter - NC_035780.1:16202943 27.5 114490 4159.5 14:30:45.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:47.866 INFO ProgressMeter - NC_035780.1:16270661 27.7 115030 4153.7 14:30:50.146 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:30:57.958 INFO ProgressMeter - NC_035780.1:16334862 27.9 115520 4146.2 14:31:00.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:31:00.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:31:08.091 INFO ProgressMeter - NC_035780.1:16394588 28.0 115930 4135.9 14:31:15.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:31:18.124 INFO ProgressMeter - NC_035780.1:16470708 28.2 116560 4133.7 14:31:27.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:31:28.162 INFO ProgressMeter - NC_035780.1:16549598 28.4 117200 4131.9 14:31:28.182 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:31:28.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:31:28.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:31:31.002 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:31:38.767 INFO ProgressMeter - NC_035780.1:16613475 28.5 117680 4123.1 14:31:42.600 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:31:42.600 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:31:49.349 INFO ProgressMeter - NC_035780.1:16670471 28.7 118140 4113.8 14:31:59.575 INFO ProgressMeter - NC_035780.1:16730805 28.9 118610 4105.8 14:32:09.878 INFO ProgressMeter - NC_035780.1:16814746 29.1 119270 4104.2 14:32:12.822 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:32:12.823 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:32:12.823 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:32:16.785 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:32:16.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:32:16.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:32:16.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:32:16.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:32:17.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:32:17.406 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:32:20.089 INFO ProgressMeter - NC_035780.1:16891430 29.2 119750 4096.8 14:32:30.376 INFO ProgressMeter - NC_035780.1:16956863 29.4 120210 4088.5 14:32:31.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:32:40.485 INFO ProgressMeter - NC_035780.1:17025268 29.6 120740 4083.1 14:32:41.894 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:32:51.360 INFO ProgressMeter - NC_035780.1:17093304 29.8 121250 4075.4 14:32:58.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:33:00.880 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:33:01.579 INFO ProgressMeter - NC_035780.1:17361196 29.9 122740 4102.0 14:33:01.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:33:05.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:33:05.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:33:11.630 INFO ProgressMeter - NC_035780.1:17422480 30.1 123190 4094.1 14:33:18.772 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:33:22.034 INFO ProgressMeter - NC_035780.1:17502257 30.3 123710 4087.9 14:33:32.238 INFO ProgressMeter - NC_035780.1:17529640 30.4 123900 4071.3 14:33:35.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:33:36.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:33:42.288 INFO ProgressMeter - NC_035780.1:17656025 30.6 124670 4074.1 14:33:52.775 INFO ProgressMeter - NC_035780.1:17711174 30.8 125090 4064.6 14:34:03.381 INFO ProgressMeter - NC_035780.1:17735582 31.0 125270 4047.2 14:34:12.276 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:13.870 INFO ProgressMeter - NC_035780.1:17777983 31.1 125610 4035.4 14:34:15.871 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:19.289 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:25.060 INFO ProgressMeter - NC_035780.1:17895069 31.3 126400 4036.6 14:34:28.770 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:30.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:35.685 INFO ProgressMeter - NC_035780.1:17981724 31.5 127010 4033.3 14:34:36.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:36.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:39.964 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:42.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:45.701 INFO ProgressMeter - NC_035780.1:18226556 31.7 128540 4060.4 14:34:45.964 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:48.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:48.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:49.181 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:51.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:54.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:54.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:55.725 INFO ProgressMeter - NC_035780.1:18472409 31.8 130050 4086.5 14:34:55.907 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:55.907 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:57.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:34:57.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:03.544 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:03.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:03.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:03.584 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:03.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:03.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:05.817 INFO ProgressMeter - NC_035780.1:18678502 32.0 131260 4102.8 14:35:05.993 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:05.993 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:06.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:06.517 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:06.517 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:15.907 INFO ProgressMeter - NC_035780.1:18854492 32.2 132230 4111.5 14:35:16.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:25.991 INFO ProgressMeter - NC_035780.1:19009269 32.3 133000 4114.0 14:35:26.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:26.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:27.255 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:29.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:29.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:37.046 INFO ProgressMeter - NC_035780.1:19232912 32.5 134260 4129.4 14:35:40.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:35:47.113 INFO ProgressMeter - NC_035780.1:19344322 32.7 135030 4131.8 14:35:57.297 INFO ProgressMeter - NC_035780.1:19403991 32.9 135450 4123.2 14:36:07.582 INFO ProgressMeter - NC_035780.1:19469706 33.0 135970 4117.6 14:36:11.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:11.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:11.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:11.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:11.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:17.659 INFO ProgressMeter - NC_035780.1:19539809 33.2 136530 4113.6 14:36:21.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:22.063 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:27.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:27.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:27.826 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:27.840 INFO ProgressMeter - NC_035780.1:19596045 33.4 136970 4105.9 14:36:30.786 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:36.277 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:36.277 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:37.864 INFO ProgressMeter - NC_035780.1:19659704 33.5 137420 4098.8 14:36:40.518 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:40.518 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:40.518 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:36:48.166 INFO ProgressMeter - NC_035780.1:19693330 33.7 137680 4085.7 14:36:58.753 INFO ProgressMeter - NC_035780.1:19750519 33.9 138100 4076.8 14:37:07.579 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:37:09.099 INFO ProgressMeter - NC_035780.1:19818836 34.0 138600 4070.8 14:37:19.132 INFO ProgressMeter - NC_035780.1:19862141 34.2 138920 4060.3 14:37:29.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:37:29.710 INFO ProgressMeter - NC_035780.1:19939463 34.4 139510 4056.6 14:37:40.155 INFO ProgressMeter - NC_035780.1:19989068 34.6 139910 4047.8 14:37:49.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:37:50.183 INFO ProgressMeter - NC_035780.1:20053070 34.7 140460 4044.1 14:37:53.338 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:37:53.338 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:38:00.192 INFO ProgressMeter - NC_035780.1:20191189 34.9 141390 4051.4 14:38:10.240 INFO ProgressMeter - NC_035780.1:20321094 35.1 142350 4059.5 14:38:21.043 INFO ProgressMeter - NC_035780.1:20373624 35.2 142780 4050.9 14:38:24.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:38:31.092 INFO ProgressMeter - NC_035780.1:20448597 35.4 143310 4046.7 14:38:41.318 INFO ProgressMeter - NC_035780.1:20498385 35.6 143730 4039.2 14:38:51.610 INFO ProgressMeter - NC_035780.1:20524964 35.8 143950 4025.9 14:39:01.853 INFO ProgressMeter - NC_035780.1:20578752 35.9 144380 4018.8 14:39:06.743 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:39:12.050 INFO ProgressMeter - NC_035780.1:20640494 36.1 144870 4013.4 14:39:22.513 INFO ProgressMeter - NC_035780.1:20717747 36.3 145410 4009.0 14:39:32.828 INFO ProgressMeter - NC_035780.1:20801806 36.4 145940 4004.6 14:39:39.678 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:39:43.086 INFO ProgressMeter - NC_035780.1:20886524 36.6 146530 4002.1 14:39:43.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:39:44.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:39:46.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:39:52.847 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:39:53.133 INFO ProgressMeter - NC_035780.1:21058342 36.8 147560 4011.8 14:39:56.288 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:03.165 INFO ProgressMeter - NC_035780.1:21171676 36.9 148240 4012.1 14:40:12.001 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:13.193 INFO ProgressMeter - NC_035780.1:21226654 37.1 148650 4005.1 14:40:13.313 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:23.288 INFO ProgressMeter - NC_035780.1:21307428 37.3 149160 4000.7 14:40:23.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:25.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:25.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:25.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:28.271 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:32.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:33.386 INFO ProgressMeter - NC_035780.1:21502341 37.5 150330 4013.9 14:40:43.394 INFO ProgressMeter - NC_035780.1:21609555 37.6 150990 4013.7 14:40:43.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:43.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:44.038 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:47.074 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:47.074 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:48.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:40:53.985 INFO ProgressMeter - NC_035780.1:21699032 37.8 151590 4010.8 14:40:56.894 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:41:02.710 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:41:04.023 INFO ProgressMeter - NC_035780.1:21805986 38.0 152320 4012.4 14:41:04.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:41:07.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:41:14.172 INFO ProgressMeter - NC_035780.1:21872454 38.1 152750 4005.8 14:41:24.608 INFO ProgressMeter - NC_035780.1:21933401 38.3 153230 4000.2 14:41:35.112 INFO ProgressMeter - NC_035780.1:21955736 38.5 153390 3986.1 14:41:45.836 INFO ProgressMeter - NC_035780.1:22000167 38.7 153740 3976.8 14:41:47.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:41:51.541 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:41:56.117 INFO ProgressMeter - NC_035780.1:22039753 38.8 154000 3965.9 14:42:04.255 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:06.883 INFO ProgressMeter - NC_035780.1:22146052 39.0 154660 3964.6 14:42:16.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:17.176 INFO ProgressMeter - NC_035780.1:22199958 39.2 155010 3956.2 14:42:19.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:21.463 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:27.090 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:27.090 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:27.259 INFO ProgressMeter - NC_035780.1:22266328 39.3 155450 3950.5 14:42:32.999 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:37.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:37.288 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:37.626 INFO ProgressMeter - NC_035780.1:22352331 39.5 155940 3945.6 14:42:44.779 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:46.157 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:47.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:47.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:47.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:47.713 INFO ProgressMeter - NC_035780.1:22494679 39.7 156760 3949.5 14:42:50.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:50.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:42:57.725 INFO ProgressMeter - NC_035780.1:22602185 39.9 157470 3950.8 14:43:02.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:43:02.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:43:07.948 INFO ProgressMeter - NC_035780.1:22667869 40.0 157940 3945.7 14:43:18.193 INFO ProgressMeter - NC_035780.1:22736700 40.2 158410 3940.7 14:43:19.675 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:43:19.753 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:43:28.871 INFO ProgressMeter - NC_035780.1:22772456 40.4 158660 3929.5 14:43:39.620 INFO ProgressMeter - NC_035780.1:22819370 40.6 159060 3922.0 14:43:47.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:43:47.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:43:47.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:43:47.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:43:47.283 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:43:49.642 INFO ProgressMeter - NC_035780.1:22833767 40.7 159170 3908.6 14:43:52.749 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:43:59.790 INFO ProgressMeter - NC_035780.1:22848424 40.9 159270 3894.9 14:44:01.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:44:01.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:44:10.111 INFO ProgressMeter - NC_035780.1:22892827 41.1 159550 3885.4 14:44:20.720 INFO ProgressMeter - NC_035780.1:22919494 41.2 159740 3873.3 14:44:30.850 INFO ProgressMeter - NC_035780.1:22959628 41.4 160050 3865.0 14:44:34.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:44:39.355 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:44:40.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:44:40.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:44:40.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:44:40.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:44:40.885 INFO ProgressMeter - NC_035780.1:23033244 41.6 160550 3861.5 14:44:51.005 INFO ProgressMeter - NC_035780.1:23097622 41.7 161040 3857.6 14:44:58.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:44:58.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:44:58.764 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:44:58.764 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:44:59.901 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:01.916 INFO ProgressMeter - NC_035780.1:23141691 41.9 161350 3848.3 14:45:02.251 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:06.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:10.367 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:10.407 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:10.407 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:12.929 INFO ProgressMeter - NC_035780.1:23196706 42.1 161740 3840.8 14:45:14.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:24.029 INFO ProgressMeter - NC_035780.1:23262187 42.3 162170 3834.2 14:45:33.371 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:34.211 INFO ProgressMeter - NC_035780.1:23331166 42.5 162680 3830.9 14:45:44.643 INFO ProgressMeter - NC_035780.1:23380323 42.6 163010 3823.0 14:45:45.015 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:47.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:47.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:48.449 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:52.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:52.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:45:54.669 INFO ProgressMeter - NC_035780.1:23599410 42.8 164230 3836.5 14:46:04.911 INFO ProgressMeter - NC_035780.1:23708352 43.0 164960 3838.3 14:46:06.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:46:08.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:46:16.639 INFO ProgressMeter - NC_035780.1:23778990 43.2 165470 3832.7 14:46:26.717 INFO ProgressMeter - NC_035780.1:23821655 43.3 165770 3824.8 14:46:36.977 INFO ProgressMeter - NC_035780.1:23868150 43.5 166130 3818.0 14:46:47.183 INFO ProgressMeter - NC_035780.1:23903208 43.7 166390 3809.1 14:46:57.250 INFO ProgressMeter - NC_035780.1:23955095 43.8 166810 3804.1 14:47:07.369 INFO ProgressMeter - NC_035780.1:24015876 44.0 167270 3800.0 14:47:08.442 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:47:11.506 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:47:12.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:47:17.421 INFO ProgressMeter - NC_035780.1:24089569 44.2 167720 3795.8 14:47:25.945 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:47:26.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:47:27.938 INFO ProgressMeter - NC_035780.1:24153348 44.4 168110 3789.6 14:47:36.042 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:47:38.152 INFO ProgressMeter - NC_035780.1:24211320 44.5 168490 3783.6 14:47:49.369 INFO ProgressMeter - NC_035780.1:24252298 44.7 168800 3774.7 14:47:54.115 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:47:54.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:47:54.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:47:59.565 INFO ProgressMeter - NC_035780.1:24282805 44.9 169000 3764.9 14:48:02.712 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:04.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:04.455 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:04.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:07.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:07.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:07.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:07.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:09.636 INFO ProgressMeter - NC_035780.1:24426880 45.1 169800 3768.6 14:48:09.674 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:11.548 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:11.548 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:11.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:20.016 INFO ProgressMeter - NC_035780.1:24494375 45.2 170200 3763.1 14:48:27.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:27.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:27.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:30.284 INFO ProgressMeter - NC_035780.1:24553762 45.4 170670 3759.2 14:48:34.945 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:40.671 INFO ProgressMeter - NC_035780.1:24626947 45.6 171050 3753.3 14:48:47.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:47.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:50.796 INFO ProgressMeter - NC_035780.1:24734726 45.7 171620 3751.9 14:48:51.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:48:59.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:49:01.834 INFO ProgressMeter - NC_035780.1:24753399 45.9 171740 3739.5 14:49:09.648 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:49:11.583 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:49:12.643 INFO ProgressMeter - NC_035780.1:24778668 46.1 171900 3728.3 14:49:21.896 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:49:22.904 INFO ProgressMeter - NC_035780.1:24859158 46.3 172460 3726.7 14:49:22.985 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:49:33.352 INFO ProgressMeter - NC_035780.1:24942513 46.5 173070 3725.8 14:49:37.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:49:43.680 INFO ProgressMeter - NC_035780.1:25004415 46.6 173530 3721.9 14:49:46.355 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:49:49.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:49:49.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:49:49.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:49:53.858 INFO ProgressMeter - NC_035780.1:25060052 46.8 173980 3718.1 14:49:55.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:49:58.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:03.892 INFO ProgressMeter - NC_035780.1:25150801 47.0 174600 3718.0 14:50:13.914 INFO ProgressMeter - NC_035780.1:25199263 47.1 174970 3712.7 14:50:20.568 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:20.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:20.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:20.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:21.995 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:22.289 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:22.289 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:24.481 INFO ProgressMeter - NC_035780.1:25242751 47.3 175300 3705.8 14:50:24.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:25.600 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:26.075 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:26.075 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:34.579 INFO ProgressMeter - NC_035780.1:25342025 47.5 175930 3706.0 14:50:45.033 INFO ProgressMeter - NC_035780.1:25407913 47.6 176410 3702.5 14:50:52.275 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:50:55.070 INFO ProgressMeter - NC_035780.1:25462365 47.8 176750 3696.7 14:51:00.243 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:51:00.243 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:51:00.243 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:51:00.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:51:05.087 INFO ProgressMeter - NC_035780.1:25530159 48.0 177270 3694.6 14:51:08.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:51:08.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:51:15.326 INFO ProgressMeter - NC_035780.1:25616321 48.2 177950 3695.7 14:51:25.491 INFO ProgressMeter - NC_035780.1:25695162 48.3 178480 3693.7 14:51:26.896 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:51:36.215 INFO ProgressMeter - NC_035780.1:25747765 48.5 178860 3687.9 14:51:38.181 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:51:38.448 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:51:46.236 INFO ProgressMeter - NC_035780.1:25825260 48.7 179380 3685.9 14:51:56.255 INFO ProgressMeter - NC_035780.1:25878421 48.8 179810 3682.1 14:52:02.865 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:52:06.474 INFO ProgressMeter - NC_035780.1:25918384 49.0 180100 3675.2 14:52:17.036 INFO ProgressMeter - NC_035780.1:25942782 49.2 180290 3666.0 14:52:28.049 INFO ProgressMeter - NC_035780.1:25984891 49.4 180630 3659.2 14:52:30.504 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:52:32.121 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:52:38.331 INFO ProgressMeter - NC_035780.1:26063491 49.5 181220 3658.5 14:52:48.968 INFO ProgressMeter - NC_035780.1:26109798 49.7 181560 3652.3 14:53:01.029 INFO ProgressMeter - NC_035780.1:26161369 49.9 181920 3644.8 14:53:11.151 INFO ProgressMeter - NC_035780.1:26200389 50.1 182180 3637.7 14:53:21.612 INFO ProgressMeter - NC_035780.1:26251136 50.3 182600 3633.4 14:53:28.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:53:28.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:53:30.718 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:53:31.671 INFO ProgressMeter - NC_035780.1:26369490 50.4 183280 3634.8 14:53:33.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:53:41.674 INFO ProgressMeter - NC_035780.1:26420995 50.6 183690 3630.9 14:53:51.778 INFO ProgressMeter - NC_035780.1:26494500 50.8 184180 3628.6 14:53:54.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:53:54.143 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:53:54.143 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:54:00.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:54:00.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:54:02.032 INFO ProgressMeter - NC_035780.1:26587969 50.9 184800 3628.5 14:54:12.724 INFO ProgressMeter - NC_035780.1:26662136 51.1 185360 3626.9 14:54:22.788 INFO ProgressMeter - NC_035780.1:26685558 51.3 185530 3618.3 14:54:32.791 INFO ProgressMeter - NC_035780.1:26768892 51.4 186160 3618.8 14:54:34.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:54:35.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:54:35.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:54:35.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:54:35.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:54:39.002 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:54:39.002 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:54:39.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:54:42.879 INFO ProgressMeter - NC_035780.1:26886876 51.6 186830 3620.0 14:54:52.999 INFO ProgressMeter - NC_035780.1:26980396 51.8 187510 3621.4 14:55:00.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:55:03.291 INFO ProgressMeter - NC_035780.1:27084209 52.0 188280 3624.2 14:55:13.682 INFO ProgressMeter - NC_035780.1:27157016 52.1 188810 3622.4 14:55:14.328 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:55:24.123 INFO ProgressMeter - NC_035780.1:27196725 52.3 189120 3616.2 14:55:25.011 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:55:25.776 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:55:34.747 INFO ProgressMeter - NC_035780.1:27270644 52.5 189720 3615.5 14:55:45.042 INFO ProgressMeter - NC_035780.1:27328712 52.6 190140 3611.7 14:55:55.526 INFO ProgressMeter - NC_035780.1:27392771 52.8 190610 3608.6 14:55:56.071 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:56:05.941 INFO ProgressMeter - NC_035780.1:27441007 53.0 191000 3604.1 14:56:15.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:56:15.963 INFO ProgressMeter - NC_035780.1:27503904 53.2 191450 3601.3 14:56:17.407 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:56:26.189 INFO ProgressMeter - NC_035780.1:27545322 53.3 191770 3595.8 14:56:36.386 INFO ProgressMeter - NC_035780.1:27586039 53.5 192070 3590.0 14:56:47.597 INFO ProgressMeter - NC_035780.1:27639976 53.7 192470 3584.9 14:56:58.186 INFO ProgressMeter - NC_035780.1:27668590 53.9 192690 3577.3 14:57:00.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:57:08.460 INFO ProgressMeter - NC_035780.1:27716758 54.0 193060 3572.8 14:57:13.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:57:13.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:57:18.534 INFO ProgressMeter - NC_035780.1:27784798 54.2 193550 3570.7 14:57:29.126 INFO ProgressMeter - NC_035780.1:27861179 54.4 194140 3570.0 14:57:39.592 INFO ProgressMeter - NC_035780.1:27927269 54.6 194660 3568.1 14:57:49.680 INFO ProgressMeter - NC_035780.1:27992579 54.7 195160 3566.3 14:57:57.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:57:57.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:57:59.819 INFO ProgressMeter - NC_035780.1:28074874 54.9 195760 3566.2 14:58:10.417 INFO ProgressMeter - NC_035780.1:28127042 55.1 196140 3561.7 14:58:10.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:58:19.264 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:58:20.729 INFO ProgressMeter - NC_035780.1:28208152 55.2 196690 3560.6 14:58:21.134 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:58:21.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:58:23.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:58:23.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:58:30.748 INFO ProgressMeter - NC_035780.1:28290523 55.4 197380 3562.3 14:58:32.443 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:58:41.362 INFO ProgressMeter - NC_035780.1:28388947 55.6 198130 3564.5 14:58:45.705 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:58:51.571 INFO ProgressMeter - NC_035780.1:28437740 55.8 198470 3559.7 14:58:55.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:58:55.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:01.675 INFO ProgressMeter - NC_035780.1:28498613 55.9 198900 3556.6 14:59:10.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:12.164 INFO ProgressMeter - NC_035780.1:28590169 56.1 199600 3558.0 14:59:13.995 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:13.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:14.001 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:14.001 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:14.195 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:14.195 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:22.366 INFO ProgressMeter - NC_035780.1:28682235 56.3 200200 3558.0 14:59:23.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:29.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:29.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:29.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:29.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:32.583 INFO ProgressMeter - NC_035780.1:28776771 56.4 200880 3559.3 14:59:39.131 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:42.615 INFO ProgressMeter - NC_035780.1:28865597 56.6 201530 3560.2 14:59:47.296 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:48.512 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:48.735 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:51.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:51.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:52.644 INFO ProgressMeter - NC_035780.1:29083010 56.8 202950 3574.8 14:59:55.144 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:56.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:56.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:56.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:56.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:56.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:56.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:56.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:56.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:56.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:56.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:57.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 14:59:57.455 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:00:03.229 INFO ProgressMeter - NC_035780.1:29242359 56.9 204000 3582.1 15:00:13.895 INFO ProgressMeter - NC_035780.1:29309205 57.1 204510 3579.9 15:00:23.958 INFO ProgressMeter - NC_035780.1:29377903 57.3 205000 3578.0 15:00:25.682 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:00:27.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:00:32.954 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:00:33.962 INFO ProgressMeter - NC_035780.1:29468768 57.5 205640 3578.7 15:00:44.403 INFO ProgressMeter - NC_035780.1:29519171 57.6 206030 3574.7 15:00:50.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:00:54.499 INFO ProgressMeter - NC_035780.1:29610989 57.8 206690 3575.7 15:00:58.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:00:58.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:01:04.606 INFO ProgressMeter - NC_035780.1:29724105 58.0 207510 3579.5 15:01:14.884 INFO ProgressMeter - NC_035780.1:29810532 58.1 208100 3579.1 15:01:20.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:01:23.462 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:01:25.073 INFO ProgressMeter - NC_035780.1:29886281 58.3 208690 3578.8 15:01:35.494 INFO ProgressMeter - NC_035780.1:29933866 58.5 209050 3574.3 15:01:35.515 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:01:45.577 INFO ProgressMeter - NC_035780.1:29993421 58.7 209510 3571.9 15:01:47.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:01:47.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:01:50.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:01:52.064 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:01:55.820 INFO ProgressMeter - NC_035780.1:30090999 58.8 210140 3572.2 15:02:05.883 INFO ProgressMeter - NC_035780.1:30133321 59.0 210460 3567.5 15:02:08.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:02:10.738 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:02:16.493 INFO ProgressMeter - NC_035780.1:30188245 59.2 210880 3563.9 15:02:22.286 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:02:22.286 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:02:27.034 INFO ProgressMeter - NC_035780.1:30262101 59.3 211440 3562.8 15:02:37.044 INFO ProgressMeter - NC_035780.1:30299915 59.5 211750 3558.0 15:02:37.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:02:47.466 INFO ProgressMeter - NC_035780.1:30330104 59.7 211970 3551.4 15:02:58.228 INFO ProgressMeter - NC_035780.1:30362334 59.9 212210 3544.7 15:03:02.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:03:02.590 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:03:02.590 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:03:02.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:03:04.875 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:03:08.622 INFO ProgressMeter - NC_035780.1:30494052 60.0 213000 3547.7 15:03:19.140 INFO ProgressMeter - NC_035780.1:30560504 60.2 213450 3544.8 15:03:29.211 INFO ProgressMeter - NC_035780.1:30604027 60.4 213780 3540.4 15:03:32.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:03:32.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:03:39.572 INFO ProgressMeter - NC_035780.1:30669601 60.6 214270 3538.4 15:03:49.891 INFO ProgressMeter - NC_035780.1:30731831 60.7 214730 3536.0 15:03:59.799 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:03:59.799 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:03:59.976 INFO ProgressMeter - NC_035780.1:30816773 60.9 215380 3536.9 15:04:10.158 INFO ProgressMeter - NC_035780.1:30889255 61.1 215960 3536.6 15:04:20.241 INFO ProgressMeter - NC_035780.1:30943386 61.2 216370 3533.6 15:04:20.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:04:21.276 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:04:23.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:04:30.041 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:04:30.500 INFO ProgressMeter - NC_035780.1:31019026 61.4 216900 3532.3 15:04:40.836 INFO ProgressMeter - NC_035780.1:31127242 61.6 217670 3535.0 15:04:44.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:04:51.095 INFO ProgressMeter - NC_035780.1:31287647 61.7 218920 3545.4 15:04:59.887 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:05:01.352 INFO ProgressMeter - NC_035780.1:31352536 61.9 219390 3543.2 15:05:12.404 INFO ProgressMeter - NC_035780.1:31423076 62.1 219910 3541.1 15:05:22.552 INFO ProgressMeter - NC_035780.1:31503200 62.3 220420 3539.7 15:05:32.556 INFO ProgressMeter - NC_035780.1:31563320 62.4 220750 3535.5 15:05:34.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:05:42.673 INFO ProgressMeter - NC_035780.1:31746023 62.6 222320 3551.1 15:05:54.068 INFO ProgressMeter - NC_035780.1:31812004 62.8 222860 3548.9 15:06:04.315 INFO ProgressMeter - NC_035780.1:31887460 63.0 223360 3547.2 15:06:05.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:06:05.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:06:06.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:06:14.470 INFO ProgressMeter - NC_035780.1:31959486 63.1 223800 3544.7 15:06:24.521 INFO ProgressMeter - NC_035780.1:32043652 63.3 224420 3545.1 15:06:28.367 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:06:28.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:06:34.529 INFO ProgressMeter - NC_035780.1:32116136 63.5 224820 3542.1 15:06:39.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:06:39.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:06:42.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:06:42.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:06:42.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:06:44.874 INFO ProgressMeter - NC_035780.1:32161293 63.6 225160 3537.8 15:06:54.883 INFO ProgressMeter - NC_035780.1:32187077 63.8 225360 3531.7 15:06:57.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:06:57.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:07:05.249 INFO ProgressMeter - NC_035780.1:32249999 64.0 225830 3529.5 15:07:15.355 INFO ProgressMeter - NC_035780.1:32308426 64.2 226270 3527.1 15:07:25.402 INFO ProgressMeter - NC_035780.1:32347813 64.3 226550 3522.3 15:07:36.973 INFO ProgressMeter - NC_035780.1:32400678 64.5 226930 3517.7 15:07:47.094 INFO ProgressMeter - NC_035780.1:32442104 64.7 227240 3513.3 15:07:58.008 INFO ProgressMeter - NC_035780.1:32486107 64.9 227590 3508.8 15:08:08.744 INFO ProgressMeter - NC_035780.1:32511001 65.0 227760 3501.8 15:08:12.664 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:08:15.794 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:08:18.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:08:19.325 INFO ProgressMeter - NC_035780.1:32600311 65.2 228230 3499.5 15:08:19.492 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:08:29.670 INFO ProgressMeter - NC_035780.1:32623306 65.4 228400 3492.9 15:08:31.474 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:08:39.779 INFO ProgressMeter - NC_035780.1:32649242 65.6 228560 3486.3 15:08:50.494 INFO ProgressMeter - NC_035780.1:32659404 65.7 228630 3477.9 15:08:57.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:08:57.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:09:00.799 INFO ProgressMeter - NC_035780.1:32698532 65.9 228920 3473.3 15:09:04.193 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:09:11.488 INFO ProgressMeter - NC_035780.1:32742957 66.1 229210 3468.3 15:09:21.558 INFO ProgressMeter - NC_035780.1:32781303 66.3 229510 3464.0 15:09:29.058 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:09:30.256 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:09:31.626 INFO ProgressMeter - NC_035780.1:32829952 66.4 229920 3461.5 15:09:40.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:09:40.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:09:42.625 INFO ProgressMeter - NC_035780.1:32890298 66.6 230410 3459.3 15:09:52.696 INFO ProgressMeter - NC_035780.1:32922487 66.8 230650 3454.2 15:10:02.858 INFO ProgressMeter - NC_035780.1:33010221 66.9 231290 3455.0 15:10:07.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:10:08.292 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:10:13.110 INFO ProgressMeter - NC_035780.1:33141987 67.1 232190 3459.6 15:10:18.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:10:21.503 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:10:23.167 INFO ProgressMeter - NC_035780.1:33187011 67.3 232510 3455.8 15:10:23.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:10:25.341 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:10:31.863 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:10:33.241 INFO ProgressMeter - NC_035780.1:33236389 67.4 232910 3453.1 15:10:35.383 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:10:40.838 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:10:43.321 INFO ProgressMeter - NC_035780.1:33364123 67.6 233990 3460.5 15:10:53.786 INFO ProgressMeter - NC_035780.1:33466839 67.8 234790 3463.4 15:10:59.162 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:11:03.950 INFO ProgressMeter - NC_035780.1:33540623 68.0 235350 3463.0 15:11:14.027 INFO ProgressMeter - NC_035780.1:33597763 68.1 235790 3460.9 15:11:24.059 INFO ProgressMeter - NC_035780.1:33681909 68.3 236410 3461.5 15:11:25.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:11:25.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:11:25.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:11:27.586 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:11:34.232 INFO ProgressMeter - NC_035780.1:33780325 68.5 237140 3463.6 15:11:36.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:11:36.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:11:36.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:11:40.486 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:11:44.566 INFO ProgressMeter - NC_035780.1:33855510 68.6 237710 3463.2 15:11:51.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:11:54.462 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:11:54.852 INFO ProgressMeter - NC_035780.1:33925164 68.8 238190 3461.6 15:12:04.855 INFO ProgressMeter - NC_035780.1:34013892 69.0 238910 3463.6 15:12:13.458 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:12:15.539 INFO ProgressMeter - NC_035780.1:34098463 69.2 239520 3463.5 15:12:18.256 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:12:23.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:12:23.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:12:25.638 INFO ProgressMeter - NC_035780.1:34157921 69.3 239980 3461.8 15:12:27.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:12:35.897 INFO ProgressMeter - NC_035780.1:34182891 69.5 240170 3456.0 15:12:35.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:12:36.227 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:12:40.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:12:46.188 INFO ProgressMeter - NC_035780.1:34249012 69.7 240680 3454.8 15:12:52.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:12:55.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:12:57.151 INFO ProgressMeter - NC_035780.1:34310903 69.8 241080 3451.5 15:13:01.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:07.035 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:07.035 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:07.165 INFO ProgressMeter - NC_035780.1:34416623 70.0 241760 3453.0 15:13:08.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:08.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:08.374 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:08.375 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:08.375 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:08.375 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:08.998 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:09.077 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:09.078 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:09.078 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:11.487 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:17.195 INFO ProgressMeter - NC_035780.1:34489958 70.2 242230 3451.4 15:13:18.649 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:22.444 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:24.728 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:27.209 INFO ProgressMeter - NC_035780.1:34565484 70.3 242750 3450.6 15:13:32.618 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:35.574 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:37.504 INFO ProgressMeter - NC_035780.1:34639279 70.5 243340 3450.6 15:13:37.954 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:42.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:47.861 INFO ProgressMeter - NC_035780.1:34688679 70.7 243730 3447.7 15:13:51.197 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:13:58.013 INFO ProgressMeter - NC_035780.1:34745663 70.9 244140 3445.3 15:14:02.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:14:08.266 INFO ProgressMeter - NC_035780.1:34831994 71.0 244770 3445.8 15:14:15.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:14:15.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:14:18.466 INFO ProgressMeter - NC_035780.1:34887568 71.2 245200 3443.7 15:14:25.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:14:27.058 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:14:28.764 INFO ProgressMeter - NC_035780.1:34955410 71.4 245650 3441.7 15:14:38.788 INFO ProgressMeter - NC_035780.1:35009071 71.5 246030 3439.0 15:14:44.326 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:14:49.127 INFO ProgressMeter - NC_035780.1:35101982 71.7 246700 3440.0 15:14:59.145 INFO ProgressMeter - NC_035780.1:35196905 71.9 247420 3442.1 15:15:03.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:03.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:04.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:04.971 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:05.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:09.563 INFO ProgressMeter - NC_035780.1:35333791 72.1 248350 3446.7 15:15:18.908 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:18.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:19.882 INFO ProgressMeter - NC_035780.1:35400143 72.2 248870 3445.7 15:15:22.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:22.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:22.640 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:30.688 INFO ProgressMeter - NC_035780.1:35461892 72.4 249280 3442.8 15:15:38.091 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:40.814 INFO ProgressMeter - NC_035780.1:35501711 72.6 249540 3438.3 15:15:40.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:40.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:40.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:48.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:50.817 INFO ProgressMeter - NC_035780.1:35627908 72.7 250480 3443.4 15:15:54.550 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:55.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:15:57.338 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:00.408 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:01.208 INFO ProgressMeter - NC_035780.1:35813030 72.9 251910 3454.8 15:16:11.661 INFO ProgressMeter - NC_035780.1:35885301 73.1 252510 3454.8 15:16:19.536 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:21.715 INFO ProgressMeter - NC_035780.1:35935452 73.3 252920 3452.5 15:16:31.724 INFO ProgressMeter - NC_035780.1:36009691 73.4 253460 3452.0 15:16:41.842 INFO ProgressMeter - NC_035780.1:36071591 73.6 253900 3450.1 15:16:50.331 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:51.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:51.351 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:51.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:51.887 INFO ProgressMeter - NC_035780.1:36208367 73.8 254920 3456.1 15:16:52.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:52.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:52.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:52.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:52.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:52.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:52.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:52.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:52.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:52.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:52.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:52.426 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:16:59.877 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:01.442 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:01.442 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:02.407 INFO ProgressMeter - NC_035780.1:36272322 73.9 255430 3454.8 15:17:08.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:08.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:08.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:08.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:08.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:08.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:08.814 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:09.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:12.521 INFO ProgressMeter - NC_035780.1:36411435 74.1 256180 3457.0 15:17:15.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:15.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:15.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:15.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:15.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:15.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:15.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:19.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:20.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:20.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:20.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:20.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:23.751 INFO ProgressMeter - NC_035780.1:36501550 74.3 256820 3456.9 15:17:25.140 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:25.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:33.959 INFO ProgressMeter - NC_035780.1:36574312 74.5 257320 3455.7 15:17:44.122 INFO ProgressMeter - NC_035780.1:36632480 74.6 257790 3454.2 15:17:45.129 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:50.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:17:54.919 INFO ProgressMeter - NC_035780.1:36698659 74.8 258300 3452.7 15:18:04.983 INFO ProgressMeter - NC_035780.1:36745243 75.0 258640 3449.5 15:18:15.172 INFO ProgressMeter - NC_035780.1:36767599 75.1 258810 3444.0 15:18:15.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:18:24.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:18:24.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:18:24.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:18:25.186 INFO ProgressMeter - NC_035780.1:36836159 75.3 259300 3442.9 15:18:31.269 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:18:36.421 INFO ProgressMeter - NC_035780.1:37009955 75.5 260470 3449.8 15:18:39.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:18:39.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:18:39.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:18:46.505 INFO ProgressMeter - NC_035780.1:37094112 75.7 260950 3448.5 15:18:56.773 INFO ProgressMeter - NC_035780.1:37219378 75.8 261820 3452.2 15:19:06.871 INFO ProgressMeter - NC_035780.1:37448919 76.0 263250 3463.4 15:19:15.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:19:16.902 INFO ProgressMeter - NC_035780.1:37677390 76.2 264730 3475.2 15:19:24.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:19:27.157 INFO ProgressMeter - NC_035780.1:37904164 76.3 266260 3487.4 15:19:30.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:19:30.863 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:19:37.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:19:37.303 INFO ProgressMeter - NC_035780.1:37968010 76.5 266690 3485.4 15:19:45.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:19:45.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:19:47.313 INFO ProgressMeter - NC_035780.1:38005466 76.7 266970 3481.4 15:19:57.420 INFO ProgressMeter - NC_035780.1:38076189 76.9 267520 3481.0 15:19:58.971 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:20:07.434 INFO ProgressMeter - NC_035780.1:38139623 77.0 267990 3479.5 15:20:17.966 INFO ProgressMeter - NC_035780.1:38205646 77.2 268490 3478.1 15:20:24.371 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:20:24.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:20:26.610 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:20:27.977 INFO ProgressMeter - NC_035780.1:38242956 77.4 268790 3474.5 15:20:37.171 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:20:38.133 INFO ProgressMeter - NC_035780.1:38327113 77.5 269400 3474.7 15:20:40.137 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:20:46.266 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:20:48.201 INFO ProgressMeter - NC_035780.1:38454308 77.7 270330 3479.2 15:20:48.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:20:49.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:20:49.160 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:20:50.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:20:58.241 INFO ProgressMeter - NC_035780.1:38608634 77.9 271320 3484.4 15:20:58.935 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:21:07.210 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:21:07.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:21:07.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:21:08.274 INFO ProgressMeter - NC_035780.1:38723828 78.0 272090 3486.8 15:21:12.668 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:21:15.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:21:18.276 INFO ProgressMeter - NC_035780.1:38948290 78.2 273610 3498.8 15:21:27.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:21:28.332 INFO ProgressMeter - NC_035780.1:39179247 78.4 275170 3511.3 15:21:32.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:21:39.271 INFO ProgressMeter - NC_035780.1:39327125 78.6 276210 3516.4 15:21:40.519 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:21:49.359 INFO ProgressMeter - NC_035780.1:39397056 78.7 276760 3515.8 15:21:59.495 INFO ProgressMeter - NC_035780.1:39455535 78.9 277170 3513.5 15:22:09.815 INFO ProgressMeter - NC_035780.1:39484392 79.1 277400 3508.8 15:22:19.875 INFO ProgressMeter - NC_035780.1:39533613 79.2 277770 3506.0 15:22:28.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:22:29.982 INFO ProgressMeter - NC_035780.1:39588910 79.4 278140 3503.2 15:22:32.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:22:32.345 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:22:40.083 INFO ProgressMeter - NC_035780.1:39644592 79.6 278540 3500.8 15:22:49.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:22:50.219 INFO ProgressMeter - NC_035780.1:39738455 79.7 279220 3502.0 15:22:53.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:22:53.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:22:54.819 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:23:00.225 INFO ProgressMeter - NC_035780.1:39801252 79.9 279700 3500.7 15:23:10.442 INFO ProgressMeter - NC_035780.1:39882413 80.1 280380 3501.7 15:23:20.469 INFO ProgressMeter - NC_035780.1:39951531 80.2 280920 3501.1 15:23:21.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:23:22.837 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:23:23.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:23:23.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:23:23.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:23:30.539 INFO ProgressMeter - NC_035780.1:40037993 80.4 281610 3502.4 15:23:38.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:23:40.580 INFO ProgressMeter - NC_035780.1:40097834 80.6 282100 3501.2 15:23:50.720 INFO ProgressMeter - NC_035780.1:40164129 80.7 282640 3500.6 15:23:56.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:24:00.872 INFO ProgressMeter - NC_035780.1:40307570 80.9 283570 3504.8 15:24:05.311 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:24:05.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:24:11.257 INFO ProgressMeter - NC_035780.1:40458733 81.1 284770 3512.1 15:24:19.907 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:24:21.393 INFO ProgressMeter - NC_035780.1:40575238 81.3 285710 3516.3 15:24:31.843 INFO ProgressMeter - NC_035780.1:40704783 81.4 286690 3520.9 15:24:38.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:24:42.230 INFO ProgressMeter - NC_035780.1:40873772 81.6 288110 3530.8 15:24:48.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:24:50.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:24:51.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:24:52.382 INFO ProgressMeter - NC_035780.1:41017682 81.8 289280 3537.8 15:24:53.152 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:24:58.243 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:25:00.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:25:02.709 INFO ProgressMeter - NC_035780.1:41192151 81.9 290660 3547.2 15:25:03.905 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:25:03.905 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:25:03.998 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:25:07.467 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:25:07.467 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:25:12.712 INFO ProgressMeter - NC_035780.1:41326476 82.1 291770 3553.5 15:25:22.784 INFO ProgressMeter - NC_035780.1:41456741 82.3 292840 3559.3 15:25:27.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:25:27.744 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:25:32.887 INFO ProgressMeter - NC_035780.1:41538771 82.4 293500 3560.0 15:25:38.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:25:42.804 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:25:42.953 INFO ProgressMeter - NC_035780.1:41692617 82.6 294720 3567.5 15:25:53.240 INFO ProgressMeter - NC_035780.1:41795200 82.8 295550 3570.2 15:26:00.541 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:26:03.456 INFO ProgressMeter - NC_035780.1:41907354 83.0 296480 3574.1 15:26:03.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:26:13.615 INFO ProgressMeter - NC_035780.1:41995204 83.1 297140 3574.7 15:26:23.912 INFO ProgressMeter - NC_035780.1:42093139 83.3 297910 3576.6 15:26:28.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:26:33.972 INFO ProgressMeter - NC_035780.1:42198198 83.5 298740 3579.4 15:26:34.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:26:36.016 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:26:36.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:26:37.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:26:38.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:26:38.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:26:44.281 INFO ProgressMeter - NC_035780.1:42406497 83.6 300400 3591.9 15:26:48.242 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:26:55.126 INFO ProgressMeter - NC_035780.1:42465696 83.8 300880 3589.8 15:26:55.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:27:05.301 INFO ProgressMeter - NC_035780.1:42537663 84.0 301500 3590.0 15:27:06.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:27:15.351 INFO ProgressMeter - NC_035780.1:42591804 84.2 301900 3587.6 15:27:25.384 INFO ProgressMeter - NC_035780.1:42631962 84.3 302220 3584.3 15:27:35.521 INFO ProgressMeter - NC_035780.1:42687911 84.5 302680 3582.5 15:27:43.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:27:45.678 INFO ProgressMeter - NC_035780.1:42760151 84.7 303260 3582.2 15:27:55.736 INFO ProgressMeter - NC_035780.1:42844316 84.8 303920 3582.9 15:28:04.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:28:05.740 INFO ProgressMeter - NC_035780.1:42893789 85.0 304290 3580.3 15:28:07.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:28:14.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:28:16.032 INFO ProgressMeter - NC_035780.1:42944767 85.2 304720 3578.1 15:28:26.096 INFO ProgressMeter - NC_035780.1:42986078 85.3 305040 3574.8 15:28:29.477 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:28:30.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:28:36.164 INFO ProgressMeter - NC_035780.1:43035842 85.5 305380 3571.8 15:28:46.314 INFO ProgressMeter - NC_035780.1:43082412 85.7 305760 3569.1 15:28:54.574 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:28:56.982 INFO ProgressMeter - NC_035780.1:43140535 85.8 306240 3567.3 15:29:07.086 INFO ProgressMeter - NC_035780.1:43183634 86.0 306570 3564.2 15:29:17.512 INFO ProgressMeter - NC_035780.1:43315861 86.2 307450 3567.2 15:29:27.530 INFO ProgressMeter - NC_035780.1:43485745 86.4 308600 3573.6 15:29:28.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:29:30.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:29:33.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:29:34.154 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:29:37.664 INFO ProgressMeter - NC_035780.1:43717712 86.5 310200 3585.2 15:29:45.460 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:29:46.367 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:29:46.558 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:29:47.731 INFO ProgressMeter - NC_035780.1:43978940 86.7 311910 3597.9 15:29:57.823 INFO ProgressMeter - NC_035780.1:44198107 86.9 313360 3607.7 15:30:03.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:30:07.870 INFO ProgressMeter - NC_035780.1:44236343 87.0 313650 3604.1 15:30:18.016 INFO ProgressMeter - NC_035780.1:44346056 87.2 314490 3606.7 15:30:27.345 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:30:28.684 INFO ProgressMeter - NC_035780.1:44453909 87.4 315190 3607.4 15:30:30.213 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:30:31.209 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:30:31.210 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:30:36.172 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:30:36.184 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:30:38.875 INFO ProgressMeter - NC_035780.1:44651958 87.5 316620 3616.7 15:30:39.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:30:39.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:30:39.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:30:44.950 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:30:46.115 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:30:48.921 INFO ProgressMeter - NC_035780.1:44864631 87.7 318020 3625.8 15:30:58.986 INFO ProgressMeter - NC_035780.1:44967445 87.9 318820 3628.0 15:31:00.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:31:00.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:31:08.354 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:31:09.078 INFO ProgressMeter - NC_035780.1:45012696 88.0 319190 3625.2 15:31:19.220 INFO ProgressMeter - NC_035780.1:45128981 88.2 319970 3627.1 15:31:20.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:31:23.729 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:31:23.948 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:31:23.948 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:31:29.251 INFO ProgressMeter - NC_035780.1:45409213 88.4 321720 3640.1 15:31:37.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:31:39.267 INFO ProgressMeter - NC_035780.1:45671624 88.6 323310 3651.2 15:31:39.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:31:48.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:31:49.353 INFO ProgressMeter - NC_035780.1:45949495 88.7 324980 3663.1 15:32:00.239 INFO ProgressMeter - NC_035780.1:46132116 88.9 326450 3672.1 15:32:10.270 INFO ProgressMeter - NC_035780.1:46238956 89.1 327180 3673.4 15:32:20.311 INFO ProgressMeter - NC_035780.1:46475596 89.2 328600 3682.4 15:32:30.324 INFO ProgressMeter - NC_035780.1:46654924 89.4 329830 3689.3 15:32:35.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:32:35.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:32:40.343 INFO ProgressMeter - NC_035780.1:46835893 89.6 331050 3696.1 15:32:50.880 INFO ProgressMeter - NC_035780.1:46898046 89.7 331500 3693.9 15:32:51.267 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:32:51.267 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:32:58.050 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:33:01.172 INFO ProgressMeter - NC_035780.1:46963053 89.9 332010 3692.5 15:33:11.342 INFO ProgressMeter - NC_035780.1:47049164 90.1 332610 3692.2 15:33:21.891 INFO ProgressMeter - NC_035780.1:47095846 90.3 332950 3688.8 15:33:29.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:33:29.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:33:32.279 INFO ProgressMeter - NC_035780.1:47150177 90.4 333400 3686.7 15:33:35.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:33:42.362 INFO ProgressMeter - NC_035780.1:47215737 90.6 333900 3685.4 15:33:49.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:33:52.639 INFO ProgressMeter - NC_035780.1:47288968 90.8 334400 3683.9 15:34:02.891 INFO ProgressMeter - NC_035780.1:47325211 90.9 334670 3680.0 15:34:05.109 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:34:05.269 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:34:05.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:34:13.066 INFO ProgressMeter - NC_035780.1:47387390 91.1 335090 3677.7 15:34:23.321 INFO ProgressMeter - NC_035780.1:47472008 91.3 335700 3677.5 15:34:25.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:34:33.399 INFO ProgressMeter - NC_035780.1:47658233 91.5 337000 3685.0 15:34:43.774 INFO ProgressMeter - NC_035780.1:47818592 91.6 338030 3689.3 15:34:44.220 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:34:44.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:34:52.553 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:34:53.304 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:34:53.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:34:53.848 INFO ProgressMeter - NC_035780.1:48047303 91.8 339510 3698.6 15:34:55.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:34:59.016 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:02.182 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:04.013 INFO ProgressMeter - NC_035780.1:48172415 92.0 340360 3701.1 15:35:11.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:14.208 INFO ProgressMeter - NC_035780.1:48333263 92.1 341480 3706.4 15:35:18.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:18.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:24.352 INFO ProgressMeter - NC_035780.1:48571613 92.3 343040 3716.5 15:35:27.798 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:32.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:32.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:34.556 INFO ProgressMeter - NC_035780.1:48685687 92.5 343800 3717.9 15:35:35.290 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:35.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:37.208 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:37.208 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:37.266 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:37.266 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:39.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:40.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:40.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:43.256 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:43.256 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:43.256 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:44.561 INFO ProgressMeter - NC_035780.1:49150717 92.6 345950 3734.4 15:35:47.440 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:49.325 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:55.948 INFO ProgressMeter - NC_035780.1:49219150 92.8 346330 3730.9 15:35:58.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:35:58.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:36:00.426 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:36:06.034 INFO ProgressMeter - NC_035780.1:49411938 93.0 347520 3736.9 15:36:08.190 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:36:08.190 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:36:12.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:36:16.287 INFO ProgressMeter - NC_035780.1:49598141 93.2 348760 3743.4 15:36:16.787 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:36:25.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:36:26.788 INFO ProgressMeter - NC_035780.1:49770630 93.3 349890 3748.5 15:36:36.921 INFO ProgressMeter - NC_035780.1:49910025 93.5 350800 3751.4 15:36:39.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:36:47.077 INFO ProgressMeter - NC_035780.1:50098389 93.7 352050 3758.0 15:36:49.613 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:36:57.362 INFO ProgressMeter - NC_035780.1:50233098 93.9 352970 3760.9 15:37:07.505 INFO ProgressMeter - NC_035780.1:50408025 94.0 354190 3767.2 15:37:08.080 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:10.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:14.054 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:17.520 INFO ProgressMeter - NC_035780.1:50838415 94.2 356270 3782.6 15:37:23.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:23.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:23.329 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:27.693 INFO ProgressMeter - NC_035780.1:50933350 94.4 356770 3781.1 15:37:28.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:28.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:28.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:28.553 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:33.773 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:35.914 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:38.803 INFO ProgressMeter - NC_035780.1:51105321 94.5 357950 3786.1 15:37:47.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:48.869 INFO ProgressMeter - NC_035780.1:51296546 94.7 359370 3794.4 15:37:51.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:51.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:55.755 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:56.395 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:37:59.117 INFO ProgressMeter - NC_035780.1:51424993 94.9 360260 3797.0 15:38:00.916 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:01.081 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:02.401 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:02.402 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:09.141 INFO ProgressMeter - NC_035780.1:51626922 95.0 361550 3803.9 15:38:09.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:09.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:09.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:09.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:15.586 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:15.586 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:17.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:19.419 INFO ProgressMeter - NC_035780.1:51890913 95.2 363230 3814.7 15:38:29.429 INFO ProgressMeter - NC_035780.1:52175096 95.4 365000 3826.6 15:38:34.261 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:39.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:39.434 INFO ProgressMeter - NC_035780.1:52370589 95.6 366270 3833.2 15:38:39.469 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:39.469 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:39.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:39.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:39.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:39.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:39.997 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:44.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:45.537 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:46.648 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:49.456 INFO ProgressMeter - NC_035780.1:52578911 95.7 367610 3840.5 15:38:50.199 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:51.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:54.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:54.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:54.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:38:59.608 INFO ProgressMeter - NC_035780.1:52834581 95.9 369260 3850.9 15:39:06.426 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:06.426 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:06.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:06.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:06.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:06.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:10.041 INFO ProgressMeter - NC_035780.1:53038295 96.1 370660 3858.5 15:39:14.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:20.361 INFO ProgressMeter - NC_035780.1:53227492 96.2 371910 3864.6 15:39:30.380 INFO ProgressMeter - NC_035780.1:53498782 96.4 373660 3876.1 15:39:32.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:32.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:32.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:34.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:34.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:37.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:39:40.385 INFO ProgressMeter - NC_035780.1:53778076 96.6 375420 3887.6 15:39:50.780 INFO ProgressMeter - NC_035780.1:53874924 96.7 376170 3888.4 15:40:00.896 INFO ProgressMeter - NC_035780.1:53916226 96.9 376500 3885.0 15:40:02.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:40:10.585 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:40:10.585 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:40:11.139 INFO ProgressMeter - NC_035780.1:53981893 97.1 376990 3883.2 15:40:16.232 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:40:21.485 INFO ProgressMeter - NC_035780.1:54044780 97.3 377470 3881.3 15:40:23.990 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:40:31.545 INFO ProgressMeter - NC_035780.1:54090166 97.4 377840 3878.4 15:40:41.594 INFO ProgressMeter - NC_035780.1:54140807 97.6 378220 3875.6 15:40:46.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:40:51.966 INFO ProgressMeter - NC_035780.1:54202478 97.8 378650 3873.2 15:40:54.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:41:02.098 INFO ProgressMeter - NC_035780.1:54270438 97.9 379180 3871.9 15:41:05.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:41:12.911 INFO ProgressMeter - NC_035780.1:54344641 98.1 379760 3870.7 15:41:15.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:41:15.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:41:19.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:41:23.751 INFO ProgressMeter - NC_035780.1:54397199 98.3 380110 3867.2 15:41:33.791 INFO ProgressMeter - NC_035780.1:54465734 98.5 380650 3866.1 15:41:43.828 INFO ProgressMeter - NC_035780.1:54507725 98.6 380950 3862.6 15:41:49.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:41:49.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:41:54.077 INFO ProgressMeter - NC_035780.1:54559360 98.8 381290 3859.3 15:41:59.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:42:03.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:42:03.215 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:42:04.252 INFO ProgressMeter - NC_035780.1:54619678 99.0 381760 3857.5 15:42:05.469 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:42:14.323 INFO ProgressMeter - NC_035780.1:54668787 99.1 382150 3854.9 15:42:24.515 INFO ProgressMeter - NC_035780.1:54719927 99.3 382560 3852.4 15:42:34.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:42:34.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:42:34.612 INFO ProgressMeter - NC_035780.1:54762403 99.5 382880 3849.1 15:42:40.485 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:42:40.485 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:42:41.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:42:42.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:42:44.680 INFO ProgressMeter - NC_035780.1:54828757 99.6 383380 3847.6 15:42:54.791 INFO ProgressMeter - NC_035780.1:54873253 99.8 383690 3844.3 15:43:04.820 INFO ProgressMeter - NC_035780.1:54981097 100.0 384490 3845.8 15:43:06.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:43:14.886 INFO ProgressMeter - NC_035780.1:55040988 100.1 384950 3844.0 15:43:15.263 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:43:25.317 INFO ProgressMeter - NC_035780.1:55132354 100.3 385690 3844.7 15:43:32.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:43:32.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:43:35.503 INFO ProgressMeter - NC_035780.1:55195743 100.5 386190 3843.2 15:43:46.305 INFO ProgressMeter - NC_035780.1:55273910 100.7 386730 3841.7 15:43:57.277 INFO ProgressMeter - NC_035780.1:55331699 100.9 387090 3838.3 15:44:07.313 INFO ProgressMeter - NC_035780.1:55387133 101.0 387520 3836.2 15:44:17.328 INFO ProgressMeter - NC_035780.1:55468952 101.2 388170 3836.3 15:44:27.586 INFO ProgressMeter - NC_035780.1:55526153 101.4 388620 3834.2 15:44:27.888 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:44:37.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:44:37.681 INFO ProgressMeter - NC_035780.1:55606164 101.5 389170 3833.3 15:44:39.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:44:47.820 INFO ProgressMeter - NC_035780.1:55666657 101.7 389590 3831.1 15:44:58.310 INFO ProgressMeter - NC_035780.1:55705837 101.9 389900 3827.5 15:45:06.820 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:06.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:06.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:08.540 INFO ProgressMeter - NC_035780.1:55757761 102.0 390260 3824.7 15:45:17.662 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:18.605 INFO ProgressMeter - NC_035780.1:55800013 102.2 390600 3821.7 15:45:28.781 INFO ProgressMeter - NC_035780.1:55845230 102.4 390930 3818.6 15:45:31.337 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:34.419 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:35.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:37.268 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:37.268 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:38.783 INFO ProgressMeter - NC_035780.1:56010737 102.5 392120 3824.0 15:45:42.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:42.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:42.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:42.903 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:48.960 INFO ProgressMeter - NC_035780.1:56091508 102.7 392760 3823.9 15:45:49.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:45:59.684 INFO ProgressMeter - NC_035780.1:56177675 102.9 393420 3823.7 15:46:06.481 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:09.872 INFO ProgressMeter - NC_035780.1:56235008 103.1 393840 3821.5 15:46:19.902 INFO ProgressMeter - NC_035780.1:56292299 103.2 394300 3819.7 15:46:20.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:20.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:20.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:20.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:20.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:20.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:20.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:22.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:22.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:27.431 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:27.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:27.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:30.299 INFO ProgressMeter - NC_035780.1:56501022 103.4 395810 3827.9 15:46:32.948 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:32.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:37.167 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:40.677 INFO ProgressMeter - NC_035780.1:56649190 103.6 396940 3832.4 15:46:43.130 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:46:51.188 INFO ProgressMeter - NC_035780.1:56765465 103.7 397870 3834.9 15:47:00.696 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:47:02.010 INFO ProgressMeter - NC_035780.1:56829273 103.9 398330 3832.7 15:47:11.679 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:47:12.340 INFO ProgressMeter - NC_035780.1:56888716 104.1 398800 3830.9 15:47:22.398 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:47:22.677 INFO ProgressMeter - NC_035780.1:56941222 104.3 399180 3828.2 15:47:24.477 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:47:32.985 INFO ProgressMeter - NC_035780.1:56992849 104.4 399570 3825.6 15:47:34.643 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:47:43.314 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:47:43.315 INFO ProgressMeter - NC_035780.1:57054250 104.6 400060 3824.0 15:47:45.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:47:46.455 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:47:53.382 INFO ProgressMeter - NC_035780.1:57119459 104.8 400450 3821.6 15:47:53.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:47:55.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:47:55.743 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:48:03.925 INFO ProgressMeter - NC_035780.1:57170549 105.0 400860 3819.1 15:48:14.010 INFO ProgressMeter - NC_035780.1:57225992 105.1 401280 3817.0 15:48:19.025 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:48:24.050 INFO ProgressMeter - NC_035780.1:57287535 105.3 401770 3815.6 15:48:34.338 INFO ProgressMeter - NC_035780.1:57337285 105.5 402160 3813.1 15:48:38.469 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:48:44.584 INFO ProgressMeter - NC_035780.1:57462981 105.6 403180 3816.6 15:48:48.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:48:50.631 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:48:53.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:48:54.632 INFO ProgressMeter - NC_035780.1:57689395 105.8 404750 3825.4 15:49:02.447 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:49:04.669 INFO ProgressMeter - NC_035780.1:57804473 106.0 405610 3827.5 15:49:15.120 INFO ProgressMeter - NC_035780.1:57866102 106.1 406110 3825.9 15:49:25.154 INFO ProgressMeter - NC_035780.1:57944798 106.3 406760 3826.0 15:49:32.011 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:49:35.201 INFO ProgressMeter - NC_035780.1:58000457 106.5 407170 3823.8 15:49:36.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:49:40.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:49:40.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:49:45.600 INFO ProgressMeter - NC_035780.1:58116023 106.7 408100 3826.3 15:49:55.634 INFO ProgressMeter - NC_035780.1:58182951 106.8 408620 3825.2 15:50:00.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:50:05.701 INFO ProgressMeter - NC_035780.1:58318183 107.0 409760 3829.9 15:50:16.008 INFO ProgressMeter - NC_035780.1:58407309 107.2 410470 3830.4 15:50:26.263 INFO ProgressMeter - NC_035780.1:58467444 107.3 410950 3828.7 15:50:27.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:50:36.612 INFO ProgressMeter - NC_035780.1:58536926 107.5 411510 3827.8 15:50:47.854 INFO ProgressMeter - NC_035780.1:58592183 107.7 411860 3824.4 15:50:57.856 INFO ProgressMeter - NC_035780.1:58644994 107.9 412260 3822.2 15:51:07.894 INFO ProgressMeter - NC_035780.1:58735534 108.0 412890 3822.1 15:51:11.316 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:51:11.318 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:51:11.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:51:18.976 INFO ProgressMeter - NC_035780.1:58833275 108.2 413700 3823.1 15:51:28.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:51:29.457 INFO ProgressMeter - NC_035780.1:58864934 108.4 413930 3819.0 15:51:40.221 INFO ProgressMeter - NC_035780.1:58910117 108.6 414270 3815.8 15:51:50.536 INFO ProgressMeter - NC_035780.1:58970206 108.7 414760 3814.3 15:51:54.167 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:52:00.556 INFO ProgressMeter - NC_035780.1:59034597 108.9 415280 3813.2 15:52:10.689 INFO ProgressMeter - NC_035780.1:59089177 109.1 415700 3811.2 15:52:21.146 INFO ProgressMeter - NC_035780.1:59139049 109.2 416110 3808.9 15:52:30.550 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:52:31.633 INFO ProgressMeter - NC_035780.1:59194436 109.4 416550 3806.8 15:52:35.255 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:52:37.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:52:42.075 INFO ProgressMeter - NC_035780.1:59248339 109.6 416960 3804.5 15:52:49.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:52:52.086 INFO ProgressMeter - NC_035780.1:59320869 109.8 417490 3803.5 15:53:00.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:53:03.605 INFO ProgressMeter - NC_035780.1:59380786 110.0 417980 3801.4 15:53:13.288 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:53:13.623 INFO ProgressMeter - NC_035780.1:59435548 110.1 418370 3799.1 15:53:18.467 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:53:23.798 INFO ProgressMeter - NC_035780.1:59529144 110.3 419000 3799.0 15:53:23.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:53:23.914 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:53:23.914 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:53:24.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:53:34.973 INFO ProgressMeter - NC_035780.1:59615841 110.5 419660 3798.6 15:53:39.846 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:53:45.490 INFO ProgressMeter - NC_035780.1:59686831 110.7 420220 3797.6 15:53:49.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:53:49.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:53:56.226 INFO ProgressMeter - NC_035780.1:59728625 110.8 420530 3794.3 15:54:04.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:54:06.278 INFO ProgressMeter - NC_035780.1:59794908 111.0 421050 3793.2 15:54:16.472 INFO ProgressMeter - NC_035780.1:59849799 111.2 421480 3791.3 15:54:18.127 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:54:25.054 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:54:26.899 INFO ProgressMeter - NC_035780.1:59973531 111.3 422460 3794.2 15:54:37.093 INFO ProgressMeter - NC_035780.1:60023547 111.5 422850 3791.9 15:54:47.121 INFO ProgressMeter - NC_035780.1:60064220 111.7 423190 3789.3 15:54:57.576 INFO ProgressMeter - NC_035780.1:60152430 111.9 423860 3789.4 15:55:07.960 INFO ProgressMeter - NC_035780.1:60198066 112.0 424220 3786.7 15:55:08.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:55:17.503 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:55:17.504 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:55:18.299 INFO ProgressMeter - NC_035780.1:60280264 112.2 424890 3786.9 15:55:28.583 INFO ProgressMeter - NC_035780.1:60336310 112.4 425320 3784.9 15:55:38.840 INFO ProgressMeter - NC_035780.1:60399383 112.5 425840 3783.8 15:55:40.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:55:40.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:55:40.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:55:44.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:55:48.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:55:48.983 INFO ProgressMeter - NC_035780.1:60468816 112.7 426400 3783.1 15:55:56.265 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:55:59.101 INFO ProgressMeter - NC_035780.1:60545260 112.9 427010 3782.8 15:56:06.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:56:06.178 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:56:09.134 INFO ProgressMeter - NC_035780.1:60603304 113.0 427430 3781.0 15:56:19.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:56:19.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:56:19.915 INFO ProgressMeter - NC_035780.1:60712954 113.2 428090 3780.8 15:56:20.412 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:56:30.471 INFO ProgressMeter - NC_035780.1:60766058 113.4 428510 3778.6 15:56:40.775 INFO ProgressMeter - NC_035780.1:60804775 113.6 428790 3775.4 15:56:51.750 INFO ProgressMeter - NC_035780.1:60839611 113.8 429070 3771.8 15:56:54.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:56:56.922 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:01.803 INFO ProgressMeter - NC_035780.1:60908157 113.9 429560 3770.5 15:57:12.412 INFO ProgressMeter - NC_035780.1:60959883 114.1 429940 3768.0 15:57:22.798 INFO ProgressMeter - NC_035780.1:61033617 114.3 430530 3767.5 15:57:30.598 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:33.091 INFO ProgressMeter - NC_035780.1:61074042 114.4 430860 3764.7 15:57:42.544 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:43.237 INFO ProgressMeter - NC_035780.1:61159829 114.6 431550 3765.2 15:57:52.947 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:52.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:53.830 INFO ProgressMeter - NC_035780.1:61233499 114.8 432140 3764.5 15:57:58.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:57:58.033 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:58:03.876 INFO ProgressMeter - NC_035780.1:61329365 115.0 432770 3764.5 15:58:09.530 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:58:12.419 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:58:12.419 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:58:13.883 INFO ProgressMeter - NC_035780.1:61362547 115.1 433020 3761.2 15:58:23.906 INFO ProgressMeter - NC_035780.1:61406665 115.3 433350 3758.7 15:58:34.262 INFO ProgressMeter - NC_035780.1:61470078 115.5 433830 3757.2 15:58:38.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:58:44.740 INFO ProgressMeter - NC_035780.1:61598807 115.6 434780 3759.7 15:58:46.210 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:58:48.903 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:58:55.345 INFO ProgressMeter - NC_035780.1:61695524 115.8 435220 3757.8 15:58:57.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:58:57.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:05.412 INFO ProgressMeter - NC_035780.1:61746260 116.0 435640 3756.0 15:59:10.239 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:15.139 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:15.517 INFO ProgressMeter - NC_035780.1:61950132 116.2 437060 3762.8 15:59:15.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:25.843 INFO ProgressMeter - NC_035780.1:62095786 116.3 438120 3766.3 15:59:33.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:33.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:33.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:34.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:35.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:35.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:36.003 INFO ProgressMeter - NC_035780.1:62304945 116.5 439360 3771.5 15:59:40.785 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:41.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:41.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:41.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 15:59:46.110 INFO ProgressMeter - NC_035780.1:62424010 116.7 440270 3773.8 15:59:56.619 INFO ProgressMeter - NC_035780.1:62459568 116.8 440530 3770.4 16:00:02.522 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:00:07.082 INFO ProgressMeter - NC_035780.1:62534257 117.0 441040 3769.1 16:00:17.517 INFO ProgressMeter - NC_035780.1:62600412 117.2 441560 3768.0 16:00:18.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:00:27.681 INFO ProgressMeter - NC_035780.1:62671855 117.4 442120 3767.3 16:00:33.714 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:00:35.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:00:37.850 INFO ProgressMeter - NC_035780.1:62731775 117.5 442600 3766.0 16:00:48.582 INFO ProgressMeter - NC_035780.1:62768334 117.7 442900 3762.8 16:00:58.778 INFO ProgressMeter - NC_035780.1:62820497 117.9 443330 3761.0 16:01:09.011 INFO ProgressMeter - NC_035780.1:62871508 118.0 443700 3758.7 16:01:19.197 INFO ProgressMeter - NC_035780.1:62936854 118.2 444200 3757.5 16:01:19.259 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:01:19.259 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:01:19.259 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:01:19.259 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:01:28.212 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:01:29.216 INFO ProgressMeter - NC_035780.1:62993812 118.4 444600 3755.6 16:01:35.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:01:35.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:01:39.257 INFO ProgressMeter - NC_035780.1:63054150 118.5 445090 3754.5 16:01:49.272 INFO ProgressMeter - NC_035780.1:63076949 118.7 445270 3750.7 16:01:59.567 INFO ProgressMeter - NC_035780.1:63103088 118.9 445470 3747.0 16:02:06.297 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:02:07.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:02:07.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:02:07.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:02:10.040 INFO ProgressMeter - NC_035780.1:63156692 119.1 445830 3744.5 16:02:20.991 INFO ProgressMeter - NC_035780.1:63205254 119.2 446180 3741.7 16:02:31.823 INFO ProgressMeter - NC_035780.1:63251203 119.4 446500 3738.7 16:02:40.516 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:02:42.109 INFO ProgressMeter - NC_035780.1:63310394 119.6 446920 3736.9 16:02:45.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:02:52.149 INFO ProgressMeter - NC_035780.1:63373361 119.8 447350 3735.2 16:03:02.551 INFO ProgressMeter - NC_035780.1:63407198 119.9 447620 3732.1 16:03:12.574 INFO ProgressMeter - NC_035780.1:63451026 120.1 447970 3729.8 16:03:21.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:03:23.125 INFO ProgressMeter - NC_035780.1:63499741 120.3 448320 3727.3 16:03:31.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:03:33.692 INFO ProgressMeter - NC_035780.1:63550959 120.5 448730 3725.2 16:03:43.934 INFO ProgressMeter - NC_035780.1:63605240 120.6 449160 3723.5 16:03:54.052 INFO ProgressMeter - NC_035780.1:63668330 120.8 449690 3722.7 16:04:04.332 INFO ProgressMeter - NC_035780.1:63713711 121.0 450040 3720.3 16:04:11.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:04:14.734 INFO ProgressMeter - NC_035780.1:63790010 121.1 450590 3719.5 16:04:16.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:04:16.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:04:24.745 INFO ProgressMeter - NC_035780.1:63870636 121.3 451210 3719.5 16:04:34.811 INFO ProgressMeter - NC_035780.1:63930530 121.5 451690 3718.4 16:04:44.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:04:44.136 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:04:45.497 INFO ProgressMeter - NC_035780.1:64058188 121.7 452410 3718.8 16:04:50.330 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:04:55.502 INFO ProgressMeter - NC_035780.1:64289935 121.8 453950 3726.4 16:05:00.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:00.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:00.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:05.842 INFO ProgressMeter - NC_035780.1:64479668 122.0 455190 3731.3 16:05:07.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:15.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:15.160 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:15.914 INFO ProgressMeter - NC_035780.1:64734777 122.2 456980 3740.8 16:05:25.956 INFO ProgressMeter - NC_035780.1:64982086 122.3 458340 3746.8 16:05:26.085 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:26.131 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:31.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:31.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:36.693 INFO ProgressMeter - NC_035780.1:65144402 122.5 459210 3748.4 16:05:39.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:40.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:45.595 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:45.595 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:46.125 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:46.822 INFO ProgressMeter - NC_035780.1:65239118 122.7 459890 3748.8 16:05:50.038 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:56.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:05:57.407 INFO ProgressMeter - NC_035780.1:65491347 122.9 461430 3756.0 16:06:07.671 INFO ProgressMeter - NC_035780.1:65624379 123.0 462350 3758.2 16:06:17.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:06:17.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:06:17.755 INFO ProgressMeter - NC_035781.1:83623 123.2 463310 3760.9 16:06:19.315 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:06:22.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:06:26.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:06:27.952 INFO ProgressMeter - NC_035781.1:154649 123.4 463710 3759.0 16:06:33.480 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:06:37.956 INFO ProgressMeter - NC_035781.1:250763 123.5 464420 3759.6 16:06:43.338 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:06:43.339 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:06:43.339 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:06:47.976 INFO ProgressMeter - NC_035781.1:407816 123.7 465600 3764.1 16:06:58.841 INFO ProgressMeter - NC_035781.1:485724 123.9 466190 3763.4 16:07:06.811 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:07:06.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:07:08.072 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:07:09.199 INFO ProgressMeter - NC_035781.1:519591 124.0 466450 3760.2 16:07:19.378 INFO ProgressMeter - NC_035781.1:572164 124.2 466850 3758.3 16:07:29.388 INFO ProgressMeter - NC_035781.1:631121 124.4 467320 3757.0 16:07:30.042 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:07:39.660 INFO ProgressMeter - NC_035781.1:694404 124.6 467820 3755.9 16:07:50.051 INFO ProgressMeter - NC_035781.1:747624 124.7 468230 3754.0 16:08:00.131 INFO ProgressMeter - NC_035781.1:815970 124.9 468760 3753.1 16:08:10.712 INFO ProgressMeter - NC_035781.1:901831 125.1 469440 3753.3 16:08:14.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:16.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:16.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:16.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:16.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:16.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:16.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:16.706 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:16.706 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:16.707 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:16.707 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:16.707 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:20.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:21.348 INFO ProgressMeter - NC_035781.1:991941 125.3 469970 3752.2 16:08:26.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:26.903 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:31.722 INFO ProgressMeter - NC_035781.1:1071958 125.4 470450 3750.9 16:08:38.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:39.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:39.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:39.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:39.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:39.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:39.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:39.512 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:39.512 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:42.465 INFO ProgressMeter - NC_035781.1:1126945 125.6 470850 3748.7 16:08:47.064 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:08:52.474 INFO ProgressMeter - NC_035781.1:1173931 125.8 471200 3746.5 16:08:58.196 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:00.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:00.514 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:02.931 INFO ProgressMeter - NC_035781.1:1245089 125.9 471650 3744.9 16:09:13.115 INFO ProgressMeter - NC_035781.1:1365812 126.1 472420 3746.0 16:09:23.393 INFO ProgressMeter - NC_035781.1:1584287 126.3 473850 3752.2 16:09:28.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:32.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:33.454 INFO ProgressMeter - NC_035781.1:1714763 126.5 474830 3755.0 16:09:36.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:37.831 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:38.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:40.706 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:40.706 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:40.707 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:42.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:43.765 INFO ProgressMeter - NC_035781.1:1873876 126.6 475900 3758.3 16:09:44.967 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:52.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:53.767 INFO ProgressMeter - NC_035781.1:2038728 126.8 476980 3761.9 16:09:55.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:55.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:57.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:57.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:09:58.017 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:10:03.799 INFO ProgressMeter - NC_035781.1:2171698 127.0 477910 3764.3 16:10:04.012 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:10:08.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:10:11.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:10:12.811 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:10:14.074 INFO ProgressMeter - NC_035781.1:2272386 127.1 478640 3765.0 16:10:24.345 INFO ProgressMeter - NC_035781.1:2327358 127.3 479040 3763.0 16:10:27.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:10:34.892 INFO ProgressMeter - NC_035781.1:2372614 127.5 479390 3760.6 16:10:45.037 INFO ProgressMeter - NC_035781.1:2429437 127.6 479810 3758.9 16:10:55.511 INFO ProgressMeter - NC_035781.1:2489100 127.8 480280 3757.4 16:11:03.006 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:11:06.106 INFO ProgressMeter - NC_035781.1:2533044 128.0 480610 3754.8 16:11:06.297 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:11:09.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:11:16.659 INFO ProgressMeter - NC_035781.1:2599777 128.2 481080 3753.4 16:11:22.292 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:11:27.130 INFO ProgressMeter - NC_035781.1:2644370 128.3 481430 3751.0 16:11:35.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:11:37.509 INFO ProgressMeter - NC_035781.1:2711968 128.5 481910 3749.7 16:11:37.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:11:47.669 INFO ProgressMeter - NC_035781.1:2766092 128.7 482310 3747.8 16:11:55.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:11:55.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:11:57.709 INFO ProgressMeter - NC_035781.1:2839556 128.9 482860 3747.2 16:12:02.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:12:08.057 INFO ProgressMeter - NC_035781.1:2880084 129.0 483170 3744.6 16:12:13.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:12:18.142 INFO ProgressMeter - NC_035781.1:2926735 129.2 483530 3742.6 16:12:28.225 INFO ProgressMeter - NC_035781.1:2955657 129.4 483750 3739.4 16:12:38.341 INFO ProgressMeter - NC_035781.1:3017235 129.5 484240 3738.3 16:12:48.537 INFO ProgressMeter - NC_035781.1:3046398 129.7 484460 3735.1 16:12:58.716 INFO ProgressMeter - NC_035781.1:3070029 129.9 484640 3731.6 16:13:08.917 INFO ProgressMeter - NC_035781.1:3118115 130.0 485010 3729.6 16:13:09.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:13:09.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:13:19.398 INFO ProgressMeter - NC_035781.1:3176428 130.2 485450 3728.0 16:13:24.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:13:30.019 INFO ProgressMeter - NC_035781.1:3271803 130.4 486230 3728.9 16:13:30.069 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:13:35.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:13:37.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:13:37.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:13:37.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:13:37.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:13:37.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:13:37.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:13:37.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:13:40.312 INFO ProgressMeter - NC_035781.1:3349341 130.6 486820 3728.5 16:13:50.415 INFO ProgressMeter - NC_035781.1:3389297 130.7 487130 3726.1 16:14:00.508 INFO ProgressMeter - NC_035781.1:3442746 130.9 487490 3724.0 16:14:10.543 INFO ProgressMeter - NC_035781.1:3497059 131.1 487930 3722.6 16:14:15.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:15.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:15.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:15.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:15.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:15.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:15.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:15.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:15.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:15.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:19.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:19.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:20.759 INFO ProgressMeter - NC_035781.1:3565710 131.2 488470 3721.9 16:14:29.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:30.035 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:14:31.277 INFO ProgressMeter - NC_035781.1:3634598 131.4 489020 3721.1 16:14:41.284 INFO ProgressMeter - NC_035781.1:3714460 131.6 489620 3721.0 16:14:51.596 INFO ProgressMeter - NC_035781.1:3790235 131.8 490190 3720.5 16:14:54.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:15:02.421 INFO ProgressMeter - NC_035781.1:3832998 131.9 490540 3718.0 16:15:13.705 INFO ProgressMeter - NC_035781.1:3883582 132.1 490950 3715.8 16:15:14.354 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:15:14.854 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:15:24.362 INFO ProgressMeter - NC_035781.1:3926865 132.3 491250 3713.1 16:15:34.387 INFO ProgressMeter - NC_035781.1:4026039 132.5 492010 3714.2 16:15:35.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:15:35.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:15:44.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:15:44.199 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:15:44.441 INFO ProgressMeter - NC_035781.1:4105997 132.6 492630 3714.1 16:15:54.730 INFO ProgressMeter - NC_035781.1:4165848 132.8 493120 3713.0 16:15:56.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:15:56.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:15:57.115 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:16:04.897 INFO ProgressMeter - NC_035781.1:4229889 133.0 493640 3712.2 16:16:15.616 INFO ProgressMeter - NC_035781.1:4303377 133.2 494200 3711.4 16:16:17.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:16:18.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:16:25.660 INFO ProgressMeter - NC_035781.1:4384988 133.3 494800 3711.3 16:16:31.863 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:16:31.863 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:16:36.061 INFO ProgressMeter - NC_035781.1:4430377 133.5 495150 3709.1 16:16:46.941 INFO ProgressMeter - NC_035781.1:4469953 133.7 495440 3706.2 16:16:52.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:16:52.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:16:54.235 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:16:56.997 INFO ProgressMeter - NC_035781.1:4626749 133.8 496630 3710.5 16:16:57.877 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:17:07.195 INFO ProgressMeter - NC_035781.1:4712608 134.0 497330 3711.0 16:17:16.522 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:17:17.402 INFO ProgressMeter - NC_035781.1:4764715 134.2 497760 3709.5 16:17:19.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:17:27.959 INFO ProgressMeter - NC_035781.1:4810505 134.4 498110 3707.2 16:17:28.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:17:28.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:17:38.168 INFO ProgressMeter - NC_035781.1:4872292 134.5 498580 3706.0 16:17:42.485 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:17:48.183 INFO ProgressMeter - NC_035781.1:4917073 134.7 498950 3704.2 16:17:58.101 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:17:58.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:17:59.268 INFO ProgressMeter - NC_035781.1:4976742 134.9 499400 3702.5 16:17:59.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:18:09.302 INFO ProgressMeter - NC_035781.1:5045874 135.1 499890 3701.5 16:18:19.374 INFO ProgressMeter - NC_035781.1:5086459 135.2 500190 3699.1 16:18:29.380 INFO ProgressMeter - NC_035781.1:5138358 135.4 500560 3697.3 16:18:29.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:18:30.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:18:30.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:18:39.826 INFO ProgressMeter - NC_035781.1:5200637 135.6 501050 3696.2 16:18:39.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:18:49.860 INFO ProgressMeter - NC_035781.1:5248289 135.7 501430 3694.4 16:18:56.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:19:00.756 INFO ProgressMeter - NC_035781.1:5303012 135.9 501820 3692.3 16:19:10.948 INFO ProgressMeter - NC_035781.1:5346618 136.1 502180 3690.4 16:19:20.971 INFO ProgressMeter - NC_035781.1:5387038 136.2 502500 3688.2 16:19:31.862 INFO ProgressMeter - NC_035781.1:5440037 136.4 502920 3686.4 16:19:42.915 INFO ProgressMeter - NC_035781.1:5479731 136.6 503250 3683.8 16:19:53.083 INFO ProgressMeter - NC_035781.1:5523134 136.8 503520 3681.2 16:20:03.542 INFO ProgressMeter - NC_035781.1:5591862 137.0 504060 3680.5 16:20:13.858 INFO ProgressMeter - NC_035781.1:5635526 137.1 504380 3678.2 16:20:24.288 INFO ProgressMeter - NC_035781.1:5653371 137.3 504490 3674.4 16:20:34.756 INFO ProgressMeter - NC_035781.1:5697856 137.5 504820 3672.1 16:20:44.994 INFO ProgressMeter - NC_035781.1:5789414 137.6 505450 3672.1 16:20:50.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:20:53.714 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:20:55.155 INFO ProgressMeter - NC_035781.1:5815356 137.8 505640 3669.0 16:21:05.272 INFO ProgressMeter - NC_035781.1:5884950 138.0 506200 3668.6 16:21:10.016 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:21:15.779 INFO ProgressMeter - NC_035781.1:5918612 138.2 506460 3665.8 16:21:26.516 INFO ProgressMeter - NC_035781.1:5936169 138.3 506590 3662.0 16:21:36.722 INFO ProgressMeter - NC_035781.1:5995475 138.5 507010 3660.5 16:21:39.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:21:40.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:21:40.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:21:42.783 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:21:43.211 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:21:47.093 INFO ProgressMeter - NC_035781.1:6159613 138.7 508080 3663.7 16:21:57.103 INFO ProgressMeter - NC_035781.1:6207371 138.8 508470 3662.1 16:22:07.873 INFO ProgressMeter - NC_035781.1:6275684 139.0 508980 3661.0 16:22:11.965 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:22:18.502 INFO ProgressMeter - NC_035781.1:6343423 139.2 509500 3660.1 16:22:20.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:22:20.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:22:28.988 INFO ProgressMeter - NC_035781.1:6384894 139.4 509830 3657.9 16:22:29.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:22:30.990 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:22:39.048 INFO ProgressMeter - NC_035781.1:6515764 139.5 510800 3660.4 16:22:42.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:22:43.315 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:22:48.338 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:22:49.197 INFO ProgressMeter - NC_035781.1:6602903 139.7 511500 3661.0 16:22:51.029 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:22:51.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:22:52.472 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:22:59.340 INFO ProgressMeter - NC_035781.1:6707225 139.9 512280 3662.2 16:23:09.366 INFO ProgressMeter - NC_035781.1:6763167 140.1 512710 3660.9 16:23:11.803 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:23:19.444 INFO ProgressMeter - NC_035781.1:6813164 140.2 513100 3659.3 16:23:29.526 INFO ProgressMeter - NC_035781.1:6869829 140.4 513530 3657.9 16:23:39.882 INFO ProgressMeter - NC_035781.1:6963279 140.6 514140 3657.8 16:23:46.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:23:46.541 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:23:50.305 INFO ProgressMeter - NC_035781.1:7040903 140.7 514590 3656.5 16:24:00.647 INFO ProgressMeter - NC_035781.1:7139451 140.9 515390 3657.7 16:24:02.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:24:10.701 INFO ProgressMeter - NC_035781.1:7212372 141.1 515990 3657.6 16:24:21.069 INFO ProgressMeter - NC_035781.1:7246526 141.2 516280 3655.2 16:24:24.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:24:24.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:24:31.168 INFO ProgressMeter - NC_035781.1:7310876 141.4 516780 3654.3 16:24:31.234 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:24:33.428 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:24:41.358 INFO ProgressMeter - NC_035781.1:7355591 141.6 517100 3652.2 16:24:51.417 INFO ProgressMeter - NC_035781.1:7410367 141.8 517500 3650.7 16:25:01.597 INFO ProgressMeter - NC_035781.1:7466490 141.9 517950 3649.5 16:25:11.851 INFO ProgressMeter - NC_035781.1:7526975 142.1 518430 3648.5 16:25:22.389 INFO ProgressMeter - NC_035781.1:7573441 142.3 518820 3646.8 16:25:23.880 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:25:23.881 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:25:32.766 INFO ProgressMeter - NC_035781.1:7633662 142.4 519300 3645.7 16:25:43.362 INFO ProgressMeter - NC_035781.1:7669495 142.6 519560 3643.0 16:25:43.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:25:48.908 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:25:53.516 INFO ProgressMeter - NC_035781.1:7717330 142.8 519950 3641.4 16:26:03.518 INFO ProgressMeter - NC_035781.1:7778629 143.0 520400 3640.3 16:26:14.246 INFO ProgressMeter - NC_035781.1:7820112 143.1 520740 3638.2 16:26:24.785 INFO ProgressMeter - NC_035781.1:7865252 143.3 521090 3636.1 16:26:34.880 INFO ProgressMeter - NC_035781.1:7925001 143.5 521580 3635.3 16:26:45.115 INFO ProgressMeter - NC_035781.1:7976812 143.6 521980 3633.8 16:26:52.015 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:26:55.310 INFO ProgressMeter - NC_035781.1:8141443 143.8 522780 3635.0 16:27:05.738 INFO ProgressMeter - NC_035781.1:8191916 144.0 523100 3632.9 16:27:06.172 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:27:09.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:27:09.166 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:27:10.318 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:27:15.840 INFO ProgressMeter - NC_035781.1:8350201 144.2 523920 3634.3 16:27:18.832 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:27:25.909 INFO ProgressMeter - NC_035781.1:8398015 144.3 524280 3632.6 16:27:36.034 INFO ProgressMeter - NC_035781.1:8467001 144.5 524800 3631.9 16:27:38.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:27:46.997 INFO ProgressMeter - NC_035781.1:8550343 144.7 525440 3631.8 16:27:52.987 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:27:53.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:27:54.912 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:27:54.912 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:27:54.912 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:27:57.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:27:57.018 INFO ProgressMeter - NC_035781.1:8609512 144.8 525930 3631.0 16:28:07.091 INFO ProgressMeter - NC_035781.1:8659602 145.0 526340 3629.6 16:28:17.962 INFO ProgressMeter - NC_035781.1:8715271 145.2 526730 3627.7 16:28:28.215 INFO ProgressMeter - NC_035781.1:8771522 145.4 527120 3626.2 16:28:30.216 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:28:35.250 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:28:36.682 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:28:38.387 INFO ProgressMeter - NC_035781.1:8827226 145.5 527540 3624.8 16:28:42.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:28:48.881 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:28:48.971 INFO ProgressMeter - NC_035781.1:8927553 145.7 528310 3625.7 16:28:54.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:28:59.070 INFO ProgressMeter - NC_035781.1:8994803 145.9 528780 3624.8 16:29:07.507 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:29:09.523 INFO ProgressMeter - NC_035781.1:9063906 146.1 529340 3624.3 16:29:12.504 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:29:19.639 INFO ProgressMeter - NC_035781.1:9122112 146.2 529820 3623.4 16:29:26.705 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:29:26.705 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:29:28.137 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:29:29.798 INFO ProgressMeter - NC_035781.1:9163455 146.4 530150 3621.4 16:29:40.016 INFO ProgressMeter - NC_035781.1:9253352 146.6 530790 3621.6 16:29:50.034 INFO ProgressMeter - NC_035781.1:9297483 146.7 531130 3619.8 16:29:55.278 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:29:59.167 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:29:59.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:30:00.957 INFO ProgressMeter - NC_035781.1:9378181 146.9 531780 3619.7 16:30:06.678 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:30:11.147 INFO ProgressMeter - NC_035781.1:9450655 147.1 532360 3619.5 16:30:11.640 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:30:15.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:30:20.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:30:21.200 INFO ProgressMeter - NC_035781.1:9494975 147.2 532720 3617.8 16:30:27.520 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:30:27.520 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:30:32.051 INFO ProgressMeter - NC_035781.1:9556156 147.4 533160 3616.4 16:30:32.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:30:43.461 INFO ProgressMeter - NC_035781.1:9576072 147.6 533300 3612.7 16:30:53.541 INFO ProgressMeter - NC_035781.1:9611317 147.8 533570 3610.4 16:30:57.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:30:58.575 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:31:03.890 INFO ProgressMeter - NC_035781.1:9652372 148.0 533890 3608.3 16:31:03.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:31:03.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:31:13.958 INFO ProgressMeter - NC_035781.1:9672566 148.1 534040 3605.3 16:31:24.399 INFO ProgressMeter - NC_035781.1:9734865 148.3 534550 3604.5 16:31:34.628 INFO ProgressMeter - NC_035781.1:9911763 148.5 535870 3609.2 16:31:46.188 INFO ProgressMeter - NC_035781.1:9959558 148.7 536270 3607.2 16:31:56.369 INFO ProgressMeter - NC_035781.1:10010933 148.8 536660 3605.7 16:32:00.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:32:06.437 INFO ProgressMeter - NC_035781.1:10064018 149.0 537050 3604.3 16:32:11.092 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:32:17.353 INFO ProgressMeter - NC_035781.1:10104024 149.2 537350 3601.9 16:32:27.709 INFO ProgressMeter - NC_035781.1:10174652 149.4 537870 3601.2 16:32:36.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:32:36.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:32:38.096 INFO ProgressMeter - NC_035781.1:10224650 149.5 538270 3599.7 16:32:41.859 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:32:42.828 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:32:42.829 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:32:48.332 INFO ProgressMeter - NC_035781.1:10383451 149.7 539460 3603.6 16:32:51.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:32:54.944 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:32:58.513 INFO ProgressMeter - NC_035781.1:10442179 149.9 539910 3602.5 16:33:03.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:33:08.964 INFO ProgressMeter - NC_035781.1:10490033 150.0 540260 3600.7 16:33:19.126 INFO ProgressMeter - NC_035781.1:10525114 150.2 540540 3598.5 16:33:24.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:33:27.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:33:29.601 INFO ProgressMeter - NC_035781.1:10582199 150.4 540970 3597.1 16:33:34.850 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:33:34.953 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:33:40.052 INFO ProgressMeter - NC_035781.1:10653873 150.6 541530 3596.7 16:33:49.038 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:33:51.638 INFO ProgressMeter - NC_035781.1:10701958 150.8 541890 3594.5 16:34:01.943 INFO ProgressMeter - NC_035781.1:10802683 150.9 542560 3594.8 16:34:12.320 INFO ProgressMeter - NC_035781.1:10915678 151.1 543510 3597.0 16:34:21.717 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:34:22.481 INFO ProgressMeter - NC_035781.1:10999923 151.3 544170 3597.3 16:34:24.255 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:34:33.524 INFO ProgressMeter - NC_035781.1:11028404 151.5 544370 3594.3 16:34:33.676 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:34:36.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:34:43.940 INFO ProgressMeter - NC_035781.1:11100353 151.6 544940 3593.9 16:34:50.728 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:34:54.081 INFO ProgressMeter - NC_035781.1:11187901 151.8 545570 3594.1 16:35:04.204 INFO ProgressMeter - NC_035781.1:11250159 152.0 546000 3592.9 16:35:14.212 INFO ProgressMeter - NC_035781.1:11334164 152.1 546670 3593.4 16:35:15.756 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:35:16.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:35:24.845 INFO ProgressMeter - NC_035781.1:11492776 152.3 547560 3595.0 16:35:35.333 INFO ProgressMeter - NC_035781.1:11577208 152.5 548240 3595.4 16:35:38.332 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:35:39.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:35:41.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:35:45.380 INFO ProgressMeter - NC_035781.1:11701394 152.7 549250 3598.1 16:35:46.443 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:35:48.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:35:56.845 INFO ProgressMeter - NC_035781.1:11750219 152.8 549650 3596.2 16:36:06.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:36:07.162 INFO ProgressMeter - NC_035781.1:11805374 153.0 550100 3595.1 16:36:17.586 INFO ProgressMeter - NC_035781.1:11877730 153.2 550650 3594.6 16:36:27.869 INFO ProgressMeter - NC_035781.1:11939049 153.4 551120 3593.6 16:36:38.114 INFO ProgressMeter - NC_035781.1:11989734 153.5 551530 3592.3 16:36:48.213 INFO ProgressMeter - NC_035781.1:12061226 153.7 552020 3591.6 16:36:58.267 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:36:58.274 INFO ProgressMeter - NC_035781.1:12117131 153.9 552440 3590.4 16:37:08.736 INFO ProgressMeter - NC_035781.1:12201132 154.0 553060 3590.3 16:37:10.571 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:37:17.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:37:18.904 INFO ProgressMeter - NC_035781.1:12276238 154.2 553630 3590.1 16:37:22.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:37:29.279 INFO ProgressMeter - NC_035781.1:12351671 154.4 554220 3589.9 16:37:39.319 INFO ProgressMeter - NC_035781.1:12415794 154.6 554700 3589.1 16:37:42.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:37:42.544 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:37:47.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:37:50.067 INFO ProgressMeter - NC_035781.1:12485200 154.7 555260 3588.6 16:38:00.174 INFO ProgressMeter - NC_035781.1:12562717 154.9 555790 3588.1 16:38:10.301 INFO ProgressMeter - NC_035781.1:12602082 155.1 556100 3586.2 16:38:20.658 INFO ProgressMeter - NC_035781.1:12650809 155.2 556550 3585.1 16:38:30.733 INFO ProgressMeter - NC_035781.1:12703302 155.4 556980 3584.0 16:38:32.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:38:32.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:38:36.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:38:41.059 INFO ProgressMeter - NC_035781.1:12815696 155.6 557800 3585.3 16:38:51.855 INFO ProgressMeter - NC_035781.1:12885043 155.8 558290 3584.3 16:38:57.753 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:39:02.556 INFO ProgressMeter - NC_035781.1:12931004 155.9 558620 3582.3 16:39:12.730 INFO ProgressMeter - NC_035781.1:12974654 156.1 558960 3580.6 16:39:22.995 INFO ProgressMeter - NC_035781.1:13028851 156.3 559400 3579.5 16:39:30.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:39:30.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:39:33.091 INFO ProgressMeter - NC_035781.1:13068598 156.4 559690 3577.5 16:39:43.096 INFO ProgressMeter - NC_035781.1:13132713 156.6 560200 3577.0 16:39:49.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:39:49.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:39:53.287 INFO ProgressMeter - NC_035781.1:13230423 156.8 560970 3578.0 16:40:03.685 INFO ProgressMeter - NC_035781.1:13283522 157.0 561380 3576.6 16:40:05.101 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:40:05.101 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:40:05.101 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:40:05.101 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:40:09.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:40:15.107 INFO ProgressMeter - NC_035781.1:13330898 157.1 561730 3574.5 16:40:25.195 INFO ProgressMeter - NC_035781.1:13361100 157.3 561980 3572.3 16:40:25.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:40:35.415 INFO ProgressMeter - NC_035781.1:13412972 157.5 562420 3571.2 16:40:36.261 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:40:45.855 INFO ProgressMeter - NC_035781.1:13493906 157.7 563070 3571.4 16:40:47.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:40:55.955 INFO ProgressMeter - NC_035781.1:13570356 157.8 563660 3571.4 16:41:05.962 INFO ProgressMeter - NC_035781.1:13654168 158.0 564320 3571.8 16:41:07.014 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:41:07.516 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:41:11.035 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:41:11.035 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:41:16.324 INFO ProgressMeter - NC_035781.1:13690736 158.2 564590 3569.6 16:41:26.685 INFO ProgressMeter - NC_035781.1:13713441 158.3 564770 3566.8 16:41:32.172 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:41:32.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:41:33.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:41:36.845 INFO ProgressMeter - NC_035781.1:13759266 158.5 565100 3565.1 16:41:38.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:41:40.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:41:46.971 INFO ProgressMeter - NC_035781.1:13794574 158.7 565360 3562.9 16:41:57.021 INFO ProgressMeter - NC_035781.1:13846155 158.8 565770 3561.8 16:42:07.255 INFO ProgressMeter - NC_035781.1:13897871 159.0 566170 3560.4 16:42:18.295 INFO ProgressMeter - NC_035781.1:13932867 159.2 566430 3558.0 16:42:28.329 INFO ProgressMeter - NC_035781.1:13991104 159.4 566870 3557.0 16:42:28.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:42:28.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:42:28.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:42:28.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:42:28.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:42:28.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:42:28.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:42:28.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:42:28.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:42:28.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:42:28.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:42:37.799 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:42:38.329 INFO ProgressMeter - NC_035781.1:14049643 159.5 567310 3556.0 16:42:48.620 INFO ProgressMeter - NC_035781.1:14100062 159.7 567670 3554.5 16:42:58.995 INFO ProgressMeter - NC_035781.1:14189462 159.9 568370 3555.0 16:43:03.542 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:43:08.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:43:09.038 INFO ProgressMeter - NC_035781.1:14262265 160.0 568940 3554.8 16:43:15.714 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:43:15.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:43:19.085 INFO ProgressMeter - NC_035781.1:14314499 160.2 569340 3553.6 16:43:29.246 INFO ProgressMeter - NC_035781.1:14378285 160.4 569820 3552.9 16:43:30.792 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:43:39.927 INFO ProgressMeter - NC_035781.1:14426173 160.6 570190 3551.2 16:43:50.308 INFO ProgressMeter - NC_035781.1:14481783 160.7 570570 3549.8 16:44:00.313 INFO ProgressMeter - NC_035781.1:14524671 160.9 570890 3548.1 16:44:00.492 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:44:00.492 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:44:00.492 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:44:10.515 INFO ProgressMeter - NC_035781.1:14592704 161.1 571390 3547.4 16:44:14.146 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:44:20.586 INFO ProgressMeter - NC_035781.1:14640465 161.2 571750 3546.0 16:44:26.775 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:44:30.742 INFO ProgressMeter - NC_035781.1:14705933 161.4 572180 3544.9 16:44:31.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:44:32.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:44:40.877 INFO ProgressMeter - NC_035781.1:14785624 161.6 572630 3544.0 16:44:51.100 INFO ProgressMeter - NC_035781.1:14836765 161.7 573040 3542.8 16:45:01.449 INFO ProgressMeter - NC_035781.1:14922958 161.9 573730 3543.3 16:45:11.915 INFO ProgressMeter - NC_035781.1:14981043 162.1 574190 3542.3 16:45:22.862 INFO ProgressMeter - NC_035781.1:15026647 162.3 574510 3540.3 16:45:32.954 INFO ProgressMeter - NC_035781.1:15100822 162.4 575040 3539.9 16:45:36.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:45:36.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:45:36.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:45:43.410 INFO ProgressMeter - NC_035781.1:15241075 162.6 575840 3541.0 16:45:54.146 INFO ProgressMeter - NC_035781.1:15317813 162.8 576450 3540.9 16:46:04.189 INFO ProgressMeter - NC_035781.1:15366872 163.0 576810 3539.5 16:46:08.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:46:14.276 INFO ProgressMeter - NC_035781.1:15420168 163.1 577180 3538.1 16:46:17.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:46:24.264 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:46:24.322 INFO ProgressMeter - NC_035781.1:15463404 163.3 577510 3536.5 16:46:30.880 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:46:34.356 INFO ProgressMeter - NC_035781.1:15512699 163.5 577880 3535.1 16:46:44.391 INFO ProgressMeter - NC_035781.1:15566541 163.6 578300 3534.1 16:46:44.419 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:46:54.745 INFO ProgressMeter - NC_035781.1:15626897 163.8 578760 3533.2 16:46:56.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:46:56.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:05.011 INFO ProgressMeter - NC_035781.1:15707843 164.0 579380 3533.3 16:47:08.139 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:08.139 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:08.139 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:08.139 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:08.139 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:08.139 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:14.840 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:14.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:15.281 INFO ProgressMeter - NC_035781.1:15873787 164.2 580540 3536.6 16:47:17.149 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:17.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:25.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:25.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:25.374 INFO ProgressMeter - NC_035781.1:16037021 164.3 581680 3540.0 16:47:25.402 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:35.383 INFO ProgressMeter - NC_035781.1:16270516 164.5 583220 3545.7 16:47:45.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:45.875 INFO ProgressMeter - NC_035781.1:16429713 164.7 584290 3548.5 16:47:47.683 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:47:55.898 INFO ProgressMeter - NC_035781.1:16488042 164.8 584790 3547.9 16:48:06.361 INFO ProgressMeter - NC_035781.1:16536403 165.0 585180 3546.5 16:48:07.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:48:07.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:48:07.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:48:16.767 INFO ProgressMeter - NC_035781.1:16591956 165.2 585620 3545.5 16:48:26.995 INFO ProgressMeter - NC_035781.1:16639104 165.3 585950 3543.8 16:48:37.463 INFO ProgressMeter - NC_035781.1:16699663 165.5 586420 3542.9 16:48:47.812 INFO ProgressMeter - NC_035781.1:16757399 165.7 586880 3542.0 16:48:49.040 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:48:51.871 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:48:54.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:48:58.045 INFO ProgressMeter - NC_035781.1:16854614 165.9 587540 3542.3 16:48:58.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:48:58.199 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:48:58.199 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:48:59.583 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:48:59.890 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:03.662 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:03.662 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:03.663 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:06.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:07.002 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:08.331 INFO ProgressMeter - NC_035781.1:16971116 166.0 588300 3543.2 16:49:10.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:13.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:17.998 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:19.243 INFO ProgressMeter - NC_035781.1:17090625 166.2 589160 3544.5 16:49:21.719 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:22.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:27.216 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:28.644 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:28.644 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:29.304 INFO ProgressMeter - NC_035781.1:17218283 166.4 590120 3546.7 16:49:29.657 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:32.211 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:33.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:39.336 INFO ProgressMeter - NC_035781.1:17336369 166.6 591030 3548.6 16:49:42.792 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:47.884 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:47.884 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:47.884 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:49.304 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:49.342 INFO ProgressMeter - NC_035781.1:17635395 166.7 592970 3556.7 16:49:52.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:52.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:58.092 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:49:59.593 INFO ProgressMeter - NC_035781.1:17845332 166.9 594400 3561.7 16:50:00.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:00.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:01.586 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:09.598 INFO ProgressMeter - NC_035781.1:18094352 167.1 596040 3567.9 16:50:09.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:10.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:10.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:19.602 INFO ProgressMeter - NC_035781.1:18391045 167.2 597880 3575.4 16:50:20.184 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:22.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:22.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:25.754 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:25.754 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:25.754 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:25.754 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:29.731 INFO ProgressMeter - NC_035781.1:18530733 167.4 598760 3577.0 16:50:30.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:33.099 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:35.745 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:36.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:36.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:38.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:38.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:40.002 INFO ProgressMeter - NC_035781.1:18874896 167.6 600830 3585.7 16:50:43.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:49.469 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:50.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:50.011 INFO ProgressMeter - NC_035781.1:19101238 167.7 602480 3592.0 16:50:54.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:55.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:59.102 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:50:59.103 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:51:00.377 INFO ProgressMeter - NC_035781.1:19290287 167.9 603810 3596.2 16:51:10.497 INFO ProgressMeter - NC_035781.1:19360796 168.1 604370 3595.9 16:51:12.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:51:20.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:51:20.585 INFO ProgressMeter - NC_035781.1:19438917 168.2 604980 3596.0 16:51:24.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:51:30.603 INFO ProgressMeter - NC_035781.1:19506668 168.4 605500 3595.5 16:51:33.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:51:35.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:51:35.964 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:51:39.227 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:51:40.906 INFO ProgressMeter - NC_035781.1:19660811 168.6 606610 3598.4 16:51:48.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:51:50.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:51:51.401 INFO ProgressMeter - NC_035781.1:19786103 168.8 607550 3600.2 16:51:53.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:51:53.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:51:53.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:52:01.616 INFO ProgressMeter - NC_035781.1:19896128 168.9 608290 3601.0 16:52:05.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:52:13.179 INFO ProgressMeter - NC_035781.1:19953339 169.1 608710 3599.4 16:52:21.943 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:52:23.200 INFO ProgressMeter - NC_035781.1:20011579 169.3 609170 3598.5 16:52:32.105 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:52:33.269 INFO ProgressMeter - NC_035781.1:20094915 169.5 609810 3598.8 16:52:43.340 INFO ProgressMeter - NC_035781.1:20137027 169.6 610140 3597.1 16:52:53.832 INFO ProgressMeter - NC_035781.1:20184732 169.8 610530 3595.7 16:52:58.069 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:53:02.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:53:05.297 INFO ProgressMeter - NC_035781.1:20240461 170.0 610960 3594.2 16:53:15.446 INFO ProgressMeter - NC_035781.1:20312945 170.2 611550 3594.1 16:53:25.679 INFO ProgressMeter - NC_035781.1:20396745 170.3 612210 3594.4 16:53:27.232 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:53:30.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:53:32.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:53:36.941 INFO ProgressMeter - NC_035781.1:20473534 170.5 612800 3593.9 16:53:40.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:53:41.985 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:53:43.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:53:43.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:53:46.963 INFO ProgressMeter - NC_035781.1:20551154 170.7 613430 3594.1 16:53:57.257 INFO ProgressMeter - NC_035781.1:20619259 170.8 614000 3593.8 16:54:03.243 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:54:03.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:54:07.015 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:54:07.561 INFO ProgressMeter - NC_035781.1:20682271 171.0 614520 3593.2 16:54:17.638 INFO ProgressMeter - NC_035781.1:20762814 171.2 615200 3593.7 16:54:20.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:54:20.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:54:27.977 INFO ProgressMeter - NC_035781.1:20829532 171.4 615740 3593.2 16:54:38.256 INFO ProgressMeter - NC_035781.1:20953048 171.5 616780 3595.7 16:54:48.553 INFO ProgressMeter - NC_035781.1:21143000 171.7 618320 3601.1 16:54:58.643 INFO ProgressMeter - NC_035781.1:21234357 171.9 619040 3601.7 16:55:00.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:00.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:00.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:06.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:06.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:06.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:06.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:06.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:06.410 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:08.657 INFO ProgressMeter - NC_035781.1:21354296 172.0 619950 3603.5 16:55:19.050 INFO ProgressMeter - NC_035781.1:21519183 172.2 621220 3607.3 16:55:24.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:26.175 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:29.068 INFO ProgressMeter - NC_035781.1:21687257 172.4 622500 3611.2 16:55:30.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:39.150 INFO ProgressMeter - NC_035781.1:21841411 172.5 623460 3613.3 16:55:49.170 INFO ProgressMeter - NC_035781.1:22005876 172.7 624750 3617.2 16:55:53.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:58.041 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:55:59.294 INFO ProgressMeter - NC_035781.1:22207280 172.9 626400 3623.2 16:56:02.070 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:04.339 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:09.314 INFO ProgressMeter - NC_035781.1:22496778 173.1 628600 3632.5 16:56:09.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:09.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:10.756 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:14.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:14.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:19.326 INFO ProgressMeter - NC_035781.1:22833477 173.2 631170 3643.8 16:56:28.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:29.354 INFO ProgressMeter - NC_035781.1:22987482 173.4 632430 3647.6 16:56:37.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:37.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:39.361 INFO ProgressMeter - NC_035781.1:23043966 173.6 632880 3646.6 16:56:49.575 INFO ProgressMeter - NC_035781.1:23113986 173.7 633430 3646.2 16:56:52.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:52.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:52.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:56:59.855 INFO ProgressMeter - NC_035781.1:23184518 173.9 634000 3645.9 16:57:09.906 INFO ProgressMeter - NC_035781.1:23244009 174.1 634480 3645.2 16:57:12.171 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:57:17.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:57:20.056 INFO ProgressMeter - NC_035781.1:23329310 174.2 635140 3645.4 16:57:27.831 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:57:30.088 INFO ProgressMeter - NC_035781.1:23489242 174.4 636460 3649.5 16:57:40.148 INFO ProgressMeter - NC_035781.1:23685139 174.6 637900 3654.2 16:57:44.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:57:44.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:57:44.231 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:57:46.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:57:47.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:57:50.501 INFO ProgressMeter - NC_035781.1:23786792 174.7 638650 3654.9 16:57:58.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:58:01.064 INFO ProgressMeter - NC_035781.1:24045537 174.9 640640 3662.6 16:58:02.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:58:02.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:58:02.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:58:11.320 INFO ProgressMeter - NC_035781.1:24101787 175.1 641100 3661.7 16:58:21.338 INFO ProgressMeter - NC_035781.1:24145241 175.3 641450 3660.2 16:58:33.134 INFO ProgressMeter - NC_035781.1:24170660 175.4 641650 3657.2 16:58:43.774 INFO ProgressMeter - NC_035781.1:24200964 175.6 641890 3654.9 16:58:51.115 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:58:54.430 INFO ProgressMeter - NC_035781.1:24271542 175.8 642420 3654.2 16:59:02.673 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:59:05.349 INFO ProgressMeter - NC_035781.1:24318756 176.0 642820 3652.7 16:59:16.382 INFO ProgressMeter - NC_035781.1:24367116 176.2 643180 3650.9 16:59:26.470 INFO ProgressMeter - NC_035781.1:24422229 176.3 643590 3649.8 16:59:28.953 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:59:32.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:59:36.647 INFO ProgressMeter - NC_035781.1:24517414 176.5 644380 3650.7 16:59:46.911 INFO ProgressMeter - NC_035781.1:24631653 176.7 645230 3652.0 16:59:48.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:59:52.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 16:59:57.131 INFO ProgressMeter - NC_035781.1:24813606 176.8 646360 3654.9 16:59:59.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:03.027 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:04.303 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:05.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:06.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:07.209 INFO ProgressMeter - NC_035781.1:25017546 177.0 647560 3658.2 17:00:07.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:17.322 INFO ProgressMeter - NC_035781.1:25185692 177.2 648690 3661.1 17:00:17.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:17.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:17.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:17.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:17.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:17.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:17.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:17.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:17.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:27.534 INFO ProgressMeter - NC_035781.1:25418146 177.4 650190 3666.0 17:00:37.696 INFO ProgressMeter - NC_035781.1:25427954 177.5 650270 3663.0 17:00:47.863 INFO ProgressMeter - NC_035781.1:25569362 177.7 651250 3665.0 17:00:51.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:00:57.949 INFO ProgressMeter - NC_035781.1:25803358 177.9 652930 3671.0 17:01:08.291 INFO ProgressMeter - NC_035781.1:25887392 178.0 653670 3671.6 17:01:18.339 INFO ProgressMeter - NC_035781.1:25947283 178.2 654150 3670.9 17:01:28.443 INFO ProgressMeter - NC_035781.1:26000554 178.4 654560 3669.7 17:01:31.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:01:38.606 INFO ProgressMeter - NC_035781.1:26089217 178.5 655200 3669.8 17:01:48.982 INFO ProgressMeter - NC_035781.1:26137782 178.7 655560 3668.2 17:01:58.994 INFO ProgressMeter - NC_035781.1:26185557 178.9 655910 3666.8 17:02:08.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:02:09.009 INFO ProgressMeter - NC_035781.1:26264367 179.0 656550 3666.9 17:02:19.415 INFO ProgressMeter - NC_035781.1:26325112 179.2 657040 3666.1 17:02:28.787 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:02:29.523 INFO ProgressMeter - NC_035781.1:26382229 179.4 657440 3664.9 17:02:39.529 INFO ProgressMeter - NC_035781.1:26431749 179.6 657840 3663.7 17:02:44.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:02:49.685 INFO ProgressMeter - NC_035781.1:26501158 179.7 658390 3663.3 17:02:59.811 INFO ProgressMeter - NC_035781.1:26562542 179.9 658910 3662.8 17:03:09.924 INFO ProgressMeter - NC_035781.1:26623632 180.1 659380 3662.0 17:03:19.994 INFO ProgressMeter - NC_035781.1:26710948 180.2 660020 3662.1 17:03:24.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:03:24.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:03:30.040 INFO ProgressMeter - NC_035781.1:26760844 180.4 660390 3660.8 17:03:40.777 INFO ProgressMeter - NC_035781.1:26812641 180.6 660840 3659.6 17:03:45.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:03:45.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:03:47.054 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:03:50.798 INFO ProgressMeter - NC_035781.1:26854453 180.7 661140 3657.9 17:04:00.876 INFO ProgressMeter - NC_035781.1:26889225 180.9 661390 3655.9 17:04:02.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:10.921 INFO ProgressMeter - NC_035781.1:26942772 181.1 661790 3654.7 17:04:21.177 INFO ProgressMeter - NC_035781.1:27021130 181.2 662360 3654.4 17:04:24.978 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:24.978 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:25.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:27.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:27.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:27.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:27.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:31.320 INFO ProgressMeter - NC_035781.1:27245154 181.4 663990 3660.0 17:04:33.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:40.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:41.331 INFO ProgressMeter - NC_035781.1:27442238 181.6 665280 3663.8 17:04:45.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:51.353 INFO ProgressMeter - NC_035781.1:27629502 181.8 666520 3667.2 17:04:53.178 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:53.178 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:04:56.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:00.503 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:01.353 INFO ProgressMeter - NC_035781.1:27853039 181.9 667890 3671.4 17:05:02.267 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:04.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:04.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:04.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:07.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:11.662 INFO ProgressMeter - NC_035781.1:28260233 182.1 670380 3681.6 17:05:12.252 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:13.777 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:13.777 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:21.690 INFO ProgressMeter - NC_035781.1:28459193 182.3 671710 3685.5 17:05:21.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:23.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:23.447 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:29.140 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:29.141 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:30.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:31.885 INFO ProgressMeter - NC_035781.1:28668317 182.4 673120 3689.8 17:05:34.220 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:34.980 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:37.284 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:38.484 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:40.474 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:41.921 INFO ProgressMeter - NC_035781.1:28922816 182.6 674600 3694.5 17:05:45.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:05:52.127 INFO ProgressMeter - NC_035781.1:29132160 182.8 676060 3699.1 17:06:02.563 INFO ProgressMeter - NC_035781.1:29169250 182.9 676340 3697.1 17:06:09.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:06:09.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:06:09.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:06:09.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:06:09.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:06:09.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:06:09.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:06:09.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:06:13.761 INFO ProgressMeter - NC_035781.1:29244917 183.1 676820 3695.9 17:06:23.820 INFO ProgressMeter - NC_035781.1:29299279 183.3 677230 3694.8 17:06:34.315 INFO ProgressMeter - NC_035781.1:29361936 183.5 677720 3694.0 17:06:44.398 INFO ProgressMeter - NC_035781.1:29406488 183.6 678070 3692.5 17:06:47.564 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:06:54.983 INFO ProgressMeter - NC_035781.1:29486155 183.8 678620 3691.9 17:07:04.500 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:07:05.258 INFO ProgressMeter - NC_035781.1:29532724 184.0 679000 3690.6 17:07:15.284 INFO ProgressMeter - NC_035781.1:29572935 184.2 679320 3688.9 17:07:25.858 INFO ProgressMeter - NC_035781.1:29606356 184.3 679590 3686.9 17:07:35.911 INFO ProgressMeter - NC_035781.1:29656401 184.5 679990 3685.7 17:07:46.021 INFO ProgressMeter - NC_035781.1:29690342 184.7 680260 3683.8 17:07:56.036 INFO ProgressMeter - NC_035781.1:29757570 184.8 680800 3683.4 17:07:56.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:08:08.052 INFO ProgressMeter - NC_035781.1:29799271 185.0 681090 3681.0 17:08:17.607 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:08:18.093 INFO ProgressMeter - NC_035781.1:29882617 185.2 681730 3681.1 17:08:20.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:08:28.147 INFO ProgressMeter - NC_035781.1:29949336 185.4 682250 3680.6 17:08:38.292 INFO ProgressMeter - NC_035781.1:30005365 185.5 682690 3679.6 17:08:41.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:08:42.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:08:48.944 INFO ProgressMeter - NC_035781.1:30053046 185.7 683050 3678.0 17:08:59.211 INFO ProgressMeter - NC_035781.1:30093807 185.9 683340 3676.2 17:09:09.952 INFO ProgressMeter - NC_035781.1:30128584 186.1 683610 3674.1 17:09:20.022 INFO ProgressMeter - NC_035781.1:30163290 186.2 683870 3672.2 17:09:30.076 INFO ProgressMeter - NC_035781.1:30222041 186.4 684320 3671.3 17:09:40.901 INFO ProgressMeter - NC_035781.1:30248870 186.6 684520 3668.8 17:09:46.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:09:51.055 INFO ProgressMeter - NC_035781.1:30289534 186.7 684820 3667.1 17:10:01.077 INFO ProgressMeter - NC_035781.1:30433072 186.9 685910 3669.7 17:10:11.709 INFO ProgressMeter - NC_035781.1:30496578 187.1 686410 3668.9 17:10:19.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:10:19.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:10:19.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:10:22.055 INFO ProgressMeter - NC_035781.1:30546003 187.3 686800 3667.6 17:10:26.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:10:32.627 INFO ProgressMeter - NC_035781.1:30590232 187.4 687140 3665.9 17:10:42.646 INFO ProgressMeter - NC_035781.1:30621169 187.6 687380 3663.9 17:10:52.839 INFO ProgressMeter - NC_035781.1:30654071 187.8 687630 3662.0 17:10:59.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:10:59.208 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:11:03.130 INFO ProgressMeter - NC_035781.1:30714265 187.9 688060 3660.9 17:11:13.152 INFO ProgressMeter - NC_035781.1:30766157 188.1 688480 3659.9 17:11:13.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:11:13.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:11:23.425 INFO ProgressMeter - NC_035781.1:30807680 188.3 688810 3658.3 17:11:33.830 INFO ProgressMeter - NC_035781.1:30841814 188.5 689070 3656.3 17:11:44.372 INFO ProgressMeter - NC_035781.1:30906782 188.6 689590 3655.7 17:11:54.633 INFO ProgressMeter - NC_035781.1:30948185 188.8 689910 3654.1 17:12:03.309 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:12:04.897 INFO ProgressMeter - NC_035781.1:30990583 189.0 690240 3652.5 17:12:15.349 INFO ProgressMeter - NC_035781.1:31046939 189.2 690630 3651.2 17:12:25.978 INFO ProgressMeter - NC_035781.1:31095564 189.3 690970 3649.6 17:12:36.110 INFO ProgressMeter - NC_035781.1:31138356 189.5 691330 3648.2 17:12:46.114 INFO ProgressMeter - NC_035781.1:31185628 189.7 691680 3646.9 17:12:51.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:12:56.149 INFO ProgressMeter - NC_035781.1:31244073 189.8 692110 3645.9 17:13:06.869 INFO ProgressMeter - NC_035781.1:31312885 190.0 692580 3645.0 17:13:16.890 INFO ProgressMeter - NC_035781.1:31370265 190.2 693070 3644.3 17:13:26.922 INFO ProgressMeter - NC_035781.1:31452937 190.3 693670 3644.3 17:13:27.449 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:27.856 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:35.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:35.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:35.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:36.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:37.026 INFO ProgressMeter - NC_035781.1:31660602 190.5 694860 3647.3 17:13:40.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:40.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:40.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:42.783 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:42.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:42.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:47.034 INFO ProgressMeter - NC_035781.1:31907447 190.7 696480 3652.6 17:13:47.041 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:47.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:48.446 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:50.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:50.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:13:57.491 INFO ProgressMeter - NC_035781.1:32139136 190.9 698020 3657.4 17:14:07.498 INFO ProgressMeter - NC_035781.1:32211275 191.0 698610 3657.3 17:14:07.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:14:07.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:14:13.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:14:15.682 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:14:15.953 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:14:16.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:14:17.522 INFO ProgressMeter - NC_035781.1:32564605 191.2 700350 3663.2 17:14:21.570 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:14:23.613 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:14:23.613 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:14:27.537 INFO ProgressMeter - NC_035781.1:32828786 191.4 702060 3668.9 17:14:32.458 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:14:37.631 INFO ProgressMeter - NC_035781.1:32941478 191.5 702810 3669.6 17:14:44.038 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:14:48.158 INFO ProgressMeter - NC_035781.1:32997675 191.7 703240 3668.5 17:14:58.170 INFO ProgressMeter - NC_035781.1:33058424 191.9 703720 3667.8 17:15:08.318 INFO ProgressMeter - NC_035781.1:33152903 192.0 704480 3668.5 17:15:18.769 INFO ProgressMeter - NC_035781.1:33216819 192.2 704970 3667.7 17:15:19.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:15:19.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:15:19.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:15:23.486 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:15:23.486 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:15:28.857 INFO ProgressMeter - NC_035781.1:33366004 192.4 706130 3670.6 17:15:34.070 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:15:34.071 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:15:34.134 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:15:39.430 INFO ProgressMeter - NC_035781.1:33443524 192.6 706770 3670.5 17:15:45.252 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:15:49.490 INFO ProgressMeter - NC_035781.1:33536911 192.7 707470 3671.0 17:15:54.644 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:15:59.505 INFO ProgressMeter - NC_035781.1:33606058 192.9 708030 3670.7 17:16:10.267 INFO ProgressMeter - NC_035781.1:33629296 193.1 708220 3668.3 17:16:13.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:16:20.430 INFO ProgressMeter - NC_035781.1:33819924 193.2 709490 3671.6 17:16:30.464 INFO ProgressMeter - NC_035781.1:34013470 193.4 710840 3675.4 17:16:32.469 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:16:32.469 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:16:34.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:16:39.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:16:40.476 INFO ProgressMeter - NC_035781.1:34168350 193.6 711810 3677.3 17:16:40.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:16:41.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:16:50.769 INFO ProgressMeter - NC_035781.1:34410195 193.7 713200 3681.2 17:16:53.506 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:16:57.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:16:59.495 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:16:59.495 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:16:59.800 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:00.773 INFO ProgressMeter - NC_035781.1:34647918 193.9 714680 3685.7 17:17:04.629 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:07.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:10.264 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:10.851 INFO ProgressMeter - NC_035781.1:34974816 194.1 716480 3691.7 17:17:15.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:16.745 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:16.745 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:17.431 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:17.431 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:18.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:18.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:18.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:20.916 INFO ProgressMeter - NC_035781.1:35184208 194.2 717830 3695.5 17:17:28.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:28.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:28.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:31.363 INFO ProgressMeter - NC_035781.1:35278619 194.4 718510 3695.7 17:17:40.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:41.404 INFO ProgressMeter - NC_035781.1:35346888 194.6 719090 3695.5 17:17:51.455 INFO ProgressMeter - NC_035781.1:35398255 194.8 719450 3694.2 17:17:55.329 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:55.330 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:58.871 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:17:58.905 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:01.822 INFO ProgressMeter - NC_035781.1:35452364 194.9 719840 3692.9 17:18:12.112 INFO ProgressMeter - NC_035781.1:35520249 195.1 720390 3692.5 17:18:19.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:22.576 INFO ProgressMeter - NC_035781.1:35589810 195.3 720970 3692.1 17:18:32.629 INFO ProgressMeter - NC_035781.1:35649585 195.4 721440 3691.4 17:18:42.789 INFO ProgressMeter - NC_035781.1:35704012 195.6 721860 3690.3 17:18:44.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:46.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:46.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:47.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:47.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:47.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:47.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:47.875 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:49.216 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:50.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:50.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:18:52.927 INFO ProgressMeter - NC_035781.1:35883911 195.8 723060 3693.3 17:18:57.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:00.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:00.977 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:02.994 INFO ProgressMeter - NC_035781.1:36031822 195.9 724040 3695.1 17:19:05.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:05.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:05.328 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:11.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:11.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:13.040 INFO ProgressMeter - NC_035781.1:36207338 196.1 725330 3698.5 17:19:22.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:22.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:22.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:22.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:22.313 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:23.218 INFO ProgressMeter - NC_035781.1:36357684 196.3 726350 3700.5 17:19:25.494 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:27.717 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:27.717 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:29.598 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:33.374 INFO ProgressMeter - NC_035781.1:36468746 196.5 727230 3701.8 17:19:39.296 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:39.297 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:39.297 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:43.951 INFO ProgressMeter - NC_035781.1:36512052 196.6 727540 3700.1 17:19:44.151 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:50.933 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:51.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:53.485 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:54.758 INFO ProgressMeter - NC_035781.1:36611381 196.8 728290 3700.5 17:19:59.109 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:59.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:19:59.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:20:03.078 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:20:03.078 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:20:04.774 INFO ProgressMeter - NC_035781.1:36673009 197.0 728740 3699.7 17:20:06.200 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:20:06.201 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:20:06.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:20:06.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:20:09.955 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:20:15.196 INFO ProgressMeter - NC_035781.1:36737316 197.1 729260 3699.0 17:20:24.077 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:20:26.086 INFO ProgressMeter - NC_035781.1:36794986 197.3 729720 3698.0 17:20:31.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:20:36.219 INFO ProgressMeter - NC_035781.1:36848531 197.5 730160 3697.0 17:20:41.315 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:20:46.380 INFO ProgressMeter - NC_035781.1:36894129 197.7 730560 3695.9 17:20:56.547 INFO ProgressMeter - NC_035781.1:36950761 197.8 730990 3694.9 17:21:06.659 INFO ProgressMeter - NC_035781.1:37019795 198.0 731540 3694.5 17:21:06.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:21:15.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:21:16.718 INFO ProgressMeter - NC_035781.1:37101838 198.2 732120 3694.3 17:21:19.021 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:21:19.022 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:21:26.741 INFO ProgressMeter - NC_035781.1:37241970 198.3 733060 3696.0 17:21:36.905 INFO ProgressMeter - NC_035781.1:37322061 198.5 733700 3696.0 17:21:47.110 INFO ProgressMeter - NC_035781.1:37382143 198.7 734200 3695.4 17:21:57.161 INFO ProgressMeter - NC_035781.1:37426401 198.8 734570 3694.1 17:22:04.850 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:22:04.850 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:22:05.600 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:22:07.398 INFO ProgressMeter - NC_035781.1:37473820 199.0 734930 3692.8 17:22:14.256 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:22:17.637 INFO ProgressMeter - NC_035781.1:37551961 199.2 735570 3692.8 17:22:24.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:22:24.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:22:24.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:22:27.798 INFO ProgressMeter - NC_035781.1:37642348 199.4 736260 3693.1 17:22:38.780 INFO ProgressMeter - NC_035781.1:37703770 199.5 736690 3691.9 17:22:49.118 INFO ProgressMeter - NC_035781.1:37746467 199.7 737010 3690.3 17:22:59.528 INFO ProgressMeter - NC_035781.1:37778270 199.9 737250 3688.3 17:23:09.776 INFO ProgressMeter - NC_035781.1:37835402 200.1 737680 3687.3 17:23:10.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:23:10.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:23:19.392 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:23:19.392 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:23:19.833 INFO ProgressMeter - NC_035781.1:37917111 200.2 738380 3687.7 17:23:29.913 INFO ProgressMeter - NC_035781.1:37973349 200.4 738850 3687.0 17:23:41.349 INFO ProgressMeter - NC_035781.1:38030851 200.6 739290 3685.7 17:23:51.375 INFO ProgressMeter - NC_035781.1:38086066 200.8 739570 3684.0 17:24:01.729 INFO ProgressMeter - NC_035781.1:38163794 200.9 740170 3683.8 17:24:11.752 INFO ProgressMeter - NC_035781.1:38234452 201.1 740740 3683.6 17:24:11.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:24:16.793 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:24:18.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:24:22.309 INFO ProgressMeter - NC_035781.1:38269211 201.3 741010 3681.7 17:24:23.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:24:32.898 INFO ProgressMeter - NC_035781.1:38326423 201.4 741480 3680.8 17:24:42.919 INFO ProgressMeter - NC_035781.1:38389513 201.6 741990 3680.3 17:24:44.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:24:44.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:24:45.496 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:24:52.952 INFO ProgressMeter - NC_035781.1:38452584 201.8 742500 3679.8 17:24:56.063 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:25:03.063 INFO ProgressMeter - NC_035781.1:38539931 201.9 743200 3680.2 17:25:13.205 INFO ProgressMeter - NC_035781.1:38579209 202.1 743490 3678.5 17:25:20.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:25:23.256 INFO ProgressMeter - NC_035781.1:38635690 202.3 743920 3677.6 17:25:24.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:25:33.491 INFO ProgressMeter - NC_035781.1:38676592 202.5 744220 3676.0 17:25:42.521 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:25:43.696 INFO ProgressMeter - NC_035781.1:38738042 202.6 744640 3675.0 17:25:53.722 INFO ProgressMeter - NC_035781.1:38871707 202.8 745530 3676.3 17:26:03.760 INFO ProgressMeter - NC_035781.1:39093421 203.0 746950 3680.3 17:26:04.872 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:05.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:08.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:09.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:13.784 INFO ProgressMeter - NC_035781.1:39402878 203.1 749020 3687.5 17:26:20.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:23.875 INFO ProgressMeter - NC_035781.1:39594152 203.3 750290 3690.7 17:26:26.213 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:28.172 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:28.172 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:28.172 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:31.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:31.994 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:31.994 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:31.995 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:32.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:33.950 INFO ProgressMeter - NC_035781.1:39799214 203.5 751690 3694.5 17:26:36.903 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:36.954 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:36.954 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:43.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:43.962 INFO ProgressMeter - NC_035781.1:40008059 203.6 753020 3698.0 17:26:47.488 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:47.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:48.625 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:26:54.801 INFO ProgressMeter - NC_035781.1:40186845 203.8 754210 3700.6 17:27:05.501 INFO ProgressMeter - NC_035781.1:40242931 204.0 754630 3699.4 17:27:15.521 INFO ProgressMeter - NC_035781.1:40276494 204.2 754890 3697.6 17:27:18.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:27:25.588 INFO ProgressMeter - NC_035781.1:40355507 204.3 755510 3697.6 17:27:36.240 INFO ProgressMeter - NC_035781.1:40433731 204.5 756150 3697.6 17:27:46.378 INFO ProgressMeter - NC_035781.1:40494716 204.7 756580 3696.6 17:27:46.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:27:56.598 INFO ProgressMeter - NC_035781.1:40562959 204.8 757130 3696.2 17:28:01.785 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:28:02.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:28:06.626 INFO ProgressMeter - NC_035781.1:40617795 205.0 757520 3695.1 17:28:07.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:28:16.786 INFO ProgressMeter - NC_035781.1:40691176 205.2 758050 3694.6 17:28:27.243 INFO ProgressMeter - NC_035781.1:40737352 205.3 758420 3693.3 17:28:37.477 INFO ProgressMeter - NC_035781.1:40771549 205.5 758680 3691.5 17:28:47.605 INFO ProgressMeter - NC_035781.1:40817123 205.7 759060 3690.3 17:28:58.014 INFO ProgressMeter - NC_035781.1:40882996 205.9 759570 3689.7 17:29:06.683 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:29:08.028 INFO ProgressMeter - NC_035781.1:40934069 206.0 759940 3688.5 17:29:18.302 INFO ProgressMeter - NC_035781.1:40992686 206.2 760390 3687.6 17:29:22.139 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:29:28.633 INFO ProgressMeter - NC_035781.1:41041515 206.4 760780 3686.4 17:29:30.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:29:30.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:29:31.276 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:29:38.813 INFO ProgressMeter - NC_035781.1:41094517 206.5 761170 3685.3 17:29:49.064 INFO ProgressMeter - NC_035781.1:41202366 206.7 761910 3685.8 17:29:59.930 INFO ProgressMeter - NC_035781.1:41270144 206.9 762450 3685.2 17:30:10.090 INFO ProgressMeter - NC_035781.1:41329537 207.1 762920 3684.5 17:30:18.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:30:20.132 INFO ProgressMeter - NC_035781.1:41400991 207.2 763480 3684.2 17:30:30.161 INFO ProgressMeter - NC_035781.1:41463288 207.4 763970 3683.6 17:30:34.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:30:34.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:30:40.218 INFO ProgressMeter - NC_035781.1:41515085 207.6 764360 3682.5 17:30:41.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:30:41.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:30:41.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:30:41.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:30:50.221 INFO ProgressMeter - NC_035781.1:41570850 207.7 764810 3681.7 17:30:52.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:30:53.922 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:30:53.922 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:30:53.922 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:31:00.539 INFO ProgressMeter - NC_035781.1:41613638 207.9 765160 3680.3 17:31:08.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:31:08.859 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:31:10.565 INFO ProgressMeter - NC_035781.1:41685349 208.1 765730 3680.1 17:31:20.976 INFO ProgressMeter - NC_035781.1:41753286 208.2 766220 3679.4 17:31:28.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:31:31.003 INFO ProgressMeter - NC_035781.1:41826250 208.4 766750 3679.0 17:31:41.080 INFO ProgressMeter - NC_035781.1:41877170 208.6 767140 3677.9 17:31:51.153 INFO ProgressMeter - NC_035781.1:41897244 208.7 767290 3675.7 17:32:01.222 INFO ProgressMeter - NC_035781.1:41978326 208.9 767910 3675.7 17:32:06.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:32:11.238 INFO ProgressMeter - NC_035781.1:42041152 209.1 768390 3675.0 17:32:19.374 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:32:19.374 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:32:20.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:32:20.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:32:20.779 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:32:21.334 INFO ProgressMeter - NC_035781.1:42112212 209.3 768960 3674.8 17:32:31.515 INFO ProgressMeter - NC_035781.1:42187734 209.4 769570 3674.8 17:32:36.263 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:32:41.977 INFO ProgressMeter - NC_035781.1:42235666 209.6 769940 3673.5 17:32:52.165 INFO ProgressMeter - NC_035781.1:42278594 209.8 770280 3672.1 17:32:59.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:33:02.378 INFO ProgressMeter - NC_035781.1:42372400 209.9 771010 3672.6 17:33:11.290 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:33:12.607 INFO ProgressMeter - NC_035781.1:42480215 210.1 771570 3672.3 17:33:13.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:33:13.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:33:13.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:33:14.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:33:17.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:33:17.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:33:22.772 INFO ProgressMeter - NC_035781.1:42542751 210.3 772020 3671.5 17:33:33.044 INFO ProgressMeter - NC_035781.1:42605949 210.4 772490 3670.7 17:33:38.461 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:33:38.461 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:33:43.123 INFO ProgressMeter - NC_035781.1:42662954 210.6 772890 3669.7 17:33:53.644 INFO ProgressMeter - NC_035781.1:42707234 210.8 773210 3668.2 17:34:03.652 INFO ProgressMeter - NC_035781.1:42729856 211.0 773380 3666.1 17:34:07.239 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:34:07.239 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:34:08.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:34:08.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:34:08.355 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:34:14.158 INFO ProgressMeter - NC_035781.1:42802333 211.1 773950 3665.7 17:34:20.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:34:24.323 INFO ProgressMeter - NC_035781.1:42874679 211.3 774490 3665.3 17:34:31.885 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:34:32.437 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:34:34.521 INFO ProgressMeter - NC_035781.1:42928326 211.5 774940 3664.5 17:34:44.726 INFO ProgressMeter - NC_035781.1:42959953 211.6 775160 3662.6 17:34:55.332 INFO ProgressMeter - NC_035781.1:43031447 211.8 775720 3662.2 17:35:05.968 INFO ProgressMeter - NC_035781.1:43121906 212.0 776430 3662.5 17:35:12.558 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:35:16.123 INFO ProgressMeter - NC_035781.1:43163699 212.2 776780 3661.2 17:35:26.352 INFO ProgressMeter - NC_035781.1:43246984 212.3 777450 3661.4 17:35:27.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:35:29.014 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:35:36.834 INFO ProgressMeter - NC_035781.1:43291871 212.5 777800 3660.1 17:35:46.978 INFO ProgressMeter - NC_035781.1:43333187 212.7 778130 3658.7 17:35:57.007 INFO ProgressMeter - NC_035781.1:43405375 212.8 778660 3658.3 17:36:04.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:04.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:05.494 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:05.494 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:06.404 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:06.648 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:06.648 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:07.048 INFO ProgressMeter - NC_035781.1:43516929 213.0 779500 3659.4 17:36:17.340 INFO ProgressMeter - NC_035781.1:43587743 213.2 780050 3659.0 17:36:17.663 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:19.082 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:24.024 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:27.365 INFO ProgressMeter - NC_035781.1:43652616 213.4 780570 3658.6 17:36:29.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:29.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:37.408 INFO ProgressMeter - NC_035781.1:43844999 213.5 781860 3661.8 17:36:38.571 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:47.410 INFO ProgressMeter - NC_035781.1:44109568 213.7 783600 3667.1 17:36:55.914 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:55.914 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:55.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:55.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:55.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:55.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:55.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:55.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:55.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:55.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:55.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:36:58.060 INFO ProgressMeter - NC_035781.1:44345089 213.9 785160 3671.3 17:37:04.799 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:37:08.399 INFO ProgressMeter - NC_035781.1:44506071 214.0 786310 3673.7 17:37:12.798 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:37:13.235 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:37:15.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:37:15.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:37:18.408 INFO ProgressMeter - NC_035781.1:44685638 214.2 787500 3676.4 17:37:21.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:37:28.464 INFO ProgressMeter - NC_035781.1:44895812 214.4 788990 3680.5 17:37:30.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:37:38.493 INFO ProgressMeter - NC_035781.1:45079671 214.5 790250 3683.5 17:37:48.798 INFO ProgressMeter - NC_035781.1:45172345 214.7 790980 3684.0 17:37:58.909 INFO ProgressMeter - NC_035781.1:45266497 214.9 791730 3684.6 17:38:02.989 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:38:08.944 INFO ProgressMeter - NC_035781.1:45309039 215.0 792040 3683.1 17:38:15.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:38:15.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:38:20.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:38:20.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:38:20.721 INFO ProgressMeter - NC_035781.1:45421071 215.2 792920 3683.9 17:38:23.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:38:24.040 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:38:25.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:38:27.175 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:38:30.724 INFO ProgressMeter - NC_035781.1:45678010 215.4 794670 3689.1 17:38:40.763 INFO ProgressMeter - NC_035781.1:45891080 215.6 796410 3694.4 17:38:41.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:38:51.160 INFO ProgressMeter - NC_035781.1:45974612 215.7 797040 3694.3 17:38:53.144 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:38:55.129 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:01.239 INFO ProgressMeter - NC_035781.1:46093975 215.9 797870 3695.3 17:39:10.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:11.640 INFO ProgressMeter - NC_035781.1:46181276 216.1 798560 3695.5 17:39:15.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:15.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:19.329 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:19.483 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:21.816 INFO ProgressMeter - NC_035781.1:46285636 216.3 799400 3696.5 17:39:21.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:22.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:25.220 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:25.787 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:25.787 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:25.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:27.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:27.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:28.766 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:28.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:31.860 INFO ProgressMeter - NC_035781.1:46506515 216.4 801110 3701.5 17:39:31.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:31.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:31.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:32.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:32.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:32.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:33.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:37.115 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:37.481 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:37.481 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:41.884 INFO ProgressMeter - NC_035781.1:46705082 216.6 802420 3704.7 17:39:51.935 INFO ProgressMeter - NC_035781.1:46813590 216.8 803240 3705.6 17:39:55.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:39:55.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:01.937 INFO ProgressMeter - NC_035781.1:47081390 216.9 804960 3710.7 17:40:03.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:05.745 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:05.746 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:08.657 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:12.045 INFO ProgressMeter - NC_035781.1:47266046 217.1 806190 3713.5 17:40:13.166 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:13.261 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:13.661 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:13.661 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:13.661 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:16.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:16.857 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:22.078 INFO ProgressMeter - NC_035781.1:47475280 217.3 807590 3717.1 17:40:32.095 INFO ProgressMeter - NC_035781.1:47598984 217.4 808430 3718.1 17:40:39.412 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:42.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:42.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:42.105 INFO ProgressMeter - NC_035781.1:47789402 217.6 809700 3721.1 17:40:42.718 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:42.718 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:42.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:45.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:48.517 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:51.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:40:52.112 INFO ProgressMeter - NC_035781.1:48077684 217.8 811600 3727.0 17:40:55.583 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:41:00.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:41:01.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:41:02.480 INFO ProgressMeter - NC_035781.1:48309721 217.9 813130 3731.0 17:41:12.513 INFO ProgressMeter - NC_035781.1:48574567 218.1 814940 3736.5 17:41:15.558 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:41:20.885 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:41:22.559 INFO ProgressMeter - NC_035781.1:48865076 218.3 816770 3742.0 17:41:23.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:41:23.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:41:26.290 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:41:32.825 INFO ProgressMeter - NC_035781.1:48995481 218.4 817750 3743.5 17:41:36.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:41:43.023 INFO ProgressMeter - NC_035781.1:49031243 218.6 818020 3741.9 17:41:48.026 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:41:53.253 INFO ProgressMeter - NC_035781.1:49086198 218.8 818470 3741.0 17:41:57.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:42:03.463 INFO ProgressMeter - NC_035781.1:49129304 219.0 818780 3739.5 17:42:13.534 INFO ProgressMeter - NC_035781.1:49256228 219.1 819700 3740.9 17:42:19.259 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:42:23.592 INFO ProgressMeter - NC_035781.1:49490579 219.3 821260 3745.1 17:42:33.759 INFO ProgressMeter - NC_035781.1:49739703 219.5 823040 3750.3 17:42:34.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:42:40.823 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:42:41.408 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:42:41.531 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:42:41.531 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:42:43.646 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:42:43.771 INFO ProgressMeter - NC_035781.1:49920186 219.6 824240 3752.9 17:42:46.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:42:49.530 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:42:49.530 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:42:53.783 INFO ProgressMeter - NC_035781.1:50159675 219.8 825790 3757.1 17:43:03.815 INFO ProgressMeter - NC_035781.1:50420791 220.0 827510 3762.1 17:43:08.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:43:13.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:43:13.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:43:13.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:43:13.904 INFO ProgressMeter - NC_035781.1:50623946 220.1 828840 3765.3 17:43:23.912 INFO ProgressMeter - NC_035781.1:50886788 220.3 830510 3770.0 17:43:33.919 INFO ProgressMeter - NC_035781.1:51070070 220.5 831800 3773.0 17:43:34.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:43:37.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:43:43.924 INFO ProgressMeter - NC_035781.1:51303582 220.6 833220 3776.6 17:43:53.958 INFO ProgressMeter - NC_035781.1:51460976 220.8 834330 3778.8 17:43:58.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:43:58.854 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:01.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:03.995 INFO ProgressMeter - NC_035781.1:51606169 221.0 835480 3781.1 17:44:04.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:05.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:05.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:05.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:05.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:08.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:09.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:14.006 INFO ProgressMeter - NC_035781.1:51716503 221.1 836270 3781.8 17:44:16.953 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:16.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:17.254 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:17.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:24.184 INFO ProgressMeter - NC_035781.1:51834127 221.3 837160 3782.9 17:44:27.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:34.611 INFO ProgressMeter - NC_035781.1:51890258 221.5 837610 3782.0 17:44:37.015 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:37.016 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:37.016 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:37.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:44.672 INFO ProgressMeter - NC_035781.1:52036059 221.6 838410 3782.8 17:44:51.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:44:55.848 INFO ProgressMeter - NC_035781.1:52160886 221.8 838990 3782.2 17:45:01.339 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:45:01.339 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:45:06.039 INFO ProgressMeter - NC_035781.1:52201648 222.0 839300 3780.7 17:45:16.353 INFO ProgressMeter - NC_035781.1:52255734 222.2 839710 3779.6 17:45:26.421 INFO ProgressMeter - NC_035781.1:52297858 222.3 840050 3778.3 17:45:27.040 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:45:27.857 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:45:36.626 INFO ProgressMeter - NC_035781.1:52341577 222.5 840420 3777.1 17:45:47.898 INFO ProgressMeter - NC_035781.1:52410706 222.7 840950 3776.3 17:45:58.296 INFO ProgressMeter - NC_035781.1:52467839 222.9 841400 3775.3 17:46:01.426 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:46:01.426 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:46:08.516 INFO ProgressMeter - NC_035781.1:52511120 223.0 841740 3774.0 17:46:18.738 INFO ProgressMeter - NC_035781.1:52571995 223.2 842250 3773.4 17:46:29.582 INFO ProgressMeter - NC_035781.1:52636561 223.4 842790 3772.8 17:46:40.148 INFO ProgressMeter - NC_035781.1:52705645 223.6 843330 3772.2 17:46:50.196 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:46:50.196 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:46:50.196 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:46:50.208 INFO ProgressMeter - NC_035781.1:52778036 223.7 843840 3771.6 17:47:00.267 INFO ProgressMeter - NC_035781.1:52835180 223.9 844320 3771.0 17:47:07.271 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:47:10.485 INFO ProgressMeter - NC_035781.1:52933522 224.1 845070 3771.5 17:47:20.654 INFO ProgressMeter - NC_035781.1:52963996 224.2 845320 3769.7 17:47:31.215 INFO ProgressMeter - NC_035781.1:53007847 224.4 845660 3768.3 17:47:33.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:47:39.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:47:39.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:47:39.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:47:41.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:47:41.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:47:41.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:47:41.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:47:41.266 INFO ProgressMeter - NC_035781.1:53059214 224.6 846000 3767.0 17:47:41.455 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:47:51.910 INFO ProgressMeter - NC_035781.1:53127571 224.8 846540 3766.4 17:48:01.921 INFO ProgressMeter - NC_035781.1:53176234 224.9 846910 3765.3 17:48:03.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:48:08.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:48:12.016 INFO ProgressMeter - NC_035781.1:53251965 225.1 847530 3765.2 17:48:14.082 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:48:17.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:48:17.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:48:22.624 INFO ProgressMeter - NC_035781.1:53313006 225.3 848010 3764.4 17:48:32.881 INFO ProgressMeter - NC_035781.1:53370670 225.4 848460 3763.5 17:48:39.324 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:48:43.078 INFO ProgressMeter - NC_035781.1:53402147 225.6 848690 3761.7 17:48:45.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:48:48.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:48:53.152 INFO ProgressMeter - NC_035781.1:53471515 225.8 849210 3761.2 17:49:03.176 INFO ProgressMeter - NC_035781.1:53539399 225.9 849760 3760.9 17:49:08.493 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:49:13.469 INFO ProgressMeter - NC_035781.1:53596186 226.1 850190 3759.9 17:49:23.729 INFO ProgressMeter - NC_035781.1:53626596 226.3 850430 3758.1 17:49:33.833 INFO ProgressMeter - NC_035781.1:53678953 226.5 850830 3757.1 17:49:35.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:49:36.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:49:36.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:49:36.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:49:36.337 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:49:44.017 INFO ProgressMeter - NC_035781.1:53819696 226.6 851810 3758.6 17:49:45.775 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:49:48.666 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:49:54.117 INFO ProgressMeter - NC_035781.1:54062879 226.8 853430 3763.0 17:50:04.206 INFO ProgressMeter - NC_035781.1:54167577 227.0 854220 3763.7 17:50:14.405 INFO ProgressMeter - NC_035781.1:54205992 227.1 854510 3762.1 17:50:24.447 INFO ProgressMeter - NC_035781.1:54253681 227.3 854880 3761.0 17:50:32.208 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:50:34.683 INFO ProgressMeter - NC_035781.1:54286456 227.5 855120 3759.2 17:50:44.729 INFO ProgressMeter - NC_035781.1:54336336 227.6 855550 3758.3 17:50:49.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:50:49.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:50:54.894 INFO ProgressMeter - NC_035781.1:54396384 227.8 856020 3757.6 17:51:04.953 INFO ProgressMeter - NC_035781.1:54442918 228.0 856390 3756.5 17:51:08.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:51:15.463 INFO ProgressMeter - NC_035781.1:54496191 228.2 856790 3755.3 17:51:26.122 INFO ProgressMeter - NC_035781.1:54551406 228.3 857260 3754.5 17:51:36.247 INFO ProgressMeter - NC_035781.1:54605955 228.5 857710 3753.7 17:51:46.470 INFO ProgressMeter - NC_035781.1:54638213 228.7 857960 3752.0 17:51:56.874 INFO ProgressMeter - NC_035781.1:54683759 228.8 858330 3750.7 17:52:07.182 INFO ProgressMeter - NC_035781.1:54756790 229.0 858900 3750.4 17:52:17.709 INFO ProgressMeter - NC_035781.1:54819829 229.2 859400 3749.7 17:52:27.723 INFO ProgressMeter - NC_035781.1:54941629 229.4 860320 3751.0 17:52:28.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:52:30.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:52:30.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:52:37.920 INFO ProgressMeter - NC_035781.1:55171603 229.5 861920 3755.2 17:52:48.734 INFO ProgressMeter - NC_035781.1:55248401 229.7 862490 3754.7 17:52:57.074 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:52:57.081 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:52:59.337 INFO ProgressMeter - NC_035781.1:55301220 229.9 862910 3753.7 17:53:04.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:04.280 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:05.338 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:09.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:09.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:09.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:09.343 INFO ProgressMeter - NC_035781.1:55452948 230.1 863810 3754.9 17:53:15.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:16.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:16.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:16.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:16.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:18.140 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:18.140 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:18.140 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:19.650 INFO ProgressMeter - NC_035781.1:55665673 230.2 864970 3757.1 17:53:20.209 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:29.655 INFO ProgressMeter - NC_035781.1:55833949 230.4 866030 3759.0 17:53:29.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:39.704 INFO ProgressMeter - NC_035781.1:55954374 230.6 866870 3759.9 17:53:39.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:46.286 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:53:49.738 INFO ProgressMeter - NC_035781.1:56121365 230.7 867940 3761.8 17:53:59.755 INFO ProgressMeter - NC_035781.1:56231863 230.9 868790 3762.8 17:54:05.137 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:05.137 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:07.850 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:07.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:07.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:07.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:07.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:07.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:07.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:07.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:07.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:07.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:09.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:09.160 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:09.841 INFO ProgressMeter - NC_035781.1:56426987 231.1 870080 3765.6 17:54:16.779 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:16.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:16.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:16.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:20.482 INFO ProgressMeter - NC_035781.1:56525519 231.2 870750 3765.6 17:54:22.241 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:23.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:23.860 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:24.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:24.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:27.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:29.717 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:30.517 INFO ProgressMeter - NC_035781.1:56800755 231.4 872700 3771.3 17:54:39.803 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:40.605 INFO ProgressMeter - NC_035781.1:57007277 231.6 873990 3774.2 17:54:44.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:47.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:50.040 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:50.784 INFO ProgressMeter - NC_035781.1:57193469 231.7 875450 3777.7 17:54:51.766 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:52.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:54.590 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:54:56.838 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:00.819 INFO ProgressMeter - NC_035781.1:57336951 231.9 876460 3779.3 17:55:02.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:05.773 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:07.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:07.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:07.894 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:08.074 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:10.821 INFO ProgressMeter - NC_035781.1:57526993 232.1 877570 3781.4 17:55:20.931 INFO ProgressMeter - NC_035781.1:57601013 232.2 878130 3781.1 17:55:24.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:28.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:31.121 INFO ProgressMeter - NC_035781.1:57725272 232.4 879170 3782.8 17:55:33.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:33.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:33.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:41.398 INFO ProgressMeter - NC_035781.1:57834175 232.6 879870 3783.0 17:55:44.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:47.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:55:51.853 INFO ProgressMeter - NC_035781.1:57867495 232.8 880120 3781.2 17:56:01.945 INFO ProgressMeter - NC_035781.1:57902832 232.9 880380 3779.6 17:56:06.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:56:08.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:56:12.373 INFO ProgressMeter - NC_035781.1:57951097 233.1 880760 3778.4 17:56:16.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:56:19.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:56:23.200 INFO ProgressMeter - NC_035781.1:57994202 233.3 881100 3777.0 17:56:24.745 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:56:27.575 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:56:27.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:56:30.333 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:56:33.324 INFO ProgressMeter - NC_035781.1:58137585 233.5 881930 3777.8 17:56:36.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:56:43.332 INFO ProgressMeter - NC_035781.1:58321725 233.6 882880 3779.2 17:56:51.089 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:56:53.503 INFO ProgressMeter - NC_035781.1:58406183 233.8 883520 3779.2 17:56:57.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:56:57.098 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:02.572 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:03.535 INFO ProgressMeter - NC_035781.1:58515211 234.0 884170 3779.2 17:57:08.570 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:12.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:12.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:12.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:12.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:13.644 INFO ProgressMeter - NC_035781.1:58709668 234.1 885470 3782.1 17:57:15.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:20.520 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:23.042 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:23.676 INFO ProgressMeter - NC_035781.1:58835788 234.3 886370 3783.2 17:57:24.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:24.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:27.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:33.801 INFO ProgressMeter - NC_035781.1:59007311 234.5 887380 3784.8 17:57:43.854 INFO ProgressMeter - NC_035781.1:59194049 234.6 888640 3787.5 17:57:49.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:49.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:49.892 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:49.892 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:57:54.394 INFO ProgressMeter - NC_035781.1:59289489 234.8 889320 3787.5 17:58:04.886 INFO ProgressMeter - NC_035781.1:59382955 235.0 889880 3787.1 17:58:10.410 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:58:10.411 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:58:10.411 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:58:16.948 INFO ProgressMeter - NC_035781.1:59409766 235.2 890070 3784.7 17:58:23.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:58:26.081 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:58:26.148 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:58:26.972 INFO ProgressMeter - NC_035781.1:59496848 235.3 890670 3784.5 17:58:30.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:58:37.004 INFO ProgressMeter - NC_035781.1:59539524 235.5 891000 3783.2 17:58:47.006 INFO ProgressMeter - NC_035781.1:59607231 235.7 891500 3782.7 17:58:57.509 INFO ProgressMeter - NC_035781.1:59653541 235.9 891840 3781.3 17:59:08.375 INFO ProgressMeter - NC_035781.1:59691995 236.0 892130 3779.6 17:59:18.767 INFO ProgressMeter - NC_035781.1:59722732 236.2 892350 3777.8 17:59:26.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:59:28.881 INFO ProgressMeter - NC_035781.1:59773554 236.4 892730 3776.7 17:59:32.410 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:59:38.918 INFO ProgressMeter - NC_035781.1:59861134 236.5 893370 3776.8 17:59:48.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:59:49.163 INFO ProgressMeter - NC_035781.1:59961351 236.7 893910 3776.3 17:59:49.776 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 17:59:59.731 INFO ProgressMeter - NC_035781.1:60139881 236.9 894890 3777.6 18:00:00.581 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:07.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:07.748 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:10.286 INFO ProgressMeter - NC_035781.1:60351922 237.1 895950 3779.3 18:00:15.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:15.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:15.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:15.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:19.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:20.319 INFO ProgressMeter - NC_035781.1:60468980 237.2 896650 3779.6 18:00:24.072 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:25.325 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:29.766 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:30.370 INFO ProgressMeter - NC_035781.1:60613708 237.4 897680 3781.3 18:00:32.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:35.212 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:40.380 INFO ProgressMeter - NC_035781.1:60716494 237.6 898440 3781.8 18:00:40.541 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:43.920 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:45.615 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:48.285 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:48.800 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:48.800 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:50.407 INFO ProgressMeter - NC_035781.1:60881782 237.7 899680 3784.4 18:00:51.042 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:51.042 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:51.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:52.033 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:54.887 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:54.888 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:00:57.288 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:01.276 INFO ProgressMeter - NC_035781.1:60942259 237.9 900100 3783.3 18:01:12.885 INFO ProgressMeter - NC_035781.1:60952610 238.1 900170 3780.5 18:01:15.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:16.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:17.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:17.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:17.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:17.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:17.127 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:20.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:20.421 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:23.890 INFO ProgressMeter - NC_035781.1:60969731 238.3 900300 3778.1 18:01:24.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:30.024 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:30.080 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:30.080 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:31.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:31.442 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:33.731 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:34.128 INFO ProgressMeter - NC_035781.1:61031185 238.5 900700 3777.1 18:01:36.307 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:36.308 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:36.533 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:40.788 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:44.232 INFO ProgressMeter - NC_035781.1:61226407 238.6 902060 3780.1 18:01:52.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:54.468 INFO ProgressMeter - NC_035781.1:61453014 238.8 903560 3783.7 18:01:57.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:01:58.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:00.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:00.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:04.499 INFO ProgressMeter - NC_035781.1:61711777 239.0 904850 3786.4 18:02:06.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:06.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:06.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:06.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:06.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:14.645 INFO ProgressMeter - NC_035782.1:96156 239.1 905820 3787.8 18:02:17.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:22.840 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:24.114 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:25.071 INFO ProgressMeter - NC_035782.1:316317 239.3 907310 3791.3 18:02:28.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:28.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:32.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:35.106 INFO ProgressMeter - NC_035782.1:511701 239.5 908470 3793.5 18:02:37.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:43.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:45.429 INFO ProgressMeter - NC_035782.1:778571 239.7 910120 3797.7 18:02:47.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:55.429 INFO ProgressMeter - NC_035782.1:914396 239.8 910830 3798.0 18:02:56.414 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:02:56.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:04.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:05.479 INFO ProgressMeter - NC_035782.1:1373339 240.0 913030 3804.5 18:03:05.743 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:05.850 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:07.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:07.230 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:07.230 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:07.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:13.472 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:14.855 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:15.493 INFO ProgressMeter - NC_035782.1:1884762 240.2 915440 3811.9 18:03:16.756 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:21.144 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:21.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:24.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:25.502 INFO ProgressMeter - NC_035782.1:2145309 240.3 916900 3815.3 18:03:34.598 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:34.598 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:34.598 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:35.036 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:35.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:35.705 INFO ProgressMeter - NC_035782.1:2246541 240.5 917530 3815.2 18:03:37.877 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:37.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:37.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:37.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:37.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:37.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:46.373 INFO ProgressMeter - NC_035782.1:2290576 240.7 917790 3813.5 18:03:46.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:52.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:54.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:56.730 INFO ProgressMeter - NC_035782.1:2400356 240.8 918570 3814.0 18:03:58.086 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:03:59.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:06.755 INFO ProgressMeter - NC_035782.1:2564997 241.0 919660 3815.9 18:04:09.294 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:09.295 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:09.848 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:10.891 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:11.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:15.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:17.041 INFO ProgressMeter - NC_035782.1:2738411 241.2 920660 3817.3 18:04:21.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:25.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:27.245 INFO ProgressMeter - NC_035782.1:2935814 241.3 921880 3819.7 18:04:37.274 INFO ProgressMeter - NC_035782.1:3145469 241.5 922950 3821.5 18:04:41.678 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:47.128 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:47.536 INFO ProgressMeter - NC_035782.1:3231753 241.7 923550 3821.3 18:04:49.748 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:49.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:51.885 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:04:57.546 INFO ProgressMeter - NC_035782.1:3295485 241.9 923940 3820.2 18:05:08.344 INFO ProgressMeter - NC_035782.1:3486096 242.0 924980 3821.7 18:05:18.500 INFO ProgressMeter - NC_035782.1:3498171 242.2 925070 3819.4 18:05:28.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:05:28.664 INFO ProgressMeter - NC_035782.1:3506874 242.4 925120 3816.9 18:05:28.679 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:05:28.679 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:05:28.679 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:05:28.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:05:28.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:05:28.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:05:28.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:05:38.689 INFO ProgressMeter - NC_035782.1:3564224 242.5 925560 3816.1 18:05:49.049 INFO ProgressMeter - NC_035782.1:3710152 242.7 926530 3817.4 18:05:51.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:05:51.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:05:51.236 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:05:55.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:00.843 INFO ProgressMeter - NC_035782.1:3805257 242.9 927100 3816.6 18:06:11.010 INFO ProgressMeter - NC_035782.1:3861731 243.1 927350 3815.0 18:06:15.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:15.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:15.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:16.014 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:16.014 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:21.026 INFO ProgressMeter - NC_035782.1:4075735 243.2 928550 3817.3 18:06:22.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:23.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:23.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:23.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:31.288 INFO ProgressMeter - NC_035782.1:4139044 243.4 928970 3816.4 18:06:40.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:40.679 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:40.884 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:41.338 INFO ProgressMeter - NC_035782.1:4402668 243.6 930390 3819.6 18:06:47.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:47.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:51.410 INFO ProgressMeter - NC_035782.1:4509295 243.8 931110 3819.9 18:06:59.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:59.997 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:59.998 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:59.998 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:59.998 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:59.998 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:06:59.999 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:00.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:01.744 INFO ProgressMeter - NC_035782.1:4642862 243.9 932100 3821.3 18:07:02.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:02.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:02.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:02.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:02.280 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:02.280 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:02.280 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:02.394 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:02.414 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:11.846 INFO ProgressMeter - NC_035782.1:4717033 244.1 932640 3820.8 18:07:22.654 INFO ProgressMeter - NC_035782.1:4752031 244.3 932890 3819.0 18:07:30.897 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:30.898 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:33.828 INFO ProgressMeter - NC_035782.1:4776878 244.5 933060 3816.8 18:07:34.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:34.440 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:34.440 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:41.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:43.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:43.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:43.833 INFO ProgressMeter - NC_035782.1:4892996 244.6 933790 3817.2 18:07:47.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:49.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:07:54.310 INFO ProgressMeter - NC_035782.1:5033985 244.8 934770 3818.5 18:08:04.432 INFO ProgressMeter - NC_035782.1:5242911 245.0 936100 3821.3 18:08:04.995 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:04.995 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:05.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:06.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:08.607 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:09.610 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:10.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:14.559 INFO ProgressMeter - NC_035782.1:5562999 245.1 937780 3825.5 18:08:15.351 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:23.679 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:23.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:24.574 INFO ProgressMeter - NC_035782.1:5734225 245.3 938840 3827.2 18:08:25.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:31.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:31.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:31.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:31.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:33.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:34.628 INFO ProgressMeter - NC_035782.1:5846252 245.5 939560 3827.6 18:08:41.058 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:42.519 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:44.709 INFO ProgressMeter - NC_035782.1:6038665 245.6 940720 3829.7 18:08:49.064 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:49.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:50.697 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:08:54.747 INFO ProgressMeter - NC_035782.1:6185713 245.8 941700 3831.0 18:09:04.748 INFO ProgressMeter - NC_035782.1:6344465 246.0 942730 3832.6 18:09:13.931 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:09:15.528 INFO ProgressMeter - NC_035782.1:6395610 246.2 943100 3831.3 18:09:26.569 INFO ProgressMeter - NC_035782.1:6461335 246.3 943550 3830.3 18:09:29.522 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:09:31.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:09:31.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:09:32.963 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:09:36.771 INFO ProgressMeter - NC_035782.1:6508609 246.5 943920 3829.2 18:09:48.249 INFO ProgressMeter - NC_035782.1:6524006 246.7 944040 3826.7 18:09:59.066 INFO ProgressMeter - NC_035782.1:6541942 246.9 944180 3824.4 18:10:04.823 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:10:09.565 INFO ProgressMeter - NC_035782.1:6586566 247.1 944500 3823.0 18:10:13.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:10:15.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:10:15.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:10:19.766 INFO ProgressMeter - NC_035782.1:6650045 247.2 945010 3822.5 18:10:24.162 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:10:26.448 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:10:28.981 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:10:29.878 INFO ProgressMeter - NC_035782.1:6757293 247.4 945700 3822.7 18:10:40.741 INFO ProgressMeter - NC_035782.1:6854164 247.6 946270 3822.2 18:10:48.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:10:50.774 INFO ProgressMeter - NC_035782.1:6903352 247.7 946690 3821.3 18:10:55.339 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:10:55.340 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:10:57.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:02.592 INFO ProgressMeter - NC_035782.1:7039099 247.9 947510 3821.5 18:11:12.623 INFO ProgressMeter - NC_035782.1:7148740 248.1 948320 3822.2 18:11:17.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:18.307 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:18.308 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:21.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:21.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:21.148 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:21.148 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:21.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:21.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:21.439 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:21.629 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:21.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:21.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:21.891 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:22.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:22.877 INFO ProgressMeter - NC_035782.1:7594964 248.3 950750 3829.4 18:11:23.227 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:32.902 INFO ProgressMeter - NC_035782.1:7793902 248.4 951830 3831.2 18:11:39.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:41.898 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:41.898 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:42.001 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:42.002 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:43.472 INFO ProgressMeter - NC_035782.1:7949411 248.6 952800 3832.4 18:11:46.154 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:46.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:48.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:48.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:11:53.538 INFO ProgressMeter - NC_035782.1:8157400 248.8 954070 3834.9 18:12:04.052 INFO ProgressMeter - NC_035782.1:8289045 249.0 954950 3835.7 18:12:12.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:12:14.079 INFO ProgressMeter - NC_035782.1:8412952 249.1 955780 3836.5 18:12:23.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:12:23.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:12:24.089 INFO ProgressMeter - NC_035782.1:8703027 249.3 957430 3840.5 18:12:34.928 INFO ProgressMeter - NC_035782.1:8902303 249.5 958720 3842.9 18:12:38.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:12:38.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:12:38.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:12:41.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:12:45.460 INFO ProgressMeter - NC_035782.1:9038999 249.7 959580 3843.7 18:12:46.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:12:53.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:12:55.509 INFO ProgressMeter - NC_035782.1:9164920 249.8 960370 3844.2 18:12:58.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:12:59.284 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:12:59.284 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:12:59.284 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:13:05.518 INFO ProgressMeter - NC_035782.1:9265302 250.0 961010 3844.2 18:13:07.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:13:15.997 INFO ProgressMeter - NC_035782.1:9393602 250.2 961640 3844.1 18:13:21.584 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:13:22.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:13:26.044 INFO ProgressMeter - NC_035782.1:9617815 250.3 963190 3847.7 18:13:28.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:13:36.147 INFO ProgressMeter - NC_035782.1:9698697 250.5 963710 3847.2 18:13:36.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:13:36.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:13:46.189 INFO ProgressMeter - NC_035782.1:9845409 250.7 964640 3848.3 18:13:51.364 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:13:57.127 INFO ProgressMeter - NC_035782.1:9941390 250.8 965180 3847.7 18:14:08.135 INFO ProgressMeter - NC_035782.1:10000827 251.0 965640 3846.7 18:14:18.442 INFO ProgressMeter - NC_035782.1:10048977 251.2 965940 3845.3 18:14:28.497 INFO ProgressMeter - NC_035782.1:10092514 251.4 966220 3843.8 18:14:38.527 INFO ProgressMeter - NC_035782.1:10130905 251.5 966500 3842.4 18:14:48.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:14:48.539 INFO ProgressMeter - NC_035782.1:10179956 251.7 966900 3841.4 18:14:51.040 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:14:52.394 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:14:52.394 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:14:53.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:14:58.595 INFO ProgressMeter - NC_035782.1:10329358 251.9 967910 3842.9 18:15:02.792 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:05.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:08.623 INFO ProgressMeter - NC_035782.1:10374241 252.0 968230 3841.6 18:15:16.073 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:16.073 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:18.283 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:18.685 INFO ProgressMeter - NC_035782.1:10447894 252.2 968650 3840.7 18:15:22.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:28.698 INFO ProgressMeter - NC_035782.1:10511622 252.4 969120 3840.0 18:15:39.560 INFO ProgressMeter - NC_035782.1:10614736 252.6 969880 3840.3 18:15:43.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:43.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:43.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:43.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:46.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:49.584 INFO ProgressMeter - NC_035782.1:10809494 252.7 970950 3842.0 18:15:49.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:59.241 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:15:59.607 INFO ProgressMeter - NC_035782.1:10906515 252.9 971680 3842.3 18:16:06.594 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:09.945 INFO ProgressMeter - NC_035782.1:11028300 253.1 972560 3843.2 18:16:10.216 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:14.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:19.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:20.301 INFO ProgressMeter - NC_035782.1:11245319 253.2 973880 3845.8 18:16:20.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:20.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:21.017 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:25.149 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:25.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:30.322 INFO ProgressMeter - NC_035782.1:11400544 253.4 974960 3847.5 18:16:40.410 INFO ProgressMeter - NC_035782.1:11487245 253.6 975650 3847.7 18:16:45.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:45.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:45.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:45.629 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:48.935 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:48.935 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:50.463 INFO ProgressMeter - NC_035782.1:11580146 253.7 976360 3847.9 18:16:53.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:16:54.234 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:17:00.508 INFO ProgressMeter - NC_035782.1:11723609 253.9 977340 3849.2 18:17:01.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:17:02.386 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:17:04.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:17:05.483 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:17:07.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:17:10.600 INFO ProgressMeter - NC_035782.1:11925988 254.1 978890 3852.8 18:17:20.615 INFO ProgressMeter - NC_035782.1:12109813 254.2 980110 3855.1 18:17:21.190 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:17:23.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:17:31.019 INFO ProgressMeter - NC_035782.1:12222616 254.4 980970 3855.8 18:17:41.366 INFO ProgressMeter - NC_035782.1:12312911 254.6 981610 3855.7 18:17:44.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:17:51.547 INFO ProgressMeter - NC_035782.1:12385431 254.8 982160 3855.3 18:17:53.733 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:18:01.775 INFO ProgressMeter - NC_035782.1:12457262 254.9 982750 3855.1 18:18:11.778 INFO ProgressMeter - NC_035782.1:12601177 255.1 983700 3856.3 18:18:21.887 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:18:21.923 INFO ProgressMeter - NC_035782.1:12833361 255.3 985210 3859.6 18:18:32.446 INFO ProgressMeter - NC_035782.1:12911435 255.4 985790 3859.2 18:18:32.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:18:32.495 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:18:34.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:18:43.561 INFO ProgressMeter - NC_035782.1:12979189 255.6 986230 3858.2 18:18:53.978 INFO ProgressMeter - NC_035782.1:12992382 255.8 986330 3855.9 18:19:00.038 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:19:03.997 INFO ProgressMeter - NC_035782.1:13172100 256.0 987540 3858.1 18:19:14.078 INFO ProgressMeter - NC_035782.1:13331716 256.1 988600 3859.8 18:19:24.268 INFO ProgressMeter - NC_035782.1:13451829 256.3 989320 3860.0 18:19:33.726 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:19:33.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:19:34.331 INFO ProgressMeter - NC_035782.1:13496226 256.5 989670 3858.8 18:19:45.036 INFO ProgressMeter - NC_035782.1:13628165 256.6 990370 3858.9 18:19:49.440 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:19:52.243 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:19:52.243 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:19:55.475 INFO ProgressMeter - NC_035782.1:13736126 256.8 990990 3858.7 18:19:56.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:19:56.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:19:56.134 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:19:56.134 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:19:56.134 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:20:05.597 INFO ProgressMeter - NC_035782.1:13811974 257.0 991600 3858.5 18:20:15.651 INFO ProgressMeter - NC_035782.1:13862771 257.2 991990 3857.5 18:20:18.212 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:20:25.654 INFO ProgressMeter - NC_035782.1:13927790 257.3 992490 3857.0 18:20:36.384 INFO ProgressMeter - NC_035782.1:13992261 257.5 992970 3856.2 18:20:46.456 INFO ProgressMeter - NC_035782.1:14032665 257.7 993280 3854.9 18:20:49.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:20:54.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:20:56.261 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:20:56.472 INFO ProgressMeter - NC_035782.1:14185218 257.8 994320 3856.4 18:21:01.553 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:21:03.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:21:06.674 INFO ProgressMeter - NC_035782.1:14334621 258.0 995230 3857.4 18:21:11.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:21:12.092 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:21:14.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:21:15.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:21:16.678 INFO ProgressMeter - NC_035782.1:14492668 258.2 996290 3859.0 18:21:19.438 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:21:20.495 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:21:26.764 INFO ProgressMeter - NC_035782.1:14739548 258.3 997850 3862.5 18:21:26.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:21:37.985 INFO ProgressMeter - NC_035782.1:14983755 258.5 999580 3866.4 18:21:48.015 INFO ProgressMeter - NC_035782.1:15090046 258.7 1000390 3867.1 18:21:50.144 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:21:50.144 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:21:58.124 INFO ProgressMeter - NC_035782.1:15204234 258.9 1001260 3867.9 18:22:01.377 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:08.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:08.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:09.003 INFO ProgressMeter - NC_035782.1:15229875 259.0 1001450 3865.9 18:22:14.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:18.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:19.098 INFO ProgressMeter - NC_035782.1:15323950 259.2 1002040 3865.7 18:22:23.557 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:26.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:29.102 INFO ProgressMeter - NC_035782.1:15535474 259.4 1003490 3868.8 18:22:30.494 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:39.237 INFO ProgressMeter - NC_035782.1:15620635 259.5 1004150 3868.8 18:22:42.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:42.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:42.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:42.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:42.991 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:43.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:49.640 INFO ProgressMeter - NC_035782.1:15687015 259.7 1004640 3868.1 18:22:51.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:22:51.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:00.632 INFO ProgressMeter - NC_035782.1:15805919 259.9 1005500 3868.7 18:23:08.006 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:08.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:08.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:08.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:08.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:08.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:09.953 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:10.646 INFO ProgressMeter - NC_035782.1:15923511 260.1 1006430 3869.8 18:23:20.723 INFO ProgressMeter - NC_035782.1:15985360 260.2 1006900 3869.1 18:23:22.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:22.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:22.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:22.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:29.671 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:31.372 INFO ProgressMeter - NC_035782.1:16024973 260.4 1007170 3867.5 18:23:37.706 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:41.430 INFO ProgressMeter - NC_035782.1:16061043 260.6 1007420 3866.0 18:23:45.560 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:51.508 INFO ProgressMeter - NC_035782.1:16121202 260.8 1007900 3865.3 18:23:51.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:52.594 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:53.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:57.553 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:57.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:58.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:58.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:59.714 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:59.714 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:23:59.829 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:01.621 INFO ProgressMeter - NC_035782.1:16373253 260.9 1009460 3868.8 18:24:04.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:04.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:04.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:11.775 INFO ProgressMeter - NC_035782.1:16494522 261.1 1010200 3869.1 18:24:22.078 INFO ProgressMeter - NC_035782.1:16627327 261.3 1011170 3870.3 18:24:28.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:28.595 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:29.648 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:29.648 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:29.652 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:32.111 INFO ProgressMeter - NC_035782.1:16823480 261.4 1012450 3872.7 18:24:35.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:39.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:42.156 INFO ProgressMeter - NC_035782.1:16942162 261.6 1013310 3873.5 18:24:45.644 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:45.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:45.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:46.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:46.364 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:46.364 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:46.364 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:51.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:51.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:51.686 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:51.686 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:51.686 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:52.226 INFO ProgressMeter - NC_035782.1:17071730 261.8 1014170 3874.3 18:24:53.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:24:59.744 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:02.376 INFO ProgressMeter - NC_035782.1:17272562 261.9 1015560 3877.1 18:25:04.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:04.840 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:05.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:05.162 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:05.733 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:05.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:06.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:12.949 INFO ProgressMeter - NC_035782.1:17463978 262.1 1016940 3879.8 18:25:12.985 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:15.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:18.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:22.961 INFO ProgressMeter - NC_035782.1:17624778 262.3 1018110 3881.8 18:25:22.978 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:24.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:28.077 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:31.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:31.209 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:31.209 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:31.686 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:31.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:31.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:32.991 INFO ProgressMeter - NC_035782.1:17812416 262.4 1019440 3884.4 18:25:34.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:34.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:34.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:36.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:36.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:36.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:36.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:36.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:36.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:36.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:36.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:38.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:38.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:43.035 INFO ProgressMeter - NC_035782.1:17981849 262.6 1020680 3886.6 18:25:43.748 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:48.254 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:51.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:52.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:52.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:53.923 INFO ProgressMeter - NC_035782.1:18136248 262.8 1021750 3888.0 18:25:54.787 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:25:59.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:26:04.097 INFO ProgressMeter - NC_035782.1:18182596 263.0 1022080 3886.8 18:26:15.248 INFO ProgressMeter - NC_035782.1:18252596 263.1 1022610 3886.0 18:26:25.407 INFO ProgressMeter - NC_035782.1:18306282 263.3 1023030 3885.1 18:26:35.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:26:35.707 INFO ProgressMeter - NC_035782.1:18392446 263.5 1023700 3885.1 18:26:38.263 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:26:38.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:26:38.570 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:26:38.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:26:39.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:26:43.962 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:26:45.862 INFO ProgressMeter - NC_035782.1:18499313 263.7 1024510 3885.7 18:26:47.137 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:26:50.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:26:51.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:26:55.905 INFO ProgressMeter - NC_035782.1:18600907 263.8 1025220 3886.0 18:27:05.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:27:05.774 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:27:05.915 INFO ProgressMeter - NC_035782.1:18788993 264.0 1026530 3888.5 18:27:16.529 INFO ProgressMeter - NC_035782.1:18843518 264.2 1026920 3887.3 18:27:26.546 INFO ProgressMeter - NC_035782.1:18901684 264.3 1027380 3886.6 18:27:37.071 INFO ProgressMeter - NC_035782.1:18984302 264.5 1027940 3886.2 18:27:41.480 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:27:42.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:27:42.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:27:42.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:27:45.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:27:46.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:27:47.110 INFO ProgressMeter - NC_035782.1:19093390 264.7 1028760 3886.8 18:27:48.115 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:27:57.231 INFO ProgressMeter - NC_035782.1:19174386 264.8 1029420 3886.8 18:28:03.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:28:07.694 INFO ProgressMeter - NC_035782.1:19233459 265.0 1029830 3885.8 18:28:11.774 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:28:18.155 INFO ProgressMeter - NC_035782.1:19256448 265.2 1029990 3883.9 18:28:28.655 INFO ProgressMeter - NC_035782.1:19306955 265.4 1030390 3882.8 18:28:38.801 INFO ProgressMeter - NC_035782.1:19357021 265.5 1030770 3881.8 18:28:49.736 INFO ProgressMeter - NC_035782.1:19399606 265.7 1031070 3880.2 18:28:57.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:28:57.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:28:57.586 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:28:57.849 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:28:59.220 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:28:59.220 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:28:59.745 INFO ProgressMeter - NC_035782.1:19500914 265.9 1031750 3880.3 18:29:04.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:29:10.059 INFO ProgressMeter - NC_035782.1:19606136 266.1 1032510 3880.7 18:29:15.404 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:29:15.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:29:18.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:29:18.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:29:20.061 INFO ProgressMeter - NC_035782.1:19760678 266.2 1033640 3882.5 18:29:23.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:29:28.091 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:29:28.450 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:29:30.061 INFO ProgressMeter - NC_035782.1:20020911 266.4 1035150 3885.7 18:29:31.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:29:31.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:29:31.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:29:40.147 INFO ProgressMeter - NC_035782.1:20112052 266.6 1035800 3885.7 18:29:50.223 INFO ProgressMeter - NC_035782.1:20156296 266.7 1036120 3884.5 18:29:51.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:29:54.307 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:30:00.412 INFO ProgressMeter - NC_035782.1:20217099 266.9 1036550 3883.6 18:30:01.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:30:03.637 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:30:06.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:30:10.854 INFO ProgressMeter - NC_035782.1:20315971 267.1 1037150 3883.3 18:30:15.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:30:21.100 INFO ProgressMeter - NC_035782.1:20394749 267.2 1037670 3882.8 18:30:28.647 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:30:31.569 INFO ProgressMeter - NC_035782.1:20456338 267.4 1038140 3882.0 18:30:41.777 INFO ProgressMeter - NC_035782.1:20529048 267.6 1038660 3881.5 18:30:52.084 INFO ProgressMeter - NC_035782.1:20550394 267.8 1038800 3879.5 18:31:02.282 INFO ProgressMeter - NC_035782.1:20564923 267.9 1038910 3877.5 18:31:12.362 INFO ProgressMeter - NC_035782.1:20575508 268.1 1038990 3875.4 18:31:23.487 INFO ProgressMeter - NC_035782.1:20601559 268.3 1039180 3873.4 18:31:33.572 INFO ProgressMeter - NC_035782.1:20634799 268.5 1039430 3871.9 18:31:43.715 INFO ProgressMeter - NC_035782.1:20682500 268.6 1039840 3871.0 18:31:43.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:31:43.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:31:43.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:31:43.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:31:47.263 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:31:47.341 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:31:53.982 INFO ProgressMeter - NC_035782.1:20746255 268.8 1040320 3870.3 18:31:55.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:32:01.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:32:04.475 INFO ProgressMeter - NC_035782.1:20817417 269.0 1040750 3869.4 18:32:14.597 INFO ProgressMeter - NC_035782.1:20840829 269.1 1040930 3867.6 18:32:24.946 INFO ProgressMeter - NC_035782.1:20888777 269.3 1041320 3866.6 18:32:35.200 INFO ProgressMeter - NC_035782.1:20924426 269.5 1041610 3865.2 18:32:45.716 INFO ProgressMeter - NC_035782.1:20984632 269.7 1042050 3864.3 18:32:56.341 INFO ProgressMeter - NC_035782.1:21014479 269.8 1042270 3862.6 18:33:00.336 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:33:07.323 INFO ProgressMeter - NC_035782.1:21053185 270.0 1042570 3861.1 18:33:09.805 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:33:09.805 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:33:18.305 INFO ProgressMeter - NC_035782.1:21094523 270.2 1042840 3859.5 18:33:28.616 INFO ProgressMeter - NC_035782.1:21164647 270.4 1043430 3859.2 18:33:38.773 INFO ProgressMeter - NC_035782.1:21176885 270.5 1043510 3857.1 18:33:39.610 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:33:43.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:33:49.243 INFO ProgressMeter - NC_035782.1:21191386 270.7 1043620 3855.0 18:33:59.308 INFO ProgressMeter - NC_035782.1:21235988 270.9 1043990 3854.0 18:34:09.309 INFO ProgressMeter - NC_035782.1:21271979 271.1 1044280 3852.7 18:34:19.266 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:34:19.317 INFO ProgressMeter - NC_035782.1:21351554 271.2 1044840 3852.4 18:34:29.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:34:29.347 INFO ProgressMeter - NC_035782.1:21404561 271.4 1045250 3851.5 18:34:39.402 INFO ProgressMeter - NC_035782.1:21475801 271.6 1045790 3851.2 18:34:41.999 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:34:50.316 INFO ProgressMeter - NC_035782.1:21601306 271.7 1046520 3851.3 18:34:51.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:00.464 INFO ProgressMeter - NC_035782.1:21719620 271.9 1047210 3851.4 18:35:10.479 INFO ProgressMeter - NC_035782.1:21783375 272.1 1047720 3850.9 18:35:13.098 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:20.528 INFO ProgressMeter - NC_035782.1:21903054 272.2 1048630 3851.9 18:35:21.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:22.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:22.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:22.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:22.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:22.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:22.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:28.308 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:30.588 INFO ProgressMeter - NC_035782.1:22020397 272.4 1049500 3852.7 18:35:36.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:36.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:36.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:36.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:38.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:40.905 INFO ProgressMeter - NC_035782.1:22117055 272.6 1050230 3853.0 18:35:40.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:35:51.005 INFO ProgressMeter - NC_035782.1:22249425 272.7 1051220 3854.2 18:35:55.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:36:01.238 INFO ProgressMeter - NC_035782.1:22338244 272.9 1051870 3854.2 18:36:08.997 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:36:11.416 INFO ProgressMeter - NC_035782.1:22434267 273.1 1052590 3854.4 18:36:20.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:36:21.444 INFO ProgressMeter - NC_035782.1:22506438 273.3 1053140 3854.1 18:36:27.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:36:27.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:36:31.456 INFO ProgressMeter - NC_035782.1:22554972 273.4 1053480 3853.0 18:36:41.622 INFO ProgressMeter - NC_035782.1:22600079 273.6 1053810 3851.8 18:36:51.714 INFO ProgressMeter - NC_035782.1:22638817 273.8 1054100 3850.5 18:37:02.098 INFO ProgressMeter - NC_035782.1:22701591 273.9 1054600 3849.9 18:37:06.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:37:12.349 INFO ProgressMeter - NC_035782.1:22744676 274.1 1054930 3848.7 18:37:14.738 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:37:14.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:37:20.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:37:21.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:37:22.349 INFO ProgressMeter - NC_035782.1:22813640 274.3 1055380 3848.0 18:37:27.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:37:27.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:37:29.383 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:37:32.783 INFO ProgressMeter - NC_035782.1:22891404 274.4 1055930 3847.6 18:37:42.846 INFO ProgressMeter - NC_035782.1:22951153 274.6 1056280 3846.5 18:37:52.254 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:37:53.279 INFO ProgressMeter - NC_035782.1:23083821 274.8 1056950 3846.5 18:37:53.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:37:54.277 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:00.885 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:01.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:03.387 INFO ProgressMeter - NC_035782.1:23250550 275.0 1057900 3847.6 18:38:04.054 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:04.726 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:09.827 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:10.671 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:13.503 INFO ProgressMeter - NC_035782.1:23391531 275.1 1058830 3848.6 18:38:20.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:22.152 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:22.152 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:23.537 INFO ProgressMeter - NC_035782.1:23445196 275.3 1059230 3847.7 18:38:23.786 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:28.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:29.481 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:33.562 INFO ProgressMeter - NC_035782.1:23532114 275.5 1059900 3847.8 18:38:36.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:43.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:43.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:43.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:43.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:43.874 INFO ProgressMeter - NC_035782.1:23595883 275.6 1060400 3847.2 18:38:50.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:53.880 INFO ProgressMeter - NC_035782.1:23663422 275.8 1060930 3846.8 18:38:56.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:58.208 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:38:58.208 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:03.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:03.089 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:03.089 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:03.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:03.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:03.911 INFO ProgressMeter - NC_035782.1:23767637 276.0 1061720 3847.4 18:39:08.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:08.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:08.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:13.975 INFO ProgressMeter - NC_035782.1:23924979 276.1 1062720 3848.6 18:39:18.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:20.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:24.857 INFO ProgressMeter - NC_035782.1:24062037 276.3 1063640 3849.4 18:39:35.326 INFO ProgressMeter - NC_035782.1:24115045 276.5 1064060 3848.5 18:39:36.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:39.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:45.328 INFO ProgressMeter - NC_035782.1:24241019 276.7 1064860 3849.1 18:39:51.560 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:39:55.747 INFO ProgressMeter - NC_035782.1:24358889 276.8 1065640 3849.5 18:39:56.585 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:40:06.118 INFO ProgressMeter - NC_035782.1:24426570 277.0 1066150 3849.0 18:40:11.646 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:40:16.127 INFO ProgressMeter - NC_035782.1:24526815 277.2 1066930 3849.4 18:40:27.049 INFO ProgressMeter - NC_035782.1:24634319 277.3 1067740 3849.8 18:40:29.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:40:29.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:40:32.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:40:32.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:40:37.358 INFO ProgressMeter - NC_035782.1:24703847 277.5 1068240 3849.3 18:40:37.411 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:40:39.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:40:46.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:40:47.580 INFO ProgressMeter - NC_035782.1:24766364 277.7 1068700 3848.6 18:40:57.137 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:40:57.625 INFO ProgressMeter - NC_035782.1:24827468 277.9 1069130 3847.8 18:41:01.091 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:41:08.047 INFO ProgressMeter - NC_035782.1:24880362 278.0 1069520 3846.8 18:41:19.064 INFO ProgressMeter - NC_035782.1:24964585 278.2 1070050 3846.1 18:41:30.691 INFO ProgressMeter - NC_035782.1:25017389 278.4 1070450 3844.9 18:41:38.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:41:40.716 INFO ProgressMeter - NC_035782.1:25158368 278.6 1071410 3846.0 18:41:40.891 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:41:45.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:41:47.948 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:41:50.908 INFO ProgressMeter - NC_035782.1:25325543 278.7 1072480 3847.5 18:41:51.673 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:42:00.910 INFO ProgressMeter - NC_035782.1:25478618 278.9 1073450 3848.7 18:42:05.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:42:10.201 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:42:10.928 INFO ProgressMeter - NC_035782.1:25643211 279.1 1074490 3850.1 18:42:16.989 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:42:16.989 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:42:20.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:42:20.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:42:21.294 INFO ProgressMeter - NC_035782.1:25887362 279.3 1075990 3853.1 18:42:31.377 INFO ProgressMeter - NC_035782.1:26041087 279.4 1076990 3854.4 18:42:40.160 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:42:40.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:42:41.590 INFO ProgressMeter - NC_035782.1:26254197 279.6 1078440 3857.2 18:42:51.603 INFO ProgressMeter - NC_035782.1:26459618 279.8 1079790 3859.8 18:43:01.614 INFO ProgressMeter - NC_035782.1:26617247 279.9 1080810 3861.1 18:43:06.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:43:12.111 INFO ProgressMeter - NC_035782.1:26692695 280.1 1081290 3860.4 18:43:22.181 INFO ProgressMeter - NC_035782.1:26741640 280.3 1081650 3859.4 18:43:24.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:43:24.476 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:43:25.482 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:43:32.436 INFO ProgressMeter - NC_035782.1:26810693 280.4 1082130 3858.7 18:43:37.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:43:37.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:43:42.473 INFO ProgressMeter - NC_035782.1:26889911 280.6 1082740 3858.6 18:43:47.202 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:43:52.523 INFO ProgressMeter - NC_035782.1:26923862 280.8 1082970 3857.1 18:43:58.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:44:02.686 INFO ProgressMeter - NC_035782.1:26966152 280.9 1083260 3855.8 18:44:12.809 INFO ProgressMeter - NC_035782.1:27026371 281.1 1083730 3855.2 18:44:23.223 INFO ProgressMeter - NC_035782.1:27092903 281.3 1084190 3854.5 18:44:30.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:44:33.302 INFO ProgressMeter - NC_035782.1:27132606 281.5 1084500 3853.3 18:44:37.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:44:43.597 INFO ProgressMeter - NC_035782.1:27189724 281.6 1085000 3852.7 18:44:54.047 INFO ProgressMeter - NC_035782.1:27257892 281.8 1085560 3852.3 18:45:04.551 INFO ProgressMeter - NC_035782.1:27310417 282.0 1085950 3851.3 18:45:14.816 INFO ProgressMeter - NC_035782.1:27331302 282.1 1086110 3849.5 18:45:25.422 INFO ProgressMeter - NC_035782.1:27369015 282.3 1086370 3848.0 18:45:27.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:45:35.532 INFO ProgressMeter - NC_035782.1:27392975 282.5 1086560 3846.4 18:45:39.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:45:46.421 INFO ProgressMeter - NC_035782.1:27421349 282.7 1086770 3844.7 18:45:56.985 INFO ProgressMeter - NC_035782.1:27430650 282.8 1086830 3842.5 18:46:07.164 INFO ProgressMeter - NC_035782.1:27471258 283.0 1087110 3841.2 18:46:07.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:46:17.255 INFO ProgressMeter - NC_035782.1:27502954 283.2 1087350 3839.7 18:46:25.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:46:25.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:46:25.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:46:25.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:46:27.617 INFO ProgressMeter - NC_035782.1:27556010 283.4 1087750 3838.8 18:46:39.140 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:46:39.140 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:46:39.394 INFO ProgressMeter - NC_035782.1:27598405 283.6 1088010 3837.1 18:46:49.714 INFO ProgressMeter - NC_035782.1:27649883 283.7 1088370 3836.0 18:46:52.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:46:53.570 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:46:53.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:46:53.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:46:59.901 INFO ProgressMeter - NC_035782.1:27715802 283.9 1088860 3835.4 18:47:01.595 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:47:05.313 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:47:10.029 INFO ProgressMeter - NC_035782.1:27891389 284.1 1090020 3837.3 18:47:16.077 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:47:16.077 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:47:16.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:47:18.246 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:47:20.152 INFO ProgressMeter - NC_035782.1:28073176 284.2 1091190 3839.1 18:47:23.916 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:47:30.324 INFO ProgressMeter - NC_035782.1:28299103 284.4 1092690 3842.1 18:47:38.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:47:40.494 INFO ProgressMeter - NC_035782.1:28494285 284.6 1093960 3844.2 18:47:42.382 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:47:45.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:47:45.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:47:51.189 INFO ProgressMeter - NC_035782.1:28621192 284.7 1094830 3844.9 18:47:59.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:48:01.246 INFO ProgressMeter - NC_035782.1:28681866 284.9 1095300 3844.3 18:48:01.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:48:11.393 INFO ProgressMeter - NC_035782.1:28759531 285.1 1095890 3844.1 18:48:18.874 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:48:21.505 INFO ProgressMeter - NC_035782.1:28828465 285.3 1096410 3843.6 18:48:27.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:48:31.971 INFO ProgressMeter - NC_035782.1:28864371 285.4 1096680 3842.2 18:48:42.020 INFO ProgressMeter - NC_035782.1:28926715 285.6 1097180 3841.7 18:48:51.859 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:48:52.411 INFO ProgressMeter - NC_035782.1:28979072 285.8 1097590 3840.8 18:49:02.560 INFO ProgressMeter - NC_035782.1:29069410 285.9 1098360 3841.2 18:49:08.461 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:49:12.896 INFO ProgressMeter - NC_035782.1:29138843 286.1 1098900 3840.8 18:49:15.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:49:15.989 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:49:19.663 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:49:23.204 INFO ProgressMeter - NC_035782.1:29190600 286.3 1099300 3839.9 18:49:23.666 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:49:33.421 INFO ProgressMeter - NC_035782.1:29272386 286.5 1099860 3839.6 18:49:36.744 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:49:39.579 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:49:43.987 INFO ProgressMeter - NC_035782.1:29412105 286.6 1100870 3840.8 18:49:47.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:49:47.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:49:52.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:49:54.194 INFO ProgressMeter - NC_035782.1:29551749 286.8 1101820 3841.8 18:49:57.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:49:59.964 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:04.197 INFO ProgressMeter - NC_035782.1:29709753 287.0 1102990 3843.6 18:50:07.240 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:09.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:09.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:09.154 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:09.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:14.253 INFO ProgressMeter - NC_035782.1:29918297 287.1 1104520 3846.7 18:50:19.706 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:24.413 INFO ProgressMeter - NC_035782.1:30077393 287.3 1105640 3848.3 18:50:26.392 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:32.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:32.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:32.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:33.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:33.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:34.488 INFO ProgressMeter - NC_035782.1:30256134 287.5 1106910 3850.5 18:50:36.383 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:36.674 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:50:45.278 INFO ProgressMeter - NC_035782.1:30447022 287.7 1108120 3852.3 18:50:55.344 INFO ProgressMeter - NC_035782.1:30510993 287.8 1108580 3851.7 18:51:01.990 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:51:03.178 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:51:05.577 INFO ProgressMeter - NC_035782.1:30612730 288.0 1109350 3852.1 18:51:05.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:51:06.239 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:51:06.908 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:51:12.574 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:51:15.732 INFO ProgressMeter - NC_035782.1:30787967 288.2 1110690 3854.5 18:51:16.130 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:51:18.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:51:21.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:51:25.987 INFO ProgressMeter - NC_035782.1:30933299 288.3 1111820 3856.1 18:51:29.103 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:51:36.004 INFO ProgressMeter - NC_035782.1:30990898 288.5 1112260 3855.4 18:51:43.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:51:46.049 INFO ProgressMeter - NC_035782.1:31065174 288.7 1112800 3855.0 18:51:56.589 INFO ProgressMeter - NC_035782.1:31105505 288.8 1113110 3853.7 18:52:04.440 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:52:06.699 INFO ProgressMeter - NC_035782.1:31170215 289.0 1113610 3853.2 18:52:16.912 INFO ProgressMeter - NC_035782.1:31237932 289.2 1114120 3852.7 18:52:22.943 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:52:27.041 INFO ProgressMeter - NC_035782.1:31281748 289.3 1114440 3851.6 18:52:37.213 INFO ProgressMeter - NC_035782.1:31365335 289.5 1115070 3851.5 18:52:45.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:52:45.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:52:45.766 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:52:47.216 INFO ProgressMeter - NC_035782.1:31510589 289.7 1115990 3852.5 18:52:48.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:52:54.438 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:52:57.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:52:57.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:52:57.292 INFO ProgressMeter - NC_035782.1:31713034 289.9 1117410 3855.1 18:52:59.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:53:02.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:53:06.600 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:53:07.632 INFO ProgressMeter - NC_035782.1:31901349 290.0 1118580 3856.9 18:53:08.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:53:09.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:53:14.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:53:16.532 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:53:17.641 INFO ProgressMeter - NC_035782.1:32083509 290.2 1119940 3859.3 18:53:28.009 INFO ProgressMeter - NC_035782.1:32160639 290.4 1120480 3858.9 18:53:38.643 INFO ProgressMeter - NC_035782.1:32237898 290.5 1121100 3858.7 18:53:48.647 INFO ProgressMeter - NC_035782.1:32284055 290.7 1121470 3857.7 18:53:58.654 INFO ProgressMeter - NC_035782.1:32370394 290.9 1122210 3858.1 18:54:08.689 INFO ProgressMeter - NC_035782.1:32419601 291.0 1122620 3857.3 18:54:18.891 INFO ProgressMeter - NC_035782.1:32467644 291.2 1122980 3856.2 18:54:28.558 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:54:28.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:54:28.984 INFO ProgressMeter - NC_035782.1:32546363 291.4 1123570 3856.0 18:54:38.994 INFO ProgressMeter - NC_035782.1:32631604 291.5 1124240 3856.1 18:54:49.002 INFO ProgressMeter - NC_035782.1:32722616 291.7 1124920 3856.3 18:54:52.175 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:54:59.346 INFO ProgressMeter - NC_035782.1:32782553 291.9 1125380 3855.6 18:55:09.892 INFO ProgressMeter - NC_035782.1:32834026 292.1 1125790 3854.6 18:55:10.449 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:55:20.176 INFO ProgressMeter - NC_035782.1:32905361 292.2 1126350 3854.3 18:55:30.184 INFO ProgressMeter - NC_035782.1:32971947 292.4 1126910 3854.0 18:55:40.186 INFO ProgressMeter - NC_035782.1:33034064 292.6 1127410 3853.5 18:55:50.551 INFO ProgressMeter - NC_035782.1:33098188 292.7 1127940 3853.1 18:55:55.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:00.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:00.421 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:00.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:00.606 INFO ProgressMeter - NC_035782.1:33248809 292.9 1129130 3854.9 18:56:00.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:00.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:00.940 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:07.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:10.699 INFO ProgressMeter - NC_035782.1:33417851 293.1 1130400 3857.0 18:56:20.994 INFO ProgressMeter - NC_035782.1:33515315 293.2 1131130 3857.3 18:56:31.255 INFO ProgressMeter - NC_035782.1:33688494 293.4 1132560 3859.9 18:56:38.500 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:39.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:39.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:39.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:41.438 INFO ProgressMeter - NC_035782.1:33955629 293.6 1134560 3864.5 18:56:41.874 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:46.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:56:51.457 INFO ProgressMeter - NC_035782.1:34101646 293.8 1135650 3866.0 18:57:01.506 INFO ProgressMeter - NC_035782.1:34325749 293.9 1137400 3869.8 18:57:05.774 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:57:11.517 INFO ProgressMeter - NC_035782.1:34555372 294.1 1139140 3873.5 18:57:12.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:57:18.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:57:18.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:57:21.524 INFO ProgressMeter - NC_035782.1:34803373 294.3 1140990 3877.6 18:57:27.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:57:31.538 INFO ProgressMeter - NC_035782.1:34998040 294.4 1142480 3880.4 18:57:32.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:57:35.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:57:41.617 INFO ProgressMeter - NC_035782.1:35251292 294.6 1144470 3885.0 18:57:51.619 INFO ProgressMeter - NC_035782.1:35360794 294.8 1145320 3885.7 18:58:01.628 INFO ProgressMeter - NC_035782.1:35492068 294.9 1146410 3887.2 18:58:11.646 INFO ProgressMeter - NC_035782.1:35676744 295.1 1147890 3890.0 18:58:21.679 INFO ProgressMeter - NC_035782.1:35790409 295.3 1148820 3890.9 18:58:32.128 INFO ProgressMeter - NC_035782.1:35873370 295.4 1149460 3890.8 18:58:42.286 INFO ProgressMeter - NC_035782.1:35927617 295.6 1149890 3890.0 18:58:44.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:58:52.291 INFO ProgressMeter - NC_035782.1:36029238 295.8 1150650 3890.4 18:58:52.890 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:58:57.298 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:02.382 INFO ProgressMeter - NC_035782.1:36244620 295.9 1152100 3893.1 18:59:03.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:09.108 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:09.108 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:12.384 INFO ProgressMeter - NC_035782.1:36424040 296.1 1153260 3894.8 18:59:13.090 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:20.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:20.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:21.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:22.385 INFO ProgressMeter - NC_035782.1:36607221 296.3 1154450 3896.6 18:59:32.390 INFO ProgressMeter - NC_035782.1:36820303 296.4 1155980 3899.6 18:59:33.536 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:36.081 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:40.648 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:42.497 INFO ProgressMeter - NC_035782.1:37008371 296.6 1157290 3901.8 18:59:49.182 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:49.182 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:52.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:52.516 INFO ProgressMeter - NC_035782.1:37160864 296.8 1158340 3903.1 18:59:55.519 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:57.669 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:57.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 18:59:57.727 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:01.259 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:01.765 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:02.658 INFO ProgressMeter - NC_035782.1:37344219 296.9 1159590 3905.1 19:00:07.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:07.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:09.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:09.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:09.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:13.375 INFO ProgressMeter - NC_035782.1:37538595 297.1 1160890 3907.2 19:00:17.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:17.541 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:18.121 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:18.265 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:23.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:23.375 INFO ProgressMeter - NC_035782.1:37848180 297.3 1162880 3911.7 19:00:26.389 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:33.605 INFO ProgressMeter - NC_035782.1:37970604 297.5 1163760 3912.4 19:00:43.848 INFO ProgressMeter - NC_035782.1:38015493 297.6 1164100 3911.3 19:00:54.838 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:00:55.062 INFO ProgressMeter - NC_035782.1:38087012 297.8 1164640 3910.6 19:01:05.416 INFO ProgressMeter - NC_035782.1:38130834 298.0 1164940 3909.4 19:01:07.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:10.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:10.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:10.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:10.550 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:10.550 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:10.586 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:12.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:12.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:12.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:15.607 INFO ProgressMeter - NC_035782.1:38266127 298.2 1165910 3910.4 19:01:25.950 INFO ProgressMeter - NC_035782.1:38472822 298.3 1167330 3912.9 19:01:36.159 INFO ProgressMeter - NC_035782.1:38695884 298.5 1168760 3915.5 19:01:37.600 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:46.190 INFO ProgressMeter - NC_035782.1:38903273 298.7 1170120 3917.8 19:01:49.078 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:50.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:56.434 INFO ProgressMeter - NC_035782.1:39039863 298.8 1171090 3918.8 19:01:57.785 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:57.881 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:57.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:57.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:01:57.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:05.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:06.454 INFO ProgressMeter - NC_035782.1:39337316 299.0 1173010 3923.1 19:02:12.314 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:12.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:14.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:14.636 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:16.458 INFO ProgressMeter - NC_035782.1:39534578 299.2 1174470 3925.8 19:02:26.787 INFO ProgressMeter - NC_035782.1:39676566 299.3 1175620 3927.3 19:02:37.190 INFO ProgressMeter - NC_035782.1:39772186 299.5 1176300 3927.3 19:02:38.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:41.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:44.755 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:44.755 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:47.195 INFO ProgressMeter - NC_035782.1:40013058 299.7 1177880 3930.4 19:02:52.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:52.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:52.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:52.315 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:54.674 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:55.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:02:57.394 INFO ProgressMeter - NC_035782.1:40210630 299.9 1179370 3933.2 19:02:59.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:03:01.266 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:03:05.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:03:05.400 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:03:07.560 INFO ProgressMeter - NC_035782.1:40384211 300.0 1180630 3935.2 19:03:17.868 INFO ProgressMeter - NC_035782.1:40440382 300.2 1181090 3934.4 19:03:21.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:03:27.922 INFO ProgressMeter - NC_035782.1:40514116 300.4 1181670 3934.2 19:03:37.930 INFO ProgressMeter - NC_035782.1:40558640 300.5 1182010 3933.1 19:03:43.488 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:03:43.488 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:03:48.191 INFO ProgressMeter - NC_035782.1:40627227 300.7 1182540 3932.6 19:03:52.532 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:03:52.533 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:03:57.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:03:58.655 INFO ProgressMeter - NC_035782.1:40691277 300.9 1183000 3931.9 19:04:03.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:04:03.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:04:05.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:04:08.898 INFO ProgressMeter - NC_035782.1:40756649 301.0 1183500 3931.3 19:04:16.216 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:04:19.025 INFO ProgressMeter - NC_035782.1:40809606 301.2 1183890 3930.4 19:04:24.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:04:29.210 INFO ProgressMeter - NC_035782.1:40865368 301.4 1184290 3929.5 19:04:35.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:04:37.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:04:39.413 INFO ProgressMeter - NC_035782.1:40917952 301.6 1184670 3928.6 19:04:40.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:04:40.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:04:40.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:04:45.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:04:49.618 INFO ProgressMeter - NC_035782.1:41004902 301.7 1185260 3928.3 19:04:59.873 INFO ProgressMeter - NC_035782.1:41056511 301.9 1185700 3927.5 19:05:04.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:05:10.083 INFO ProgressMeter - NC_035782.1:41121578 302.1 1186160 3926.9 19:05:20.469 INFO ProgressMeter - NC_035782.1:41152666 302.2 1186420 3925.5 19:05:31.037 INFO ProgressMeter - NC_035782.1:41180502 302.4 1186640 3923.9 19:05:38.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:05:38.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:05:41.130 INFO ProgressMeter - NC_035782.1:41283338 302.6 1187250 3923.7 19:05:49.015 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:05:51.534 INFO ProgressMeter - NC_035782.1:41312126 302.8 1187490 3922.3 19:06:02.052 INFO ProgressMeter - NC_035782.1:41353243 302.9 1187830 3921.1 19:06:12.971 INFO ProgressMeter - NC_035782.1:41396298 303.1 1188170 3919.9 19:06:13.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:06:23.127 INFO ProgressMeter - NC_035782.1:41434922 303.3 1188480 3918.7 19:06:27.092 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:06:27.092 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:06:32.146 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:06:33.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:06:33.163 INFO ProgressMeter - NC_035782.1:41501371 303.4 1188950 3918.1 19:06:35.364 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:06:35.540 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:06:35.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:06:37.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:06:41.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:06:43.715 INFO ProgressMeter - NC_035782.1:41608330 303.6 1189700 3918.3 19:06:53.774 INFO ProgressMeter - NC_035782.1:41677894 303.8 1190180 3917.7 19:07:04.222 INFO ProgressMeter - NC_035782.1:41788152 304.0 1190860 3917.7 19:07:08.541 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:07:14.328 INFO ProgressMeter - NC_035782.1:41832894 304.1 1191190 3916.7 19:07:17.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:07:17.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:07:17.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:07:19.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:07:25.232 INFO ProgressMeter - NC_035782.1:41893800 304.3 1191680 3915.9 19:07:35.262 INFO ProgressMeter - NC_035782.1:41972092 304.5 1192340 3915.9 19:07:43.657 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:07:45.711 INFO ProgressMeter - NC_035782.1:42064520 304.7 1193050 3916.0 19:07:55.724 INFO ProgressMeter - NC_035782.1:42123547 304.8 1193480 3915.3 19:08:03.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:08:05.813 INFO ProgressMeter - NC_035782.1:42189000 305.0 1194020 3914.9 19:08:15.867 INFO ProgressMeter - NC_035782.1:42230378 305.2 1194350 3913.8 19:08:26.077 INFO ProgressMeter - NC_035782.1:42314573 305.3 1194900 3913.5 19:08:36.355 INFO ProgressMeter - NC_035782.1:42368594 305.5 1195300 3912.6 19:08:46.373 INFO ProgressMeter - NC_035782.1:42418364 305.7 1195630 3911.5 19:08:56.724 INFO ProgressMeter - NC_035782.1:42475932 305.8 1195960 3910.4 19:08:58.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:09:06.981 INFO ProgressMeter - NC_035782.1:42544078 306.0 1196430 3909.7 19:09:07.309 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:09:07.309 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:09:11.671 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:09:15.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:09:16.991 INFO ProgressMeter - NC_035782.1:42694476 306.2 1197320 3910.5 19:09:23.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:09:23.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:09:27.228 INFO ProgressMeter - NC_035782.1:42835880 306.3 1198220 3911.3 19:09:37.237 INFO ProgressMeter - NC_035782.1:42935001 306.5 1198890 3911.3 19:09:39.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:09:39.863 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:09:44.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:09:47.617 INFO ProgressMeter - NC_035782.1:43079021 306.7 1199920 3912.5 19:09:53.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:09:57.641 INFO ProgressMeter - NC_035782.1:43343104 306.9 1201420 3915.3 19:10:02.141 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:07.789 INFO ProgressMeter - NC_035782.1:43528049 307.0 1202580 3916.9 19:10:14.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:17.789 INFO ProgressMeter - NC_035782.1:43754060 307.2 1204020 3919.4 19:10:20.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:27.792 INFO ProgressMeter - NC_035782.1:43952761 307.4 1205280 3921.4 19:10:28.871 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:34.848 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:37.803 INFO ProgressMeter - NC_035782.1:44089221 307.5 1206190 3922.2 19:10:37.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:44.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:47.617 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:47.618 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:47.618 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:47.618 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:47.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:47.851 INFO ProgressMeter - NC_035782.1:44256010 307.7 1207250 3923.6 19:10:49.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:54.857 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:55.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:58.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:58.073 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:10:58.090 INFO ProgressMeter - NC_035782.1:44546613 307.9 1208940 3926.9 19:11:06.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:11:08.153 INFO ProgressMeter - NC_035782.1:44710001 308.0 1210110 3928.5 19:11:10.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:11:11.575 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:11:11.575 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:11:11.575 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:11:12.980 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:11:18.234 INFO ProgressMeter - NC_035782.1:44908100 308.2 1211470 3930.8 19:11:20.791 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:11:20.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:11:28.849 INFO ProgressMeter - NC_035782.1:45101086 308.4 1212620 3932.3 19:11:38.998 INFO ProgressMeter - NC_035782.1:45159177 308.5 1213050 3931.5 19:11:49.205 INFO ProgressMeter - NC_035782.1:45211045 308.7 1213460 3930.7 19:11:59.214 INFO ProgressMeter - NC_035782.1:45253262 308.9 1213770 3929.6 19:12:00.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:00.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:02.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:02.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:02.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:02.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:02.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:02.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:02.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:02.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:04.450 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:04.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:08.798 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:09.294 INFO ProgressMeter - NC_035782.1:45488890 309.1 1215370 3932.6 19:12:09.364 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:10.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:19.478 INFO ProgressMeter - NC_035782.1:45645437 309.2 1216420 3933.8 19:12:25.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:29.581 INFO ProgressMeter - NC_035782.1:45721385 309.4 1216980 3933.5 19:12:39.769 INFO ProgressMeter - NC_035782.1:45778931 309.6 1217370 3932.6 19:12:43.588 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:44.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:50.085 INFO ProgressMeter - NC_035782.1:45838527 309.7 1217870 3932.0 19:12:58.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:58.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:12:58.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:13:00.113 INFO ProgressMeter - NC_035782.1:45924466 309.9 1218540 3932.1 19:13:10.384 INFO ProgressMeter - NC_035782.1:45989715 310.1 1219050 3931.5 19:13:11.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:13:17.385 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:13:21.243 INFO ProgressMeter - NC_035782.1:46048116 310.2 1219490 3930.7 19:13:31.596 INFO ProgressMeter - NC_035782.1:46125779 310.4 1220090 3930.4 19:13:41.876 INFO ProgressMeter - NC_035782.1:46169235 310.6 1220440 3929.4 19:13:51.969 INFO ProgressMeter - NC_035782.1:46242183 310.8 1221030 3929.2 19:14:02.077 INFO ProgressMeter - NC_035782.1:46270366 310.9 1221250 3927.7 19:14:07.275 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:14:12.310 INFO ProgressMeter - NC_035782.1:46313228 311.1 1221570 3926.6 19:14:22.964 INFO ProgressMeter - NC_035782.1:46362084 311.3 1221940 3925.6 19:14:23.542 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:14:27.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:14:27.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:14:27.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:14:27.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:14:27.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:14:27.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:14:27.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:14:27.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:14:27.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:14:33.209 INFO ProgressMeter - NC_035782.1:46475758 311.4 1222620 3925.6 19:14:43.588 INFO ProgressMeter - NC_035782.1:46560800 311.6 1223130 3925.0 19:14:51.232 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:14:53.588 INFO ProgressMeter - NC_035782.1:46616630 311.8 1223490 3924.1 19:15:03.795 INFO ProgressMeter - NC_035782.1:46669392 312.0 1223930 3923.4 19:15:14.045 INFO ProgressMeter - NC_035782.1:46732575 312.1 1224460 3922.9 19:15:24.296 INFO ProgressMeter - NC_035782.1:46792759 312.3 1224950 3922.3 19:15:34.415 INFO ProgressMeter - NC_035782.1:46844311 312.5 1225370 3921.6 19:15:38.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:15:44.070 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:15:44.681 INFO ProgressMeter - NC_035782.1:46911730 312.6 1225930 3921.2 19:15:54.699 INFO ProgressMeter - NC_035782.1:47003735 312.8 1226550 3921.1 19:16:04.903 INFO ProgressMeter - NC_035782.1:47117999 313.0 1227430 3921.8 19:16:16.292 INFO ProgressMeter - NC_035782.1:47144845 313.2 1227610 3920.0 19:16:21.954 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:16:26.358 INFO ProgressMeter - NC_035782.1:47191361 313.3 1227970 3919.0 19:16:33.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:16:33.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:16:36.536 INFO ProgressMeter - NC_035782.1:47281989 313.5 1228680 3919.2 19:16:42.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:16:46.976 INFO ProgressMeter - NC_035782.1:47358760 313.7 1229340 3919.1 19:16:57.264 INFO ProgressMeter - NC_035782.1:47433337 313.8 1229940 3918.9 19:17:08.152 INFO ProgressMeter - NC_035782.1:47476136 314.0 1230300 3917.8 19:17:18.538 INFO ProgressMeter - NC_035782.1:47538816 314.2 1230760 3917.1 19:17:28.580 INFO ProgressMeter - NC_035782.1:47599247 314.4 1231270 3916.6 19:17:33.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:17:33.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:17:38.837 INFO ProgressMeter - NC_035782.1:47676143 314.5 1231900 3916.5 19:17:49.015 INFO ProgressMeter - NC_035782.1:47778509 314.7 1232770 3917.1 19:17:59.045 INFO ProgressMeter - NC_035782.1:47878367 314.9 1233490 3917.3 19:18:01.763 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:18:09.518 INFO ProgressMeter - NC_035782.1:47943589 315.1 1233990 3916.8 19:18:13.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:18:13.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:18:13.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:18:19.890 INFO ProgressMeter - NC_035782.1:48017203 315.2 1234570 3916.4 19:18:30.039 INFO ProgressMeter - NC_035782.1:48070816 315.4 1235000 3915.7 19:18:40.170 INFO ProgressMeter - NC_035782.1:48162407 315.6 1235740 3916.0 19:18:51.078 INFO ProgressMeter - NC_035782.1:48246255 315.7 1236400 3915.8 19:19:01.196 INFO ProgressMeter - NC_035782.1:48300413 315.9 1236810 3915.0 19:19:11.199 INFO ProgressMeter - NC_035782.1:48364692 316.1 1237290 3914.5 19:19:21.716 INFO ProgressMeter - NC_035782.1:48442068 316.3 1237910 3914.2 19:19:22.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:19:28.333 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:19:31.868 INFO ProgressMeter - NC_035782.1:48527529 316.4 1238560 3914.2 19:19:41.913 INFO ProgressMeter - NC_035782.1:48617693 316.6 1239280 3914.4 19:19:51.993 INFO ProgressMeter - NC_035782.1:48656856 316.8 1239570 3913.3 19:19:55.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:20:02.385 INFO ProgressMeter - NC_035782.1:48702963 316.9 1239940 3912.3 19:20:05.553 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:20:05.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:20:05.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:20:12.509 INFO ProgressMeter - NC_035782.1:48832797 317.1 1240950 3913.4 19:20:22.528 INFO ProgressMeter - NC_035782.1:48886111 317.3 1241350 3912.6 19:20:22.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:20:32.622 INFO ProgressMeter - NC_035782.1:49000482 317.4 1242260 3913.4 19:20:42.664 INFO ProgressMeter - NC_035782.1:49048645 317.6 1242650 3912.5 19:20:51.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:20:51.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:20:52.890 INFO ProgressMeter - NC_035782.1:49113148 317.8 1243150 3912.0 19:21:04.047 INFO ProgressMeter - NC_035782.1:49175474 318.0 1243650 3911.3 19:21:09.575 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:21:14.129 INFO ProgressMeter - NC_035782.1:49265162 318.1 1244340 3911.4 19:21:19.663 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:21:21.558 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:21:24.282 INFO ProgressMeter - NC_035782.1:49314918 318.3 1244740 3910.6 19:21:31.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:21:34.484 INFO ProgressMeter - NC_035782.1:49384280 318.5 1245260 3910.1 19:21:45.993 INFO ProgressMeter - NC_035782.1:49441058 318.7 1245720 3909.2 19:21:56.571 INFO ProgressMeter - NC_035782.1:49510579 318.8 1246290 3908.8 19:22:07.542 INFO ProgressMeter - NC_035782.1:49553464 319.0 1246590 3907.5 19:22:17.647 INFO ProgressMeter - NC_035782.1:49641995 319.2 1247260 3907.6 19:22:25.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:22:25.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:22:28.600 INFO ProgressMeter - NC_035782.1:49681788 319.4 1247540 3906.2 19:22:38.954 INFO ProgressMeter - NC_035782.1:49721823 319.5 1247850 3905.1 19:22:48.982 INFO ProgressMeter - NC_035782.1:49773415 319.7 1248300 3904.5 19:22:59.082 INFO ProgressMeter - NC_035782.1:49874088 319.9 1248990 3904.6 19:23:09.110 INFO ProgressMeter - NC_035782.1:49933448 320.0 1249430 3903.9 19:23:14.535 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:23:19.679 INFO ProgressMeter - NC_035782.1:49973885 320.2 1249740 3902.7 19:23:21.469 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:23:22.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:23:30.113 INFO ProgressMeter - NC_035782.1:50038183 320.4 1250270 3902.2 19:23:40.950 INFO ProgressMeter - NC_035782.1:50103106 320.6 1250800 3901.7 19:23:49.710 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:23:49.710 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:23:49.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:23:49.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:23:49.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:23:49.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:23:49.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:23:49.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:23:51.568 INFO ProgressMeter - NC_035782.1:50137111 320.8 1251050 3900.3 19:24:01.659 INFO ProgressMeter - NC_035782.1:50178757 320.9 1251390 3899.3 19:24:11.447 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:24:12.144 INFO ProgressMeter - NC_035782.1:50232503 321.1 1251800 3898.5 19:24:22.145 INFO ProgressMeter - NC_035782.1:50292957 321.3 1252250 3897.9 19:24:32.410 INFO ProgressMeter - NC_035782.1:50336385 321.4 1252600 3896.9 19:24:42.993 INFO ProgressMeter - NC_035782.1:50383108 321.6 1252960 3895.9 19:24:53.442 INFO ProgressMeter - NC_035782.1:50417172 321.8 1253240 3894.6 19:25:03.862 INFO ProgressMeter - NC_035782.1:50479526 322.0 1253750 3894.1 19:25:14.281 INFO ProgressMeter - NC_035782.1:50526144 322.1 1254140 3893.2 19:25:24.293 INFO ProgressMeter - NC_035782.1:50570034 322.3 1254480 3892.3 19:25:31.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:25:34.588 INFO ProgressMeter - NC_035782.1:50619584 322.5 1254880 3891.4 19:25:43.398 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:25:45.020 INFO ProgressMeter - NC_035782.1:50692807 322.6 1255420 3891.0 19:25:47.902 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:25:49.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:25:49.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:25:55.052 INFO ProgressMeter - NC_035782.1:50758423 322.8 1255910 3890.5 19:26:05.431 INFO ProgressMeter - NC_035782.1:50807464 323.0 1256320 3889.7 19:26:15.440 INFO ProgressMeter - NC_035782.1:50874759 323.2 1256830 3889.3 19:26:25.503 INFO ProgressMeter - NC_035782.1:50948690 323.3 1257410 3889.0 19:26:28.696 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:26:35.573 INFO ProgressMeter - NC_035782.1:51014163 323.5 1257930 3888.6 19:26:45.709 INFO ProgressMeter - NC_035782.1:51064008 323.7 1258330 3887.8 19:26:56.371 INFO ProgressMeter - NC_035782.1:51135141 323.8 1258860 3887.3 19:27:03.507 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:27:04.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:27:06.608 INFO ProgressMeter - NC_035782.1:51185531 324.0 1259210 3886.4 19:27:17.173 INFO ProgressMeter - NC_035782.1:51225681 324.2 1259520 3885.2 19:27:27.312 INFO ProgressMeter - NC_035782.1:51265728 324.4 1259840 3884.2 19:27:37.756 INFO ProgressMeter - NC_035782.1:51330119 324.5 1260220 3883.3 19:27:38.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:27:47.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:27:47.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:27:47.277 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:27:47.831 INFO ProgressMeter - NC_035782.1:51401673 324.7 1260730 3882.8 19:27:57.999 INFO ProgressMeter - NC_035782.1:51499460 324.9 1261510 3883.2 19:28:01.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:28:08.290 INFO ProgressMeter - NC_035782.1:51569954 325.0 1262030 3882.8 19:28:18.461 INFO ProgressMeter - NC_035782.1:51600448 325.2 1262260 3881.4 19:28:28.989 INFO ProgressMeter - NC_035782.1:51635049 325.4 1262520 3880.2 19:28:39.092 INFO ProgressMeter - NC_035782.1:51678580 325.5 1262860 3879.2 19:28:49.231 INFO ProgressMeter - NC_035782.1:51777848 325.7 1263670 3879.7 19:29:00.272 INFO ProgressMeter - NC_035782.1:51859009 325.9 1264280 3879.3 19:29:10.807 INFO ProgressMeter - NC_035782.1:51932603 326.1 1264870 3879.1 19:29:21.186 INFO ProgressMeter - NC_035782.1:51995536 326.2 1265350 3878.5 19:29:31.198 INFO ProgressMeter - NC_035782.1:52112336 326.4 1266280 3879.3 19:29:41.483 INFO ProgressMeter - NC_035782.1:52201890 326.6 1266990 3879.5 19:29:51.563 INFO ProgressMeter - NC_035782.1:52305242 326.8 1267820 3880.0 19:30:01.770 INFO ProgressMeter - NC_035782.1:52358749 326.9 1268250 3879.3 19:30:11.951 INFO ProgressMeter - NC_035782.1:52406110 327.1 1268630 3878.5 19:30:22.695 INFO ProgressMeter - NC_035782.1:52448308 327.3 1268980 3877.4 19:30:32.907 INFO ProgressMeter - NC_035782.1:52491215 327.4 1269310 3876.4 19:30:43.093 INFO ProgressMeter - NC_035782.1:52578782 327.6 1269990 3876.5 19:30:53.204 INFO ProgressMeter - NC_035782.1:52641386 327.8 1270480 3876.0 19:30:57.752 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:30:59.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:31:03.216 INFO ProgressMeter - NC_035782.1:52701041 327.9 1270940 3875.4 19:31:13.779 INFO ProgressMeter - NC_035782.1:52755481 328.1 1271370 3874.6 19:31:24.060 INFO ProgressMeter - NC_035782.1:52797916 328.3 1271700 3873.6 19:31:30.871 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:31:34.304 INFO ProgressMeter - NC_035782.1:52838440 328.5 1272020 3872.6 19:31:44.531 INFO ProgressMeter - NC_035782.1:52881461 328.6 1272370 3871.6 19:31:55.372 INFO ProgressMeter - NC_035782.1:52954961 328.8 1272900 3871.1 19:32:05.390 INFO ProgressMeter - NC_035782.1:52987459 329.0 1273150 3869.9 19:32:15.564 INFO ProgressMeter - NC_035782.1:53062690 329.2 1273770 3869.8 19:32:20.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:32:20.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:32:26.422 INFO ProgressMeter - NC_035782.1:53126038 329.3 1274270 3869.2 19:32:36.820 INFO ProgressMeter - NC_035782.1:53144159 329.5 1274410 3867.6 19:32:46.134 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:32:46.960 INFO ProgressMeter - NC_035782.1:53189801 329.7 1274750 3866.6 19:32:57.288 INFO ProgressMeter - NC_035782.1:53247483 329.9 1275200 3866.0 19:33:07.341 INFO ProgressMeter - NC_035782.1:53301604 330.0 1275640 3865.4 19:33:17.494 INFO ProgressMeter - NC_035782.1:53411577 330.2 1276540 3866.1 19:33:27.514 INFO ProgressMeter - NC_035782.1:53460559 330.4 1276940 3865.4 19:33:30.568 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:33:37.797 INFO ProgressMeter - NC_035782.1:53513441 330.5 1277370 3864.7 19:33:39.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:33:39.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:33:47.939 INFO ProgressMeter - NC_035782.1:53555676 330.7 1277660 3863.6 19:33:58.255 INFO ProgressMeter - NC_035782.1:53615463 330.9 1278160 3863.1 19:34:08.633 INFO ProgressMeter - NC_035782.1:53697567 331.0 1278830 3863.1 19:34:18.764 INFO ProgressMeter - NC_035782.1:53767221 331.2 1279370 3862.7 19:34:28.886 INFO ProgressMeter - NC_035782.1:53847244 331.4 1280030 3862.8 19:34:30.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:34:39.225 INFO ProgressMeter - NC_035782.1:53943831 331.5 1280800 3863.1 19:34:47.212 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:34:49.247 INFO ProgressMeter - NC_035782.1:53981606 331.7 1281110 3862.1 19:34:58.468 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:34:58.468 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:34:58.468 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:34:59.371 INFO ProgressMeter - NC_035782.1:54061591 331.9 1281760 3862.1 19:34:59.390 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:35:09.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:35:09.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:35:09.530 INFO ProgressMeter - NC_035782.1:54105453 332.1 1282090 3861.1 19:35:19.638 INFO ProgressMeter - NC_035782.1:54155579 332.2 1282510 3860.4 19:35:27.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:35:29.726 INFO ProgressMeter - NC_035782.1:54231348 332.4 1283110 3860.2 19:35:31.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:35:31.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:35:31.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:35:33.520 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:35:39.750 INFO ProgressMeter - NC_035782.1:54284003 332.6 1283570 3859.7 19:35:50.903 INFO ProgressMeter - NC_035782.1:54356027 332.7 1284170 3859.3 19:35:58.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:36:01.066 INFO ProgressMeter - NC_035782.1:54419901 332.9 1284690 3858.9 19:36:03.967 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:36:11.160 INFO ProgressMeter - NC_035782.1:54468641 333.1 1285040 3858.0 19:36:21.571 INFO ProgressMeter - NC_035782.1:54524569 333.3 1285510 3857.4 19:36:31.694 INFO ProgressMeter - NC_035782.1:54581080 333.4 1285940 3856.8 19:36:34.201 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:36:42.289 INFO ProgressMeter - NC_035782.1:54668549 333.6 1286560 3856.6 19:36:44.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:36:52.617 INFO ProgressMeter - NC_035782.1:54724359 333.8 1286970 3855.8 19:37:02.666 INFO ProgressMeter - NC_035782.1:54834446 333.9 1287720 3856.1 19:37:11.804 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:37:12.890 INFO ProgressMeter - NC_035782.1:54894367 334.1 1288190 3855.6 19:37:23.566 INFO ProgressMeter - NC_035782.1:54928946 334.3 1288440 3854.3 19:37:26.947 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:37:33.948 INFO ProgressMeter - NC_035782.1:54968019 334.5 1288750 3853.2 19:37:44.161 INFO ProgressMeter - NC_035782.1:55018422 334.6 1289140 3852.4 19:37:54.314 INFO ProgressMeter - NC_035782.1:55070101 334.8 1289550 3851.7 19:38:04.766 INFO ProgressMeter - NC_035782.1:55108125 335.0 1289820 3850.5 19:38:14.839 INFO ProgressMeter - NC_035782.1:55133005 335.1 1290010 3849.1 19:38:20.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:38:20.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:38:25.278 INFO ProgressMeter - NC_035782.1:55176744 335.3 1290370 3848.2 19:38:29.994 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:38:30.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:38:30.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:38:35.379 INFO ProgressMeter - NC_035782.1:55222913 335.5 1290700 3847.3 19:38:45.787 INFO ProgressMeter - NC_035782.1:55268282 335.7 1291050 3846.3 19:38:55.924 INFO ProgressMeter - NC_035782.1:55313069 335.8 1291420 3845.5 19:39:07.031 INFO ProgressMeter - NC_035782.1:55351406 336.0 1291710 3844.2 19:39:17.225 INFO ProgressMeter - NC_035782.1:55404420 336.2 1292120 3843.5 19:39:27.383 INFO ProgressMeter - NC_035782.1:55473948 336.4 1292690 3843.3 19:39:29.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:39:37.529 INFO ProgressMeter - NC_035782.1:55542914 336.5 1293220 3842.9 19:39:40.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:39:48.171 INFO ProgressMeter - NC_035782.1:55592156 336.7 1293630 3842.1 19:39:54.881 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:39:54.881 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:39:58.176 INFO ProgressMeter - NC_035782.1:55677784 336.9 1294220 3842.0 19:40:08.822 INFO ProgressMeter - NC_035782.1:55732592 337.0 1294670 3841.3 19:40:17.823 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:40:17.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:40:19.106 INFO ProgressMeter - NC_035782.1:55777729 337.2 1295030 3840.4 19:40:29.149 INFO ProgressMeter - NC_035782.1:55838275 337.4 1295510 3839.9 19:40:35.421 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:40:35.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:40:35.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:40:39.166 INFO ProgressMeter - NC_035782.1:55910025 337.5 1296100 3839.7 19:40:40.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:40:40.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:40:49.670 INFO ProgressMeter - NC_035782.1:55953957 337.7 1296440 3838.8 19:41:00.682 INFO ProgressMeter - NC_035782.1:56011041 337.9 1296860 3837.9 19:41:03.325 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:41:06.064 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:41:10.722 INFO ProgressMeter - NC_035782.1:56081811 338.1 1297390 3837.6 19:41:20.747 INFO ProgressMeter - NC_035782.1:56135508 338.2 1297820 3837.0 19:41:30.823 INFO ProgressMeter - NC_035782.1:56207379 338.4 1298440 3836.9 19:41:41.638 INFO ProgressMeter - NC_035782.1:56266660 338.6 1298890 3836.2 19:41:47.460 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:41:47.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:41:48.550 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:41:49.178 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:41:49.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:41:49.195 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:41:50.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:41:50.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:41:51.691 INFO ProgressMeter - NC_035782.1:56515646 338.8 1300370 3838.7 19:41:52.285 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:41:56.274 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:01.516 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:01.517 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:01.517 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:01.859 INFO ProgressMeter - NC_035782.1:56716273 338.9 1301740 3840.8 19:42:03.033 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:11.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:12.032 INFO ProgressMeter - NC_035782.1:56843631 339.1 1302790 3841.9 19:42:20.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:22.285 INFO ProgressMeter - NC_035782.1:56900817 339.3 1303240 3841.3 19:42:32.432 INFO ProgressMeter - NC_035782.1:56994319 339.4 1303970 3841.6 19:42:39.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:39.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:42.519 INFO ProgressMeter - NC_035782.1:57058816 339.6 1304460 3841.1 19:42:48.927 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:50.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:51.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:51.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:51.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:42:52.593 INFO ProgressMeter - NC_035782.1:57263872 339.8 1305770 3843.1 19:42:56.101 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:43:00.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:43:00.406 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:43:04.208 INFO ProgressMeter - NC_035782.1:57474610 340.0 1307200 3845.1 19:43:14.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:43:14.843 INFO ProgressMeter - NC_035782.1:57632257 340.1 1308190 3846.0 19:43:21.637 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:43:25.303 INFO ProgressMeter - NC_035782.1:57702338 340.3 1308760 3845.7 19:43:35.330 INFO ProgressMeter - NC_035782.1:57779762 340.5 1309380 3845.6 19:43:45.538 INFO ProgressMeter - NC_035782.1:57867467 340.7 1310040 3845.7 19:43:46.232 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:43:55.737 INFO ProgressMeter - NC_035782.1:57937891 340.8 1310580 3845.3 19:44:03.383 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:44:05.742 INFO ProgressMeter - NC_035782.1:57993801 341.0 1311020 3844.7 19:44:15.776 INFO ProgressMeter - NC_035782.1:58068657 341.2 1311630 3844.6 19:44:25.835 INFO ProgressMeter - NC_035782.1:58116084 341.3 1312000 3843.8 19:44:35.870 INFO ProgressMeter - NC_035782.1:58190711 341.5 1312630 3843.8 19:44:46.000 INFO ProgressMeter - NC_035782.1:58306459 341.7 1313570 3844.6 19:44:49.854 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:44:56.135 INFO ProgressMeter - NC_035782.1:58374471 341.8 1314100 3844.3 19:45:07.142 INFO ProgressMeter - NC_035782.1:58419446 342.0 1314470 3843.3 19:45:17.164 INFO ProgressMeter - NC_035782.1:58474326 342.2 1314920 3842.8 19:45:20.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:45:26.519 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:45:26.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:45:27.148 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:45:27.306 INFO ProgressMeter - NC_035782.1:58602353 342.4 1315790 3843.4 19:45:27.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:45:37.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:45:38.234 INFO ProgressMeter - NC_035782.1:58686154 342.5 1316450 3843.3 19:45:39.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:45:47.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:45:47.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:45:48.298 INFO ProgressMeter - NC_035782.1:58708351 342.7 1316620 3841.9 19:45:52.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:45:58.399 INFO ProgressMeter - NC_035782.1:58767756 342.9 1317080 3841.4 19:46:08.908 INFO ProgressMeter - NC_035782.1:58832120 343.0 1317530 3840.7 19:46:12.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:46:12.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:46:13.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:46:15.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:46:19.244 INFO ProgressMeter - NC_035782.1:58899771 343.2 1318060 3840.3 19:46:29.858 INFO ProgressMeter - NC_035782.1:58970106 343.4 1318640 3840.0 19:46:34.407 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:46:40.320 INFO ProgressMeter - NC_035782.1:59034369 343.6 1319170 3839.6 19:46:42.811 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:46:44.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:46:44.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:46:44.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:46:44.884 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:46:50.599 INFO ProgressMeter - NC_035782.1:59115941 343.7 1319830 3839.6 19:47:02.083 INFO ProgressMeter - NC_035782.1:59199957 343.9 1320510 3839.5 19:47:05.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:47:07.336 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:47:07.392 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:47:09.029 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:47:09.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:47:09.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:47:10.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:47:11.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:47:12.597 INFO ProgressMeter - NC_035782.1:59339456 344.1 1321440 3840.2 19:47:22.753 INFO ProgressMeter - NC_035782.1:59407863 344.3 1321910 3839.7 19:47:32.664 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:47:32.988 INFO ProgressMeter - NC_035782.1:59446259 344.4 1322210 3838.7 19:47:36.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:47:42.996 INFO ProgressMeter - NC_035782.1:59511448 344.6 1322720 3838.3 19:47:53.601 INFO ProgressMeter - NC_035782.1:59566962 344.8 1323160 3837.6 19:48:01.125 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:48:04.047 INFO ProgressMeter - NC_035782.1:59609867 345.0 1323520 3836.7 19:48:10.365 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:48:14.303 INFO ProgressMeter - NC_035782.1:59648143 345.1 1323810 3835.6 19:48:19.215 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:48:19.216 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:48:24.407 INFO ProgressMeter - NC_035782.1:59721800 345.3 1324350 3835.3 19:48:24.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:48:34.570 INFO ProgressMeter - NC_035782.1:59801311 345.5 1324940 3835.2 19:48:37.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:48:44.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:48:44.584 INFO ProgressMeter - NC_035782.1:59939994 345.6 1325990 3836.3 19:48:44.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:48:44.919 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:48:49.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:48:49.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:48:54.585 INFO ProgressMeter - NC_035782.1:60102067 345.8 1327180 3837.9 19:49:04.916 INFO ProgressMeter - NC_035782.1:60137330 346.0 1327490 3836.9 19:49:15.023 INFO ProgressMeter - NC_035782.1:60194473 346.1 1327950 3836.4 19:49:25.258 INFO ProgressMeter - NC_035782.1:60266110 346.3 1328540 3836.2 19:49:35.272 INFO ProgressMeter - NC_035782.1:60329908 346.5 1329070 3835.9 19:49:36.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:49:39.527 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:49:45.671 INFO ProgressMeter - NC_035782.1:60428867 346.7 1329810 3836.1 19:49:47.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:49:47.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:49:47.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:49:47.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:49:56.325 INFO ProgressMeter - NC_035782.1:60586454 346.8 1330800 3837.0 19:50:06.415 INFO ProgressMeter - NC_035782.1:60623318 347.0 1331090 3836.0 19:50:16.437 INFO ProgressMeter - NC_035782.1:60675056 347.2 1331540 3835.4 19:50:26.541 INFO ProgressMeter - NC_035782.1:60721211 347.3 1331870 3834.5 19:50:29.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:50:36.558 INFO ProgressMeter - NC_035782.1:60803457 347.5 1332460 3834.4 19:50:38.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:50:38.985 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:50:45.081 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:50:46.478 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:50:46.599 INFO ProgressMeter - NC_035782.1:60912864 347.7 1333210 3834.7 19:50:53.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:50:56.641 INFO ProgressMeter - NC_035782.1:60985880 347.8 1333780 3834.5 19:51:06.753 INFO ProgressMeter - NC_035782.1:61022043 348.0 1334050 3833.4 19:51:10.077 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:51:10.077 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:51:16.800 INFO ProgressMeter - NC_035782.1:61129425 348.2 1334830 3833.8 19:51:26.805 INFO ProgressMeter - NC_035782.1:61166237 348.3 1335120 3832.8 19:51:37.377 INFO ProgressMeter - NC_035782.1:61214465 348.5 1335540 3832.0 19:51:47.934 INFO ProgressMeter - NC_035782.1:61257283 348.7 1335870 3831.1 19:51:58.143 INFO ProgressMeter - NC_035782.1:61310801 348.9 1336320 3830.5 19:52:08.228 INFO ProgressMeter - NC_035782.1:61364369 349.0 1336770 3829.9 19:52:17.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:52:17.568 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:52:18.928 INFO ProgressMeter - NC_035782.1:61437422 349.2 1337280 3829.4 19:52:29.015 INFO ProgressMeter - NC_035782.1:61552522 349.4 1338230 3830.3 19:52:38.540 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:52:39.025 INFO ProgressMeter - NC_035782.1:61649335 349.5 1338980 3830.6 19:52:39.125 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:52:43.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:52:49.513 INFO ProgressMeter - NC_035782.1:61806669 349.7 1340220 3832.3 19:52:51.025 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:52:53.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:52:53.494 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:52:58.971 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:52:59.641 INFO ProgressMeter - NC_035782.1:61850865 349.9 1340550 3831.4 19:53:10.108 INFO ProgressMeter - NC_035782.1:61907258 350.1 1340990 3830.7 19:53:20.108 INFO ProgressMeter - NC_035782.1:61965497 350.2 1341460 3830.2 19:53:30.137 INFO ProgressMeter - NC_035782.1:62059103 350.4 1342190 3830.5 19:53:40.646 INFO ProgressMeter - NC_035782.1:62105839 350.6 1342550 3829.6 19:53:45.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:53:51.104 INFO ProgressMeter - NC_035782.1:62179749 350.7 1343150 3829.4 19:54:01.209 INFO ProgressMeter - NC_035782.1:62234415 350.9 1343570 3828.8 19:54:03.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:54:03.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:54:03.115 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:54:03.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:54:11.529 INFO ProgressMeter - NC_035782.1:62369371 351.1 1344620 3829.9 19:54:18.785 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:54:21.653 INFO ProgressMeter - NC_035782.1:62412461 351.3 1344950 3829.0 19:54:22.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:54:31.984 INFO ProgressMeter - NC_035782.1:62464130 351.4 1345350 3828.2 19:54:32.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:54:42.050 INFO ProgressMeter - NC_035782.1:62537508 351.6 1345890 3827.9 19:54:47.846 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:54:52.320 INFO ProgressMeter - NC_035782.1:62622869 351.8 1346540 3827.9 19:55:01.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:55:03.023 INFO ProgressMeter - NC_035782.1:62701262 351.9 1347090 3827.5 19:55:09.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:55:12.950 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:55:12.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:55:12.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:55:13.050 INFO ProgressMeter - NC_035782.1:62785505 352.1 1347740 3827.6 19:55:22.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:55:23.587 INFO ProgressMeter - NC_035782.1:62921710 352.3 1348590 3828.1 19:55:29.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:55:33.658 INFO ProgressMeter - NC_035782.1:62999320 352.5 1349190 3828.0 19:55:44.000 INFO ProgressMeter - NC_035782.1:63048539 352.6 1349580 3827.2 19:55:54.806 INFO ProgressMeter - NC_035782.1:63091219 352.8 1349920 3826.2 19:56:05.275 INFO ProgressMeter - NC_035782.1:63140765 353.0 1350340 3825.5 19:56:15.376 INFO ProgressMeter - NC_035782.1:63236015 353.2 1350980 3825.5 19:56:15.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:56:25.516 INFO ProgressMeter - NC_035782.1:63276672 353.3 1351290 3824.5 19:56:35.626 INFO ProgressMeter - NC_035782.1:63337386 353.5 1351750 3824.0 19:56:46.288 INFO ProgressMeter - NC_035782.1:63417776 353.7 1352380 3823.9 19:56:48.459 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:56:56.336 INFO ProgressMeter - NC_035782.1:63476134 353.8 1352820 3823.3 19:57:06.787 INFO ProgressMeter - NC_035782.1:63507619 354.0 1353050 3822.1 19:57:13.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:57:16.047 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:57:16.850 INFO ProgressMeter - NC_035782.1:63576784 354.2 1353620 3821.9 19:57:19.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:57:26.880 INFO ProgressMeter - NC_035782.1:63698852 354.3 1354580 3822.8 19:57:33.691 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:57:37.646 INFO ProgressMeter - NC_035782.1:63823068 354.5 1355500 3823.4 19:57:41.026 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:57:43.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:57:43.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:57:47.634 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:57:47.695 INFO ProgressMeter - NC_035782.1:63979710 354.7 1356730 3825.1 19:57:51.304 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:57:56.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:57:56.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:57:57.703 INFO ProgressMeter - NC_035782.1:64137331 354.9 1357940 3826.7 19:58:05.954 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:58:08.528 INFO ProgressMeter - NC_035782.1:64206309 355.0 1358510 3826.4 19:58:18.750 INFO ProgressMeter - NC_035782.1:64264464 355.2 1358940 3825.8 19:58:23.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:58:23.919 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:58:23.919 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:58:23.919 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:58:29.597 INFO ProgressMeter - NC_035782.1:64314259 355.4 1359310 3824.9 19:58:35.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:58:35.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:58:40.520 INFO ProgressMeter - NC_035782.1:64365567 355.6 1359700 3824.0 19:58:51.581 INFO ProgressMeter - NC_035782.1:64419212 355.8 1360100 3823.1 19:59:01.832 INFO ProgressMeter - NC_035782.1:64449998 355.9 1360340 3822.0 19:59:12.027 INFO ProgressMeter - NC_035782.1:64494742 356.1 1360700 3821.2 19:59:17.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:59:22.766 INFO ProgressMeter - NC_035782.1:64526094 356.3 1360950 3819.9 19:59:33.563 INFO ProgressMeter - NC_035782.1:64553092 356.5 1361150 3818.6 19:59:37.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:59:43.563 INFO ProgressMeter - NC_035782.1:64581645 356.6 1361360 3817.4 19:59:44.382 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:59:53.589 INFO ProgressMeter - NC_035782.1:64609969 356.8 1361600 3816.3 19:59:56.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 19:59:56.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:00:03.637 INFO ProgressMeter - NC_035782.1:64712511 357.0 1362300 3816.4 20:00:13.680 INFO ProgressMeter - NC_035782.1:64749551 357.1 1362600 3815.5 20:00:23.849 INFO ProgressMeter - NC_035782.1:64793312 357.3 1362950 3814.7 20:00:27.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:00:34.015 INFO ProgressMeter - NC_035782.1:64826946 357.5 1363200 3813.5 20:00:44.070 INFO ProgressMeter - NC_035782.1:64850431 357.6 1363380 3812.3 20:00:47.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:00:47.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:00:54.157 INFO ProgressMeter - NC_035782.1:64904360 357.8 1363800 3811.6 20:00:56.426 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:01:04.272 INFO ProgressMeter - NC_035782.1:64972566 358.0 1364340 3811.4 20:01:05.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:01:05.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:01:05.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:01:14.404 INFO ProgressMeter - NC_035782.1:65034924 358.1 1364820 3810.9 20:01:24.405 INFO ProgressMeter - NC_035782.1:65083298 358.3 1365190 3810.2 20:01:24.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:01:34.460 INFO ProgressMeter - NC_035782.1:65132081 358.5 1365580 3809.5 20:01:37.799 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:01:44.698 INFO ProgressMeter - NC_035782.1:65190885 358.6 1366070 3809.0 20:01:47.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:01:47.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:01:47.571 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:01:54.906 INFO ProgressMeter - NC_035782.1:65235948 358.8 1366430 3808.2 20:02:04.080 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:02:05.430 INFO ProgressMeter - NC_035782.1:65320945 359.0 1367150 3808.4 20:02:15.518 INFO ProgressMeter - NC_035782.1:65392180 359.2 1367720 3808.2 20:02:25.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:02:25.556 INFO ProgressMeter - NC_035782.1:65463910 359.3 1368310 3808.0 20:02:35.653 INFO ProgressMeter - NC_035782.1:65584587 359.5 1369290 3809.0 20:02:36.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:02:39.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:02:39.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:02:39.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:02:39.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:02:42.073 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:02:45.663 INFO ProgressMeter - NC_035782.1:65719016 359.7 1370210 3809.8 20:02:55.693 INFO ProgressMeter - NC_035782.1:65848524 359.8 1371180 3810.7 20:02:56.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:00.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:01.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:03.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:04.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:04.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:05.713 INFO ProgressMeter - NC_035782.1:66192983 360.0 1372810 3813.5 20:03:06.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:06.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:09.798 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:09.799 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:11.383 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:11.398 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:11.503 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:12.014 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:12.252 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:12.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:13.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:14.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:14.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:16.319 INFO ProgressMeter - NC_035782.1:66582776 360.2 1374750 3817.0 20:03:17.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:19.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:19.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:22.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:23.540 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:26.936 INFO ProgressMeter - NC_035782.1:66694488 360.3 1375550 3817.3 20:03:27.243 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:28.993 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:29.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:31.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:37.289 INFO ProgressMeter - NC_035782.1:66815503 360.5 1376520 3818.2 20:03:40.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:42.195 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:44.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:44.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:46.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:46.654 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:46.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:03:47.385 INFO ProgressMeter - NC_035782.1:66954009 360.7 1377560 3819.3 20:03:58.173 INFO ProgressMeter - NC_035782.1:67030772 360.9 1378160 3819.0 20:04:01.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:04:08.364 INFO ProgressMeter - NC_035782.1:67065823 361.0 1378410 3817.9 20:04:18.445 INFO ProgressMeter - NC_035782.1:67113265 361.2 1378790 3817.2 20:04:23.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:04:28.681 INFO ProgressMeter - NC_035782.1:67178781 361.4 1379310 3816.9 20:04:38.807 INFO ProgressMeter - NC_035782.1:67210097 361.5 1379550 3815.7 20:04:49.417 INFO ProgressMeter - NC_035782.1:67248005 361.7 1379840 3814.7 20:05:00.301 INFO ProgressMeter - NC_035782.1:67271306 361.9 1380010 3813.2 20:05:10.335 INFO ProgressMeter - NC_035782.1:67297264 362.1 1380210 3812.0 20:05:18.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:05:18.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:05:18.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:05:20.536 INFO ProgressMeter - NC_035782.1:67373670 362.2 1380710 3811.6 20:05:22.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:05:30.663 INFO ProgressMeter - NC_035782.1:67437062 362.4 1381230 3811.3 20:05:40.663 INFO ProgressMeter - NC_035782.1:67501181 362.6 1381710 3810.8 20:05:51.036 INFO ProgressMeter - NC_035782.1:67559808 362.7 1382150 3810.2 20:06:01.243 INFO ProgressMeter - NC_035782.1:67631681 362.9 1382740 3810.1 20:06:11.153 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:06:11.282 INFO ProgressMeter - NC_035782.1:67761059 363.1 1383790 3811.2 20:06:21.473 INFO ProgressMeter - NC_035782.1:67915276 363.3 1385010 3812.8 20:06:27.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:06:27.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:06:28.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:06:31.496 INFO ProgressMeter - NC_035782.1:67949159 363.4 1385250 3811.7 20:06:36.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:06:41.533 INFO ProgressMeter - NC_035782.1:68024496 363.6 1385820 3811.5 20:06:51.584 INFO ProgressMeter - NC_035782.1:68070160 363.8 1386180 3810.7 20:06:59.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:06:59.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:07:01.638 INFO ProgressMeter - NC_035782.1:68145346 363.9 1386800 3810.7 20:07:04.518 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:07:12.005 INFO ProgressMeter - NC_035782.1:68199466 364.1 1387230 3810.1 20:07:23.457 INFO ProgressMeter - NC_035782.1:68228691 364.3 1387460 3808.7 20:07:33.887 INFO ProgressMeter - NC_035782.1:68346502 364.5 1388380 3809.4 20:07:43.945 INFO ProgressMeter - NC_035782.1:68377082 364.6 1388620 3808.3 20:07:50.251 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:07:51.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:07:54.841 INFO ProgressMeter - NC_035782.1:68428066 364.8 1389010 3807.5 20:08:05.161 INFO ProgressMeter - NC_035782.1:68457000 365.0 1389250 3806.4 20:08:15.241 INFO ProgressMeter - NC_035782.1:68498427 365.1 1389590 3805.5 20:08:18.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:08:26.104 INFO ProgressMeter - NC_035782.1:68523102 365.3 1389790 3804.2 20:08:32.341 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:08:32.341 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:08:36.284 INFO ProgressMeter - NC_035782.1:68556718 365.5 1390030 3803.1 20:08:39.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:08:40.085 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:08:46.626 INFO ProgressMeter - NC_035782.1:68584767 365.7 1390240 3801.9 20:08:56.741 INFO ProgressMeter - NC_035782.1:68635756 365.8 1390650 3801.2 20:09:06.784 INFO ProgressMeter - NC_035782.1:68671377 366.0 1390960 3800.3 20:09:06.940 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:09:16.833 INFO ProgressMeter - NC_035782.1:68727554 366.2 1391390 3799.8 20:09:19.931 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:09:24.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:09:24.485 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:09:24.486 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:09:24.486 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:09:27.700 INFO ProgressMeter - NC_035782.1:68901215 366.4 1392470 3800.9 20:09:37.952 INFO ProgressMeter - NC_035782.1:68986164 366.5 1393080 3800.7 20:09:38.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:09:47.985 INFO ProgressMeter - NC_035782.1:69105562 366.7 1393970 3801.4 20:09:52.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:09:57.590 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:09:57.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:09:58.020 INFO ProgressMeter - NC_035782.1:69236917 366.9 1394890 3802.2 20:09:59.880 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:10:05.108 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:10:05.108 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:10:05.419 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:10:06.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:10:06.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:10:08.101 INFO ProgressMeter - NC_035782.1:69515345 367.0 1396650 3805.3 20:10:09.512 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:10:09.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:10:12.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:10:18.586 INFO ProgressMeter - NC_035782.1:69695261 367.2 1397860 3806.8 20:10:29.434 INFO ProgressMeter - NC_035782.1:69749687 367.4 1398210 3805.8 20:10:40.703 INFO ProgressMeter - NC_035782.1:69784947 367.6 1398480 3804.6 20:10:50.882 INFO ProgressMeter - NC_035782.1:69806132 367.7 1398640 3803.3 20:11:00.951 INFO ProgressMeter - NC_035782.1:69870645 367.9 1399150 3803.0 20:11:10.707 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:11:11.255 INFO ProgressMeter - NC_035782.1:69914155 368.1 1399480 3802.1 20:11:21.802 INFO ProgressMeter - NC_035782.1:69945384 368.3 1399730 3800.9 20:11:23.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:11:24.052 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:11:24.052 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:11:24.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:11:31.831 INFO ProgressMeter - NC_035782.1:69993158 368.4 1400090 3800.2 20:11:42.120 INFO ProgressMeter - NC_035782.1:70050177 368.6 1400530 3799.6 20:11:52.964 INFO ProgressMeter - NC_035782.1:70097995 368.8 1400900 3798.8 20:11:54.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:11:58.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:11:58.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:11:58.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:11:58.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:11:58.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:11:58.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:11:58.773 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:00.063 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:03.027 INFO ProgressMeter - NC_035782.1:70243175 368.9 1401950 3799.9 20:12:06.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:06.246 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:13.172 INFO ProgressMeter - NC_035782.1:70407943 369.1 1403140 3801.4 20:12:13.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:13.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:13.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:21.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:21.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:21.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:23.936 INFO ProgressMeter - NC_035782.1:70508413 369.3 1403920 3801.6 20:12:26.654 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:33.938 INFO ProgressMeter - NC_035782.1:70692522 369.5 1405060 3803.0 20:12:40.508 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:42.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:43.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:43.944 INFO ProgressMeter - NC_035782.1:70984892 369.6 1406690 3805.7 20:12:44.203 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:44.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:44.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:46.149 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:46.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:47.997 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:47.997 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:52.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:12:54.282 INFO ProgressMeter - NC_035782.1:71252731 369.8 1408190 3808.0 20:12:55.400 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:01.521 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:01.521 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:04.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:04.293 INFO ProgressMeter - NC_035782.1:71467491 370.0 1409610 3810.1 20:13:05.410 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:05.808 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:10.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:10.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:11.296 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:14.371 INFO ProgressMeter - NC_035782.1:71650616 370.1 1410870 3811.8 20:13:23.443 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:23.810 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:24.381 INFO ProgressMeter - NC_035782.1:71836619 370.3 1412220 3813.7 20:13:24.394 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:27.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:28.116 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:28.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:34.403 INFO ProgressMeter - NC_035782.1:72070973 370.5 1413630 3815.8 20:13:40.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:40.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:40.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:44.698 INFO ProgressMeter - NC_035782.1:72234030 370.6 1414760 3817.1 20:13:54.760 INFO ProgressMeter - NC_035782.1:72457225 370.8 1416340 3819.6 20:13:59.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:13:59.790 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:00.336 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:00.336 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:03.983 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:05.313 INFO ProgressMeter - NC_035782.1:72623727 371.0 1417450 3820.8 20:14:07.729 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:07.944 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:11.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:15.543 INFO ProgressMeter - NC_035782.1:72857619 371.2 1418930 3823.0 20:14:16.779 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:16.779 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:16.907 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:21.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:25.747 INFO ProgressMeter - NC_035782.1:73059337 371.3 1420320 3825.0 20:14:35.015 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:35.540 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:35.705 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:35.769 INFO ProgressMeter - NC_035782.1:73285130 371.5 1421720 3827.1 20:14:38.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:45.365 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:45.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:45.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:45.805 INFO ProgressMeter - NC_035782.1:73503978 371.7 1423280 3829.5 20:14:50.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:14:55.812 INFO ProgressMeter - NC_035782.1:73655611 371.8 1424360 3830.7 20:14:58.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:15:05.332 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:15:05.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:15:06.253 INFO ProgressMeter - NC_035782.1:73868764 372.0 1425650 3832.4 20:15:09.402 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:15:13.476 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:15:13.476 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:15:16.448 INFO ProgressMeter - NC_035782.1:74073906 372.2 1426990 3834.2 20:15:27.106 INFO ProgressMeter - NC_035782.1:74103066 372.3 1427170 3832.9 20:15:37.305 INFO ProgressMeter - NC_035782.1:74195532 372.5 1427740 3832.7 20:15:40.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:15:40.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:15:40.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:15:44.646 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:15:44.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:15:47.713 INFO ProgressMeter - NC_035782.1:74377394 372.7 1428920 3834.1 20:15:52.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:15:57.721 INFO ProgressMeter - NC_035782.1:74532848 372.9 1429930 3835.1 20:16:03.292 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:06.001 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:07.920 INFO ProgressMeter - NC_035782.1:74730354 373.0 1431270 3836.9 20:16:14.012 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:14.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:14.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:18.332 INFO ProgressMeter - NC_035782.1:74931918 373.2 1432620 3838.7 20:16:20.907 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:22.945 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:22.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:25.332 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:25.777 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:28.849 INFO ProgressMeter - NC_035782.1:75108889 373.4 1433760 3840.0 20:16:39.273 INFO ProgressMeter - NC_035782.1:75157107 373.6 1434140 3839.2 20:16:41.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:41.752 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:44.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:16:49.701 INFO ProgressMeter - NC_035782.1:75246540 373.7 1434820 3839.3 20:17:00.044 INFO ProgressMeter - NC_035782.1:75281146 373.9 1435090 3838.2 20:17:10.414 INFO ProgressMeter - NC_035782.1:75320391 374.1 1435390 3837.2 20:17:13.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:17:15.642 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:17:20.816 INFO ProgressMeter - NC_035782.1:75430689 374.2 1436110 3837.4 20:17:30.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:17:30.823 INFO ProgressMeter - NC_035782.1:75515911 374.4 1436740 3837.4 20:17:37.485 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:17:37.532 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:17:39.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:17:40.869 INFO ProgressMeter - NC_035782.1:75705116 374.6 1438060 3839.2 20:17:49.297 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:17:50.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:17:50.355 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:17:50.355 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:17:50.377 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:17:50.880 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:17:50.888 INFO ProgressMeter - NC_035782.1:75930915 374.7 1439170 3840.4 20:18:01.077 INFO ProgressMeter - NC_035782.1:75971903 374.9 1439480 3839.5 20:18:01.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:11.335 INFO ProgressMeter - NC_035782.1:76055366 375.1 1440020 3839.2 20:18:14.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:15.467 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:18.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:20.378 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:20.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:21.696 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:21.697 INFO ProgressMeter - NC_035782.1:76250745 375.3 1441060 3840.2 20:18:22.213 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:22.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:22.662 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:24.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:25.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:26.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:30.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:30.541 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:31.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:32.115 INFO ProgressMeter - NC_035782.1:76681990 375.4 1443070 3843.8 20:18:32.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:32.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:32.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:32.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:39.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:39.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:39.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:39.823 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:42.394 INFO ProgressMeter - NC_035782.1:76917764 375.6 1444350 3845.4 20:18:45.829 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:45.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:46.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:46.579 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:46.579 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:47.679 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:52.412 INFO ProgressMeter - NC_035783.1:20265 375.8 1445300 3846.2 20:18:54.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:54.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:18:54.550 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:03.210 INFO ProgressMeter - NC_035783.1:152791 375.9 1446250 3846.9 20:19:03.888 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:13.296 INFO ProgressMeter - NC_035783.1:254286 376.1 1446980 3847.2 20:19:22.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:23.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:23.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:23.469 INFO ProgressMeter - NC_035783.1:578966 376.3 1448970 3850.7 20:19:30.289 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:33.718 INFO ProgressMeter - NC_035783.1:681474 376.5 1449730 3851.0 20:19:43.796 INFO ProgressMeter - NC_035783.1:888485 376.6 1451050 3852.8 20:19:47.731 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:47.731 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:47.731 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:48.880 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:48.933 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:49.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:51.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:52.997 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:53.337 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:53.367 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:53.431 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:19:53.800 INFO ProgressMeter - NC_035783.1:1155473 376.8 1452690 3855.4 20:20:04.925 INFO ProgressMeter - NC_035783.1:1268073 377.0 1453580 3855.9 20:20:15.049 INFO ProgressMeter - NC_035783.1:1329841 377.1 1454040 3855.4 20:20:20.953 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:20:25.113 INFO ProgressMeter - NC_035783.1:1385387 377.3 1454460 3854.8 20:20:27.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:20:27.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:20:27.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:20:27.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:20:35.473 INFO ProgressMeter - NC_035783.1:1448034 377.5 1454960 3854.3 20:20:45.536 INFO ProgressMeter - NC_035783.1:1497696 377.7 1455320 3853.6 20:20:46.389 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:20:46.390 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:20:55.964 INFO ProgressMeter - NC_035783.1:1587630 377.8 1455900 3853.3 20:20:56.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:20:56.127 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:21:01.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:21:05.980 INFO ProgressMeter - NC_035783.1:1683868 378.0 1456610 3853.5 20:21:11.261 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:21:12.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:21:12.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:21:15.775 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:21:16.009 INFO ProgressMeter - NC_035783.1:1794596 378.2 1457410 3853.9 20:21:26.618 INFO ProgressMeter - NC_035783.1:1885228 378.3 1458050 3853.8 20:21:33.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:21:33.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:21:36.748 INFO ProgressMeter - NC_035783.1:1934304 378.5 1458430 3853.1 20:21:46.919 INFO ProgressMeter - NC_035783.1:1998835 378.7 1458950 3852.8 20:21:57.112 INFO ProgressMeter - NC_035783.1:2067481 378.8 1459520 3852.5 20:22:07.171 INFO ProgressMeter - NC_035783.1:2143399 379.0 1460120 3852.4 20:22:09.290 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:22:17.242 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:22:17.278 INFO ProgressMeter - NC_035783.1:2237633 379.2 1460810 3852.5 20:22:27.694 INFO ProgressMeter - NC_035783.1:2340925 379.4 1461660 3853.0 20:22:32.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:22:38.136 INFO ProgressMeter - NC_035783.1:2400741 379.5 1462140 3852.5 20:22:48.317 INFO ProgressMeter - NC_035783.1:2463978 379.7 1462640 3852.1 20:22:51.200 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:22:53.625 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:22:53.626 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:22:55.669 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:22:55.993 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:22:58.374 INFO ProgressMeter - NC_035783.1:2554835 379.9 1463310 3852.1 20:23:02.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:23:08.431 INFO ProgressMeter - NC_035783.1:2635482 380.0 1463940 3852.1 20:23:18.950 INFO ProgressMeter - NC_035783.1:2714243 380.2 1464530 3851.9 20:23:29.240 INFO ProgressMeter - NC_035783.1:2791782 380.4 1465170 3851.8 20:23:32.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:23:32.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:23:39.384 INFO ProgressMeter - NC_035783.1:2862199 380.6 1465700 3851.5 20:23:49.701 INFO ProgressMeter - NC_035783.1:2930023 380.7 1466180 3851.0 20:23:57.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:23:57.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:23:59.783 INFO ProgressMeter - NC_035783.1:3020723 380.9 1466940 3851.3 20:24:01.375 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:24:05.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:24:05.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:24:09.815 INFO ProgressMeter - NC_035783.1:3095218 381.1 1467560 3851.3 20:24:10.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:24:14.129 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:24:20.041 INFO ProgressMeter - NC_035783.1:3144878 381.2 1467930 3850.5 20:24:30.090 INFO ProgressMeter - NC_035783.1:3203592 381.4 1468350 3849.9 20:24:40.157 INFO ProgressMeter - NC_035783.1:3279599 381.6 1468920 3849.7 20:24:50.282 INFO ProgressMeter - NC_035783.1:3330415 381.7 1469320 3849.1 20:24:57.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:24:57.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:24:57.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:00.713 INFO ProgressMeter - NC_035783.1:3376559 381.9 1469670 3848.2 20:25:09.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:09.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:10.751 INFO ProgressMeter - NC_035783.1:3477603 382.1 1470410 3848.5 20:25:13.467 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:20.787 INFO ProgressMeter - NC_035783.1:3664391 382.2 1471640 3850.0 20:25:21.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:21.149 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:25.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:30.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:30.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:30.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:30.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:30.806 INFO ProgressMeter - NC_035783.1:3847617 382.4 1472970 3851.8 20:25:34.364 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:34.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:40.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:41.301 INFO ProgressMeter - NC_035783.1:4119061 382.6 1474630 3854.4 20:25:47.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:48.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:48.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:49.682 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:25:51.470 INFO ProgressMeter - NC_035783.1:4330290 382.8 1476130 3856.6 20:26:01.774 INFO ProgressMeter - NC_035783.1:4574559 382.9 1477770 3859.2 20:26:05.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:26:11.774 INFO ProgressMeter - NC_035783.1:4765641 383.1 1479070 3860.9 20:26:21.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:26:21.995 INFO ProgressMeter - NC_035783.1:4876132 383.3 1479820 3861.1 20:26:32.070 INFO ProgressMeter - NC_035783.1:5077955 383.4 1481240 3863.1 20:26:38.817 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:26:40.091 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:26:42.188 INFO ProgressMeter - NC_035783.1:5265651 383.6 1482520 3864.8 20:26:43.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:26:46.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:26:52.655 INFO ProgressMeter - NC_035783.1:5421846 383.8 1483520 3865.6 20:27:00.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:27:00.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:27:02.786 INFO ProgressMeter - NC_035783.1:5475884 383.9 1483930 3865.0 20:27:13.090 INFO ProgressMeter - NC_035783.1:5521815 384.1 1484320 3864.3 20:27:16.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:27:16.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:27:23.129 INFO ProgressMeter - NC_035783.1:5621675 384.3 1485050 3864.5 20:27:33.157 INFO ProgressMeter - NC_035783.1:5703144 384.4 1485670 3864.4 20:27:35.102 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:27:43.336 INFO ProgressMeter - NC_035783.1:5793943 384.6 1486400 3864.6 20:27:44.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:27:44.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:27:53.350 INFO ProgressMeter - NC_035783.1:5851282 384.8 1486830 3864.1 20:27:57.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:27:58.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:28:00.338 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:28:03.802 INFO ProgressMeter - NC_035783.1:5945966 385.0 1487620 3864.4 20:28:08.394 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:28:13.807 INFO ProgressMeter - NC_035783.1:6194754 385.1 1489200 3866.8 20:28:19.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:28:23.810 INFO ProgressMeter - NC_035783.1:6404589 385.3 1490590 3868.7 20:28:26.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:28:33.811 INFO ProgressMeter - NC_035783.1:6631679 385.5 1492080 3870.9 20:28:34.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:28:35.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:28:37.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:28:43.893 INFO ProgressMeter - NC_035783.1:6954562 385.6 1494120 3874.5 20:28:53.917 INFO ProgressMeter - NC_035783.1:7208926 385.8 1495640 3876.8 20:29:04.504 INFO ProgressMeter - NC_035783.1:7447169 386.0 1497270 3879.2 20:29:10.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:12.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:14.678 INFO ProgressMeter - NC_035783.1:7620648 386.1 1498580 3880.9 20:29:16.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:16.901 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:16.902 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:18.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:22.269 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:22.459 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:22.459 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:23.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:24.706 INFO ProgressMeter - NC_035783.1:7754635 386.3 1499660 3882.0 20:29:29.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:33.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:33.148 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:34.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:29:34.723 INFO ProgressMeter - NC_035783.1:7983451 386.5 1501490 3885.1 20:29:44.754 INFO ProgressMeter - NC_035783.1:8059436 386.6 1502090 3885.0 20:29:54.798 INFO ProgressMeter - NC_035783.1:8098154 386.8 1502380 3884.0 20:29:56.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:30:04.801 INFO ProgressMeter - NC_035783.1:8223334 387.0 1503360 3884.9 20:30:06.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:30:06.496 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:30:07.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:30:12.220 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:30:12.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:30:15.117 INFO ProgressMeter - NC_035783.1:8380051 387.1 1504650 3886.5 20:30:16.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:30:16.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:30:17.506 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:30:20.523 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:30:22.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:30:25.363 INFO ProgressMeter - NC_035783.1:8536362 387.3 1505880 3888.0 20:30:27.309 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:30:35.477 INFO ProgressMeter - NC_035783.1:8591351 387.5 1506280 3887.3 20:30:45.862 INFO ProgressMeter - NC_035783.1:8680099 387.7 1507020 3887.5 20:30:55.976 INFO ProgressMeter - NC_035783.1:8748183 387.8 1507600 3887.3 20:31:06.121 INFO ProgressMeter - NC_035783.1:8832522 388.0 1508290 3887.4 20:31:07.761 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:09.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:09.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:10.080 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:15.316 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:16.751 INFO ProgressMeter - NC_035783.1:8909669 388.2 1508740 3886.8 20:31:20.356 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:20.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:26.246 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:26.764 INFO ProgressMeter - NC_035783.1:9071716 388.3 1509810 3887.8 20:31:28.134 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:28.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:28.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:29.625 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:36.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:31:36.958 INFO ProgressMeter - NC_035783.1:9308280 388.5 1511300 3890.0 20:31:47.228 INFO ProgressMeter - NC_035783.1:9381216 388.7 1511840 3889.7 20:31:57.236 INFO ProgressMeter - NC_035783.1:9435202 388.8 1512250 3889.0 20:32:07.653 INFO ProgressMeter - NC_035783.1:9509767 389.0 1512840 3888.8 20:32:17.692 INFO ProgressMeter - NC_035783.1:9602498 389.2 1513580 3889.0 20:32:23.995 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:32:27.694 INFO ProgressMeter - NC_035783.1:9672479 389.4 1514150 3888.8 20:32:37.809 INFO ProgressMeter - NC_035783.1:9729805 389.5 1514640 3888.4 20:32:40.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:32:47.965 INFO ProgressMeter - NC_035783.1:9776871 389.7 1515030 3887.7 20:32:58.655 INFO ProgressMeter - NC_035783.1:9832682 389.9 1515480 3887.1 20:33:09.677 INFO ProgressMeter - NC_035783.1:9884789 390.1 1515830 3886.2 20:33:19.738 INFO ProgressMeter - NC_035783.1:9950466 390.2 1516320 3885.8 20:33:29.758 INFO ProgressMeter - NC_035783.1:10009383 390.4 1516800 3885.3 20:33:31.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:33:31.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:33:33.395 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:33:36.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:33:40.754 INFO ProgressMeter - NC_035783.1:10188927 390.6 1518250 3887.2 20:33:43.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:33:43.849 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:33:50.956 INFO ProgressMeter - NC_035783.1:10259240 390.7 1518790 3886.9 20:34:00.980 INFO ProgressMeter - NC_035783.1:10324366 390.9 1519320 3886.6 20:34:11.441 INFO ProgressMeter - NC_035783.1:10377879 391.1 1519740 3885.9 20:34:21.482 INFO ProgressMeter - NC_035783.1:10431086 391.3 1520150 3885.3 20:34:21.808 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:34:32.234 INFO ProgressMeter - NC_035783.1:10487067 391.4 1520610 3884.7 20:34:36.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:34:36.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:34:42.741 INFO ProgressMeter - NC_035783.1:10533876 391.6 1521010 3884.0 20:34:48.006 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:34:48.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:34:52.796 INFO ProgressMeter - NC_035783.1:10600567 391.8 1521550 3883.7 20:35:03.059 INFO ProgressMeter - NC_035783.1:10631449 391.9 1521800 3882.7 20:35:13.071 INFO ProgressMeter - NC_035783.1:10680687 392.1 1522200 3882.0 20:35:19.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:35:19.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:35:23.991 INFO ProgressMeter - NC_035783.1:10705118 392.3 1522360 3880.6 20:35:25.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:35:34.731 INFO ProgressMeter - NC_035783.1:10721992 392.5 1522490 3879.2 20:35:44.787 INFO ProgressMeter - NC_035783.1:10744497 392.6 1522670 3878.0 20:35:55.121 INFO ProgressMeter - NC_035783.1:10767894 392.8 1522850 3876.8 20:36:05.129 INFO ProgressMeter - NC_035783.1:10791982 393.0 1523030 3875.6 20:36:07.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:36:07.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:36:09.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:36:11.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:36:14.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:36:14.476 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:36:15.337 INFO ProgressMeter - NC_035783.1:10834801 393.2 1523320 3874.6 20:36:23.527 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:36:25.659 INFO ProgressMeter - NC_035783.1:10858884 393.3 1523510 3873.4 20:36:35.718 INFO ProgressMeter - NC_035783.1:10917256 393.5 1523970 3872.9 20:36:45.801 INFO ProgressMeter - NC_035783.1:10968064 393.7 1524380 3872.3 20:36:55.951 INFO ProgressMeter - NC_035783.1:11051648 393.8 1525040 3872.3 20:37:06.162 INFO ProgressMeter - NC_035783.1:11138000 394.0 1525740 3872.5 20:37:13.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:37:16.733 INFO ProgressMeter - NC_035783.1:11179183 394.2 1526070 3871.6 20:37:26.768 INFO ProgressMeter - NC_035783.1:11376348 394.3 1527400 3873.3 20:37:26.990 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:37:33.696 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:37:33.696 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:37:33.696 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:37:36.827 INFO ProgressMeter - NC_035783.1:11571561 394.5 1528580 3874.6 20:37:46.858 INFO ProgressMeter - NC_035783.1:11640461 394.7 1529150 3874.4 20:37:57.114 INFO ProgressMeter - NC_035783.1:11728159 394.8 1529860 3874.6 20:38:07.134 INFO ProgressMeter - NC_035783.1:11775540 395.0 1530230 3873.9 20:38:11.793 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:38:12.212 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:38:17.576 INFO ProgressMeter - NC_035783.1:11914989 395.2 1531150 3874.5 20:38:28.179 INFO ProgressMeter - NC_035783.1:11953226 395.4 1531470 3873.6 20:38:38.189 INFO ProgressMeter - NC_035783.1:11979508 395.5 1531670 3872.4 20:38:48.219 INFO ProgressMeter - NC_035783.1:12037341 395.7 1532140 3872.0 20:38:58.704 INFO ProgressMeter - NC_035783.1:12110980 395.9 1532730 3871.8 20:39:06.548 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:39:09.393 INFO ProgressMeter - NC_035783.1:12171776 396.1 1533200 3871.2 20:39:19.468 INFO ProgressMeter - NC_035783.1:12211688 396.2 1533490 3870.3 20:39:24.328 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:39:29.751 INFO ProgressMeter - NC_035783.1:12270113 396.4 1533960 3869.8 20:39:39.806 INFO ProgressMeter - NC_035783.1:12321823 396.6 1534380 3869.2 20:39:49.834 INFO ProgressMeter - NC_035783.1:12384022 396.7 1534860 3868.8 20:40:00.234 INFO ProgressMeter - NC_035783.1:12482917 396.9 1535660 3869.1 20:40:02.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:40:10.737 INFO ProgressMeter - NC_035783.1:12550143 397.1 1536170 3868.7 20:40:20.227 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:40:21.019 INFO ProgressMeter - NC_035783.1:12677982 397.2 1537040 3869.2 20:40:31.342 INFO ProgressMeter - NC_035783.1:12715804 397.4 1537340 3868.3 20:40:40.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:40:40.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:40:40.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:40:42.264 INFO ProgressMeter - NC_035783.1:12768257 397.6 1537790 3867.7 20:40:42.718 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:40:52.556 INFO ProgressMeter - NC_035783.1:12815219 397.8 1538170 3867.0 20:41:01.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:41:02.707 INFO ProgressMeter - NC_035783.1:12921791 397.9 1539030 3867.5 20:41:06.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:41:12.955 INFO ProgressMeter - NC_035783.1:12974864 398.1 1539420 3866.8 20:41:23.703 INFO ProgressMeter - NC_035783.1:13020789 398.3 1539780 3866.0 20:41:31.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:41:33.811 INFO ProgressMeter - NC_035783.1:13075866 398.5 1540250 3865.5 20:41:43.957 INFO ProgressMeter - NC_035783.1:13149034 398.6 1540790 3865.2 20:41:44.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:41:48.355 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:41:49.954 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:41:54.144 INFO ProgressMeter - NC_035783.1:13241723 398.8 1541550 3865.5 20:42:04.744 INFO ProgressMeter - NC_035783.1:13282336 399.0 1541870 3864.6 20:42:14.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:14.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:14.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:15.123 INFO ProgressMeter - NC_035783.1:13338887 399.1 1542290 3864.0 20:42:16.154 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:17.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:19.240 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:20.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:20.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:20.761 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:25.502 INFO ProgressMeter - NC_035783.1:13436105 399.3 1542990 3864.0 20:42:29.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:29.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:29.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:29.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:36.704 INFO ProgressMeter - NC_035783.1:13512177 399.5 1543570 3863.7 20:42:44.836 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:46.843 INFO ProgressMeter - NC_035783.1:13544235 399.7 1543840 3862.7 20:42:57.274 INFO ProgressMeter - NC_035783.1:13647028 399.9 1544700 3863.2 20:42:58.166 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:42:58.167 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:43:07.577 INFO ProgressMeter - NC_035783.1:13666484 400.0 1544850 3861.9 20:43:17.642 INFO ProgressMeter - NC_035783.1:13689361 400.2 1545030 3860.7 20:43:27.833 INFO ProgressMeter - NC_035783.1:13751420 400.4 1545510 3860.3 20:43:34.421 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:43:34.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:43:34.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:43:38.248 INFO ProgressMeter - NC_035783.1:13856203 400.5 1546270 3860.5 20:43:48.564 INFO ProgressMeter - NC_035783.1:13925580 400.7 1546810 3860.2 20:43:50.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:43:51.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:43:51.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:43:59.097 INFO ProgressMeter - NC_035783.1:14008174 400.9 1547450 3860.1 20:44:09.389 INFO ProgressMeter - NC_035783.1:14074045 401.1 1547980 3859.8 20:44:19.933 INFO ProgressMeter - NC_035783.1:14125997 401.2 1548420 3859.2 20:44:30.181 INFO ProgressMeter - NC_035783.1:14168074 401.4 1548750 3858.4 20:44:32.907 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:44:40.554 INFO ProgressMeter - NC_035783.1:14220007 401.6 1549180 3857.8 20:44:42.406 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:44:50.881 INFO ProgressMeter - NC_035783.1:14292395 401.7 1549780 3857.6 20:45:00.886 INFO ProgressMeter - NC_035783.1:14337955 401.9 1550140 3856.9 20:45:10.994 INFO ProgressMeter - NC_035783.1:14386338 402.1 1550550 3856.3 20:45:20.997 INFO ProgressMeter - NC_035783.1:14491193 402.2 1551360 3856.7 20:45:31.009 INFO ProgressMeter - NC_035783.1:14558731 402.4 1551910 3856.5 20:45:33.659 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:45:41.614 INFO ProgressMeter - NC_035783.1:14621891 402.6 1552410 3856.1 20:45:43.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:45:44.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:45:44.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:45:44.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:45:44.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:45:44.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:45:44.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:45:44.682 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:45:51.631 INFO ProgressMeter - NC_035783.1:14701612 402.8 1552990 3855.9 20:46:01.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:46:01.744 INFO ProgressMeter - NC_035783.1:14756644 402.9 1553440 3855.4 20:46:08.298 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:46:11.793 INFO ProgressMeter - NC_035783.1:14864325 403.1 1554260 3855.8 20:46:21.822 INFO ProgressMeter - NC_035783.1:14935406 403.3 1554790 3855.6 20:46:23.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:46:26.277 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:46:31.873 INFO ProgressMeter - NC_035783.1:15008407 403.4 1555360 3855.4 20:46:41.880 INFO ProgressMeter - NC_035783.1:15087400 403.6 1556010 3855.4 20:46:51.901 INFO ProgressMeter - NC_035783.1:15160097 403.8 1556590 3855.2 20:47:02.102 INFO ProgressMeter - NC_035783.1:15226664 403.9 1557140 3855.0 20:47:12.152 INFO ProgressMeter - NC_035783.1:15394159 404.1 1558350 3856.4 20:47:16.121 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:47:22.175 INFO ProgressMeter - NC_035783.1:15452166 404.3 1558830 3856.0 20:47:32.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:47:32.308 INFO ProgressMeter - NC_035783.1:15503427 404.4 1559240 3855.4 20:47:32.763 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:47:32.763 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:47:32.763 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:47:32.763 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:47:32.763 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:47:41.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:47:42.403 INFO ProgressMeter - NC_035783.1:15553689 404.6 1559610 3854.7 20:47:52.460 INFO ProgressMeter - NC_035783.1:15587666 404.8 1559880 3853.7 20:47:59.678 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:48:02.503 INFO ProgressMeter - NC_035783.1:15688163 404.9 1560630 3854.0 20:48:06.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:48:12.540 INFO ProgressMeter - NC_035783.1:15761892 405.1 1561240 3853.9 20:48:14.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:48:14.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:48:14.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:48:14.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:48:23.735 INFO ProgressMeter - NC_035783.1:15806449 405.3 1561600 3853.0 20:48:33.799 INFO ProgressMeter - NC_035783.1:15820384 405.5 1561700 3851.7 20:48:33.848 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:48:44.088 INFO ProgressMeter - NC_035783.1:15836352 405.6 1561810 3850.3 20:48:50.114 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:48:54.192 INFO ProgressMeter - NC_035783.1:15874007 405.8 1562080 3849.4 20:49:04.345 INFO ProgressMeter - NC_035783.1:15943755 406.0 1562670 3849.2 20:49:09.354 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:49:14.471 INFO ProgressMeter - NC_035783.1:16023563 406.1 1563260 3849.1 20:49:24.277 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:49:24.748 INFO ProgressMeter - NC_035783.1:16114502 406.3 1563960 3849.2 20:49:34.856 INFO ProgressMeter - NC_035783.1:16175894 406.5 1564440 3848.8 20:49:46.067 INFO ProgressMeter - NC_035783.1:16229374 406.7 1564850 3848.0 20:49:56.150 INFO ProgressMeter - NC_035783.1:16289653 406.8 1565320 3847.6 20:50:07.261 INFO ProgressMeter - NC_035783.1:16349945 407.0 1565730 3846.8 20:50:17.443 INFO ProgressMeter - NC_035783.1:16452190 407.2 1566500 3847.1 20:50:27.542 INFO ProgressMeter - NC_035783.1:16501547 407.4 1566900 3846.5 20:50:37.594 INFO ProgressMeter - NC_035783.1:16532764 407.5 1567150 3845.6 20:50:42.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:50:47.963 INFO ProgressMeter - NC_035783.1:16591598 407.7 1567620 3845.1 20:50:58.369 INFO ProgressMeter - NC_035783.1:16629600 407.9 1567910 3844.2 20:51:09.026 INFO ProgressMeter - NC_035783.1:16671084 408.0 1568250 3843.3 20:51:13.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:51:13.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:51:19.104 INFO ProgressMeter - NC_035783.1:16737476 408.2 1568750 3843.0 20:51:26.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:51:29.236 INFO ProgressMeter - NC_035783.1:16786882 408.4 1569150 3842.4 20:51:33.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:51:33.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:51:36.411 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:51:39.268 INFO ProgressMeter - NC_035783.1:16834949 408.6 1569480 3841.6 20:51:49.457 INFO ProgressMeter - NC_035783.1:16925350 408.7 1570200 3841.8 20:51:59.580 INFO ProgressMeter - NC_035783.1:17004213 408.9 1570840 3841.7 20:51:59.786 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:52:09.799 INFO ProgressMeter - NC_035783.1:17148100 409.1 1571930 3842.8 20:52:19.943 INFO ProgressMeter - NC_035783.1:17233375 409.2 1572630 3842.9 20:52:30.571 INFO ProgressMeter - NC_035783.1:17285880 409.4 1573060 3842.3 20:52:40.772 INFO ProgressMeter - NC_035783.1:17328660 409.6 1573400 3841.5 20:52:45.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:52:51.512 INFO ProgressMeter - NC_035783.1:17364503 409.8 1573670 3840.5 20:53:01.834 INFO ProgressMeter - NC_035783.1:17411745 409.9 1574050 3839.8 20:53:12.099 INFO ProgressMeter - NC_035783.1:17468427 410.1 1574460 3839.2 20:53:22.221 INFO ProgressMeter - NC_035783.1:17512851 410.3 1574780 3838.4 20:53:33.154 INFO ProgressMeter - NC_035783.1:17562040 410.4 1575140 3837.6 20:53:43.455 INFO ProgressMeter - NC_035783.1:17589647 410.6 1575340 3836.5 20:53:45.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:53:45.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:53:53.916 INFO ProgressMeter - NC_035783.1:17666614 410.8 1575970 3836.4 20:54:04.141 INFO ProgressMeter - NC_035783.1:17738684 411.0 1576570 3836.3 20:54:14.221 INFO ProgressMeter - NC_035783.1:17826253 411.1 1577280 3836.4 20:54:24.564 INFO ProgressMeter - NC_035783.1:17879537 411.3 1577710 3835.9 20:54:34.586 INFO ProgressMeter - NC_035783.1:17951450 411.5 1578260 3835.6 20:54:35.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:54:45.081 INFO ProgressMeter - NC_035783.1:18002915 411.6 1578650 3835.0 20:54:48.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:54:55.129 INFO ProgressMeter - NC_035783.1:18039266 411.8 1578880 3834.0 20:55:05.209 INFO ProgressMeter - NC_035783.1:18107154 412.0 1579430 3833.7 20:55:15.718 INFO ProgressMeter - NC_035783.1:18140218 412.2 1579650 3832.6 20:55:25.944 INFO ProgressMeter - NC_035783.1:18182323 412.3 1579960 3831.8 20:55:35.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:55:35.949 INFO ProgressMeter - NC_035783.1:18247421 412.5 1580440 3831.4 20:55:36.891 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:55:45.956 INFO ProgressMeter - NC_035783.1:18319622 412.7 1580990 3831.2 20:55:56.461 INFO ProgressMeter - NC_035783.1:18377804 412.8 1581480 3830.8 20:55:59.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:56:06.490 INFO ProgressMeter - NC_035783.1:18431691 413.0 1581930 3830.3 20:56:16.793 INFO ProgressMeter - NC_035783.1:18523113 413.2 1582660 3830.5 20:56:26.833 INFO ProgressMeter - NC_035783.1:18593420 413.3 1583250 3830.4 20:56:36.851 INFO ProgressMeter - NC_035783.1:18797142 413.5 1584830 3832.6 20:56:47.051 INFO ProgressMeter - NC_035783.1:18884853 413.7 1585530 3832.7 20:56:57.762 INFO ProgressMeter - NC_035783.1:18958598 413.9 1586070 3832.4 20:57:08.044 INFO ProgressMeter - NC_035783.1:19020452 414.0 1586550 3832.0 20:57:11.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:57:18.072 INFO ProgressMeter - NC_035783.1:19079728 414.2 1587040 3831.6 20:57:25.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:57:25.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:57:28.686 INFO ProgressMeter - NC_035783.1:19127771 414.4 1587420 3830.9 20:57:38.715 INFO ProgressMeter - NC_035783.1:19245043 414.5 1588380 3831.7 20:57:48.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:57:48.828 INFO ProgressMeter - NC_035783.1:19279479 414.7 1588650 3830.8 20:57:50.634 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:57:59.335 INFO ProgressMeter - NC_035783.1:19369012 414.9 1589240 3830.6 20:57:59.547 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:57:59.763 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:58:09.589 INFO ProgressMeter - NC_035783.1:19436798 415.1 1589770 3830.3 20:58:19.766 INFO ProgressMeter - NC_035783.1:19511338 415.2 1590350 3830.1 20:58:25.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:58:30.827 INFO ProgressMeter - NC_035783.1:19555113 415.4 1590680 3829.2 20:58:40.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:58:40.937 INFO ProgressMeter - NC_035783.1:19586725 415.6 1590900 3828.2 20:58:51.100 INFO ProgressMeter - NC_035783.1:19668685 415.7 1591520 3828.1 20:58:52.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:58:54.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:58:54.063 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:59:01.498 INFO ProgressMeter - NC_035783.1:19739489 415.9 1592020 3827.7 20:59:11.507 INFO ProgressMeter - NC_035783.1:19812291 416.1 1592610 3827.6 20:59:14.421 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 20:59:21.983 INFO ProgressMeter - NC_035783.1:19844078 416.3 1592830 3826.5 20:59:32.791 INFO ProgressMeter - NC_035783.1:19871783 416.4 1593020 3825.3 20:59:43.061 INFO ProgressMeter - NC_035783.1:19948570 416.6 1593610 3825.2 20:59:53.260 INFO ProgressMeter - NC_035783.1:20018125 416.8 1594190 3825.0 21:00:04.205 INFO ProgressMeter - NC_035783.1:20139088 417.0 1594940 3825.1 21:00:14.353 INFO ProgressMeter - NC_035783.1:20190331 417.1 1595320 3824.5 21:00:24.449 INFO ProgressMeter - NC_035783.1:20228330 417.3 1595620 3823.6 21:00:34.913 INFO ProgressMeter - NC_035783.1:20269549 417.5 1595930 3822.8 21:00:45.054 INFO ProgressMeter - NC_035783.1:20307308 417.6 1596200 3821.9 21:00:55.437 INFO ProgressMeter - NC_035783.1:20344189 417.8 1596480 3821.0 21:00:57.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:01:05.551 INFO ProgressMeter - NC_035783.1:20379847 418.0 1596760 3820.1 21:01:16.004 INFO ProgressMeter - NC_035783.1:20425470 418.2 1597110 3819.4 21:01:26.208 INFO ProgressMeter - NC_035783.1:20483090 418.3 1597490 3818.7 21:01:29.280 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:01:36.327 INFO ProgressMeter - NC_035783.1:20526540 418.5 1597800 3817.9 21:01:47.216 INFO ProgressMeter - NC_035783.1:20543738 418.7 1597910 3816.5 21:01:57.364 INFO ProgressMeter - NC_035783.1:20600488 418.9 1598340 3816.0 21:02:02.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:02:02.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:02:07.461 INFO ProgressMeter - NC_035783.1:20663122 419.0 1598790 3815.5 21:02:17.488 INFO ProgressMeter - NC_035783.1:20715513 419.2 1599230 3815.1 21:02:27.810 INFO ProgressMeter - NC_035783.1:20763108 419.4 1599580 3814.3 21:02:31.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:02:31.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:02:38.076 INFO ProgressMeter - NC_035783.1:20803550 419.5 1599890 3813.5 21:02:42.152 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:02:42.152 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:02:46.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:02:48.099 INFO ProgressMeter - NC_035783.1:20849402 419.7 1600230 3812.8 21:02:52.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:02:58.211 INFO ProgressMeter - NC_035783.1:20877667 419.9 1600420 3811.7 21:03:09.140 INFO ProgressMeter - NC_035783.1:20907861 420.0 1600620 3810.6 21:03:19.498 INFO ProgressMeter - NC_035783.1:20957971 420.2 1601010 3809.9 21:03:23.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:03:24.542 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:03:30.469 INFO ProgressMeter - NC_035783.1:21005011 420.4 1601370 3809.1 21:03:40.676 INFO ProgressMeter - NC_035783.1:21060113 420.6 1601790 3808.6 21:03:50.687 INFO ProgressMeter - NC_035783.1:21126770 420.7 1602310 3808.3 21:04:00.839 INFO ProgressMeter - NC_035783.1:21194768 420.9 1602800 3807.9 21:04:09.523 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:04:11.261 INFO ProgressMeter - NC_035783.1:21227912 421.1 1603070 3807.0 21:04:12.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:04:14.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:04:22.071 INFO ProgressMeter - NC_035783.1:21306261 421.3 1603650 3806.8 21:04:30.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:04:32.419 INFO ProgressMeter - NC_035783.1:21398555 421.4 1604390 3807.0 21:04:36.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:04:42.562 INFO ProgressMeter - NC_035783.1:21469009 421.6 1604980 3806.8 21:04:53.155 INFO ProgressMeter - NC_035783.1:21515725 421.8 1605360 3806.1 21:04:54.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:05:03.459 INFO ProgressMeter - NC_035783.1:21595372 422.0 1605880 3805.8 21:05:14.685 INFO ProgressMeter - NC_035783.1:21640479 422.1 1606210 3804.9 21:05:25.812 INFO ProgressMeter - NC_035783.1:21701390 422.3 1606660 3804.3 21:05:32.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:05:34.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:05:34.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:05:35.485 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:05:35.818 INFO ProgressMeter - NC_035783.1:21729001 422.5 1606850 3803.3 21:05:39.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:05:39.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:05:42.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:05:46.162 INFO ProgressMeter - NC_035783.1:21936465 422.7 1608130 3804.7 21:05:52.295 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:05:56.523 INFO ProgressMeter - NC_035783.1:22050320 422.8 1608900 3805.0 21:06:00.289 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:01.202 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:02.787 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:06.623 INFO ProgressMeter - NC_035783.1:22174836 423.0 1609790 3805.6 21:06:07.329 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:12.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:12.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:16.731 INFO ProgressMeter - NC_035783.1:22388551 423.2 1611120 3807.2 21:06:26.751 INFO ProgressMeter - NC_035783.1:22563197 423.3 1612270 3808.4 21:06:36.789 INFO ProgressMeter - NC_035783.1:22752350 423.5 1613550 3810.0 21:06:38.986 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:39.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:39.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:42.629 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:42.629 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:42.629 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:46.773 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:47.856 INFO ProgressMeter - NC_035783.1:22803413 423.7 1613930 3809.2 21:06:52.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:06:58.081 INFO ProgressMeter - NC_035783.1:22858961 423.9 1614360 3808.7 21:07:08.444 INFO ProgressMeter - NC_035783.1:22892282 424.0 1614600 3807.7 21:07:14.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:07:18.492 INFO ProgressMeter - NC_035783.1:22931674 424.2 1614860 3806.8 21:07:28.945 INFO ProgressMeter - NC_035783.1:22985470 424.4 1615260 3806.2 21:07:38.414 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:07:39.126 INFO ProgressMeter - NC_035783.1:23048405 424.5 1615710 3805.7 21:07:39.682 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:07:49.127 INFO ProgressMeter - NC_035783.1:23112361 424.7 1616170 3805.3 21:07:59.374 INFO ProgressMeter - NC_035783.1:23160931 424.9 1616530 3804.6 21:08:05.776 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:08:05.776 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:08:10.007 INFO ProgressMeter - NC_035783.1:23232386 425.1 1617070 3804.3 21:08:13.727 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:08:13.727 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:08:20.378 INFO ProgressMeter - NC_035783.1:23299844 425.2 1617570 3803.9 21:08:24.758 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:08:29.253 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:08:30.565 INFO ProgressMeter - NC_035783.1:23341390 425.4 1617910 3803.2 21:08:40.588 INFO ProgressMeter - NC_035783.1:23409919 425.6 1618400 3802.9 21:08:42.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:08:43.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:08:51.031 INFO ProgressMeter - NC_035783.1:23474497 425.7 1618850 3802.4 21:08:59.308 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:01.167 INFO ProgressMeter - NC_035783.1:23529781 425.9 1619150 3801.6 21:09:11.244 INFO ProgressMeter - NC_035783.1:23592229 426.1 1619580 3801.1 21:09:21.707 INFO ProgressMeter - NC_035783.1:23658753 426.3 1620110 3800.8 21:09:24.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:29.671 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:31.891 INFO ProgressMeter - NC_035783.1:23710866 426.4 1620480 3800.1 21:09:33.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:33.935 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:33.935 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:33.935 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:33.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:33.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:33.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:33.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:33.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:33.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:33.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:37.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:42.032 INFO ProgressMeter - NC_035783.1:23771865 426.6 1620920 3799.7 21:09:42.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:42.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:45.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:47.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:09:52.078 INFO ProgressMeter - NC_035783.1:23863708 426.8 1621550 3799.6 21:10:02.800 INFO ProgressMeter - NC_035783.1:23928119 426.9 1622030 3799.2 21:10:08.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:10:13.069 INFO ProgressMeter - NC_035783.1:24058347 427.1 1623130 3800.2 21:10:16.181 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:10:16.361 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:10:16.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:10:17.483 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:10:18.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:10:23.379 INFO ProgressMeter - NC_035783.1:24170401 427.3 1623980 3800.7 21:10:26.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:10:26.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:10:27.012 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:10:27.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:10:27.153 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:10:27.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:10:33.412 INFO ProgressMeter - NC_035783.1:24287768 427.5 1624810 3801.1 21:10:44.936 INFO ProgressMeter - NC_035783.1:24367946 427.6 1625360 3800.7 21:10:55.315 INFO ProgressMeter - NC_035783.1:24409859 427.8 1625670 3799.9 21:11:05.386 INFO ProgressMeter - NC_035783.1:24446862 428.0 1625950 3799.1 21:11:10.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:13.268 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:15.765 INFO ProgressMeter - NC_035783.1:24479710 428.2 1626170 3798.1 21:11:23.518 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:23.518 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:25.817 INFO ProgressMeter - NC_035783.1:24545337 428.3 1626560 3797.5 21:11:36.237 INFO ProgressMeter - NC_035783.1:24598840 428.5 1626940 3796.8 21:11:42.686 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:43.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:43.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:43.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:43.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:43.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:43.054 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:43.054 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:43.054 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:11:46.401 INFO ProgressMeter - NC_035783.1:24700014 428.7 1627670 3797.0 21:11:56.519 INFO ProgressMeter - NC_035783.1:24774889 428.8 1628250 3796.9 21:11:59.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:12:06.537 INFO ProgressMeter - NC_035783.1:24829380 429.0 1628620 3796.3 21:12:16.854 INFO ProgressMeter - NC_035783.1:24914820 429.2 1629300 3796.3 21:12:27.284 INFO ProgressMeter - NC_035783.1:24997290 429.4 1629880 3796.2 21:12:33.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:12:36.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:12:36.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:12:36.500 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:12:37.612 INFO ProgressMeter - NC_035783.1:25192803 429.5 1631260 3797.8 21:12:47.893 INFO ProgressMeter - NC_035783.1:25301039 429.7 1631980 3798.0 21:12:57.933 INFO ProgressMeter - NC_035783.1:25342111 429.9 1632280 3797.2 21:13:03.920 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:13:07.946 INFO ProgressMeter - NC_035783.1:25392609 430.0 1632660 3796.6 21:13:17.988 INFO ProgressMeter - NC_035783.1:25454942 430.2 1633140 3796.3 21:13:21.318 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:13:24.826 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:13:28.138 INFO ProgressMeter - NC_035783.1:25487153 430.4 1633370 3795.3 21:13:38.462 INFO ProgressMeter - NC_035783.1:25545136 430.5 1633790 3794.8 21:13:39.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:13:48.562 INFO ProgressMeter - NC_035783.1:25697960 430.7 1634960 3796.0 21:13:51.333 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:13:55.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:13:56.584 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:13:56.584 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:13:56.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:13:58.597 INFO ProgressMeter - NC_035783.1:25953985 430.9 1636410 3797.9 21:14:07.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:08.605 INFO ProgressMeter - NC_035783.1:26177053 431.0 1637860 3799.8 21:14:15.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:15.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:15.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:18.915 INFO ProgressMeter - NC_035783.1:26396944 431.2 1639320 3801.7 21:14:26.588 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:29.252 INFO ProgressMeter - NC_035783.1:26617296 431.4 1640780 3803.5 21:14:29.726 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:32.041 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:32.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:35.255 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:39.279 INFO ProgressMeter - NC_035783.1:26832865 431.6 1642170 3805.3 21:14:44.990 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:45.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:46.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:46.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:14:49.940 INFO ProgressMeter - NC_035783.1:26996760 431.7 1643320 3806.4 21:14:53.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:15:00.066 INFO ProgressMeter - NC_035783.1:27235639 431.9 1644880 3808.5 21:15:05.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:15:10.329 INFO ProgressMeter - NC_035783.1:27459042 432.1 1646400 3810.5 21:15:19.153 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:15:20.332 INFO ProgressMeter - NC_035783.1:27617439 432.2 1647360 3811.3 21:15:31.212 INFO ProgressMeter - NC_035783.1:27831492 432.4 1648620 3812.6 21:15:41.330 INFO ProgressMeter - NC_035783.1:27879254 432.6 1649010 3812.0 21:15:51.675 INFO ProgressMeter - NC_035783.1:27940669 432.8 1649480 3811.6 21:15:52.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:15:58.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:15:59.131 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:15:59.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:15:59.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:15:59.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:15:59.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:15:59.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:16:02.861 INFO ProgressMeter - NC_035783.1:28024578 432.9 1650070 3811.3 21:16:11.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:16:12.940 INFO ProgressMeter - NC_035783.1:28083270 433.1 1650500 3810.8 21:16:24.143 INFO ProgressMeter - NC_035783.1:28131214 433.3 1650880 3810.0 21:16:34.296 INFO ProgressMeter - NC_035783.1:28198171 433.5 1651410 3809.8 21:16:35.468 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:16:35.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:16:36.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:16:36.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:16:38.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:16:44.790 INFO ProgressMeter - NC_035783.1:28341563 433.6 1652490 3810.7 21:16:55.055 INFO ProgressMeter - NC_035783.1:28387857 433.8 1652830 3810.0 21:17:05.141 INFO ProgressMeter - NC_035783.1:28471133 434.0 1653490 3810.0 21:17:15.568 INFO ProgressMeter - NC_035783.1:28524940 434.2 1653940 3809.6 21:17:25.689 INFO ProgressMeter - NC_035783.1:28555062 434.3 1654180 3808.6 21:17:25.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:17:35.711 INFO ProgressMeter - NC_035783.1:28605855 434.5 1654550 3808.0 21:17:43.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:17:43.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:17:45.837 INFO ProgressMeter - NC_035783.1:28658254 434.7 1654920 3807.4 21:17:56.203 INFO ProgressMeter - NC_035783.1:28688363 434.8 1655150 3806.4 21:17:57.666 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:18:02.196 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:18:06.537 INFO ProgressMeter - NC_035783.1:28791586 435.0 1655890 3806.6 21:18:14.908 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:18:14.908 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:18:15.874 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:18:16.754 INFO ProgressMeter - NC_035783.1:28985389 435.2 1657170 3808.1 21:18:24.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:18:26.778 INFO ProgressMeter - NC_035783.1:29135615 435.3 1658180 3808.9 21:18:29.383 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:18:34.242 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:18:37.489 INFO ProgressMeter - NC_035783.1:29342587 435.5 1659570 3810.5 21:18:47.975 INFO ProgressMeter - NC_035783.1:29591379 435.7 1661260 3812.9 21:18:58.140 INFO ProgressMeter - NC_035783.1:29771206 435.9 1662490 3814.2 21:19:08.160 INFO ProgressMeter - NC_035783.1:29914408 436.0 1663520 3815.1 21:19:18.343 INFO ProgressMeter - NC_035783.1:29962988 436.2 1663910 3814.5 21:19:23.345 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:19:28.614 INFO ProgressMeter - NC_035783.1:30052756 436.4 1664600 3814.6 21:19:37.494 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:19:38.747 INFO ProgressMeter - NC_035783.1:30149332 436.5 1665330 3814.8 21:19:48.898 INFO ProgressMeter - NC_035783.1:30252538 436.7 1666160 3815.3 21:19:54.840 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:19:54.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:19:58.931 INFO ProgressMeter - NC_035783.1:30325416 436.9 1666690 3815.0 21:20:02.792 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:20:08.974 INFO ProgressMeter - NC_035783.1:30416638 437.0 1667410 3815.2 21:20:19.292 INFO ProgressMeter - NC_035783.1:30487881 437.2 1667920 3814.9 21:20:25.070 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:20:28.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:20:28.303 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:20:29.466 INFO ProgressMeter - NC_035783.1:30568938 437.4 1668510 3814.7 21:20:33.902 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:20:39.565 INFO ProgressMeter - NC_035783.1:30625613 437.6 1668950 3814.3 21:20:41.295 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:20:45.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:20:50.251 INFO ProgressMeter - NC_035783.1:30669783 437.7 1669300 3813.5 21:20:50.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:20:50.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:20:50.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:21:00.298 INFO ProgressMeter - NC_035783.1:30742349 437.9 1669870 3813.4 21:21:11.259 INFO ProgressMeter - NC_035783.1:30795919 438.1 1670270 3812.7 21:21:18.985 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:21:21.508 INFO ProgressMeter - NC_035783.1:30860722 438.3 1670700 3812.2 21:21:26.022 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:21:26.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:21:30.303 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:21:31.533 INFO ProgressMeter - NC_035783.1:31061240 438.4 1672050 3813.8 21:21:40.717 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:21:40.717 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:21:41.570 INFO ProgressMeter - NC_035783.1:31218502 438.6 1673200 3815.0 21:21:42.971 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:21:42.971 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:21:46.610 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:21:52.142 INFO ProgressMeter - NC_035783.1:31336210 438.8 1673990 3815.2 21:22:02.178 INFO ProgressMeter - NC_035783.1:31377602 438.9 1674330 3814.6 21:22:12.911 INFO ProgressMeter - NC_035783.1:31453758 439.1 1674900 3814.3 21:22:22.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:23.030 INFO ProgressMeter - NC_035783.1:31683495 439.3 1676410 3816.3 21:22:26.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:26.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:26.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:26.696 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:26.696 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:33.136 INFO ProgressMeter - NC_035783.1:31780870 439.4 1677080 3816.3 21:22:37.022 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:39.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:43.246 INFO ProgressMeter - NC_035783.1:31911972 439.6 1678040 3817.1 21:22:46.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:50.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:50.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:51.467 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:52.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:53.603 INFO ProgressMeter - NC_035783.1:32046990 439.8 1679040 3817.8 21:22:57.289 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:57.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:57.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:58.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:22:58.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:00.963 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:01.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:01.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:02.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:02.437 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:02.437 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:03.796 INFO ProgressMeter - NC_035783.1:32197587 440.0 1680160 3818.9 21:23:07.437 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:07.437 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:07.438 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:11.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:13.802 INFO ProgressMeter - NC_035783.1:32302247 440.1 1680970 3819.3 21:23:15.514 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:25.040 INFO ProgressMeter - NC_035783.1:32409830 440.3 1681840 3819.6 21:23:35.067 INFO ProgressMeter - NC_035783.1:32459435 440.5 1682230 3819.1 21:23:36.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:36.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:36.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:36.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:45.350 INFO ProgressMeter - NC_035783.1:32503161 440.7 1682560 3818.3 21:23:49.649 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:23:55.709 INFO ProgressMeter - NC_035783.1:32526857 440.8 1682720 3817.2 21:24:05.895 INFO ProgressMeter - NC_035783.1:32567603 441.0 1683040 3816.5 21:24:10.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:24:10.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:24:16.464 INFO ProgressMeter - NC_035783.1:32657898 441.2 1683710 3816.5 21:24:23.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:24:26.616 INFO ProgressMeter - NC_035783.1:32716706 441.3 1684160 3816.0 21:24:36.622 INFO ProgressMeter - NC_035783.1:32797258 441.5 1684790 3816.0 21:24:46.649 INFO ProgressMeter - NC_035783.1:32860572 441.7 1685290 3815.7 21:24:56.735 INFO ProgressMeter - NC_035783.1:32906908 441.8 1685560 3814.9 21:25:00.024 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:25:00.024 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:25:02.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:25:02.679 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:25:06.788 INFO ProgressMeter - NC_035783.1:33094305 442.0 1686830 3816.3 21:25:17.097 INFO ProgressMeter - NC_035783.1:33296799 442.2 1688170 3817.8 21:25:27.099 INFO ProgressMeter - NC_035783.1:33473671 442.3 1689450 3819.3 21:25:29.437 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:25:29.437 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:25:37.117 INFO ProgressMeter - NC_035783.1:33662753 442.5 1690720 3820.7 21:25:47.326 INFO ProgressMeter - NC_035783.1:33822423 442.7 1691870 3821.8 21:25:52.202 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:25:52.203 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:25:52.203 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:25:58.211 INFO ProgressMeter - NC_035783.1:33867666 442.9 1692190 3821.0 21:26:05.522 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:26:08.221 INFO ProgressMeter - NC_035783.1:34082898 443.0 1693550 3822.6 21:26:09.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:26:18.236 INFO ProgressMeter - NC_035783.1:34285114 443.2 1694900 3824.2 21:26:25.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:26:29.043 INFO ProgressMeter - NC_035783.1:34433888 443.4 1695930 3825.0 21:26:37.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:26:39.153 INFO ProgressMeter - NC_035783.1:34475515 443.5 1696270 3824.3 21:26:40.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:26:41.103 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:26:41.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:26:41.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:26:49.383 INFO ProgressMeter - NC_035783.1:34526240 443.7 1696660 3823.7 21:26:59.403 INFO ProgressMeter - NC_035783.1:34552827 443.9 1696860 3822.7 21:27:03.744 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:27:03.745 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:27:10.114 INFO ProgressMeter - NC_035783.1:34603953 444.1 1697270 3822.1 21:27:11.892 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:27:13.280 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:27:20.368 INFO ProgressMeter - NC_035783.1:34662820 444.2 1697730 3821.7 21:27:30.444 INFO ProgressMeter - NC_035783.1:34718879 444.4 1698150 3821.2 21:27:40.469 INFO ProgressMeter - NC_035783.1:34764085 444.6 1698500 3820.5 21:27:45.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:27:51.058 INFO ProgressMeter - NC_035783.1:34825554 444.7 1698980 3820.1 21:28:01.253 INFO ProgressMeter - NC_035783.1:34893454 444.9 1699440 3819.7 21:28:11.256 INFO ProgressMeter - NC_035783.1:34928160 445.1 1699690 3818.8 21:28:21.812 INFO ProgressMeter - NC_035783.1:34970263 445.3 1700050 3818.1 21:28:27.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:28:32.250 INFO ProgressMeter - NC_035783.1:35018374 445.4 1700400 3817.4 21:28:38.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:28:42.357 INFO ProgressMeter - NC_035783.1:35097890 445.6 1700980 3817.3 21:28:52.411 INFO ProgressMeter - NC_035783.1:35127961 445.8 1701200 3816.3 21:29:00.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:29:02.464 INFO ProgressMeter - NC_035783.1:35182279 445.9 1701590 3815.8 21:29:12.468 INFO ProgressMeter - NC_035783.1:35247867 446.1 1702060 3815.4 21:29:22.478 INFO ProgressMeter - NC_035783.1:35314746 446.3 1702550 3815.1 21:29:26.847 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:29:32.665 INFO ProgressMeter - NC_035783.1:35405370 446.4 1703140 3814.9 21:29:42.757 INFO ProgressMeter - NC_035783.1:35450208 446.6 1703500 3814.3 21:29:50.041 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:29:53.437 INFO ProgressMeter - NC_035783.1:35520679 446.8 1704070 3814.1 21:30:03.617 INFO ProgressMeter - NC_035783.1:35584056 447.0 1704540 3813.7 21:30:09.547 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:30:13.724 INFO ProgressMeter - NC_035783.1:35645088 447.1 1705020 3813.3 21:30:23.724 INFO ProgressMeter - NC_035783.1:35692543 447.3 1705400 3812.7 21:30:31.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:30:34.250 INFO ProgressMeter - NC_035783.1:35743865 447.5 1705800 3812.1 21:30:44.477 INFO ProgressMeter - NC_035783.1:35798901 447.6 1706220 3811.6 21:30:54.487 INFO ProgressMeter - NC_035783.1:35861382 447.8 1706700 3811.3 21:31:04.488 INFO ProgressMeter - NC_035783.1:35942925 448.0 1707320 3811.2 21:31:08.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:31:14.550 INFO ProgressMeter - NC_035783.1:36052963 448.1 1708030 3811.4 21:31:24.568 INFO ProgressMeter - NC_035783.1:36096648 448.3 1708370 3810.7 21:31:34.664 INFO ProgressMeter - NC_035783.1:36146193 448.5 1708730 3810.1 21:31:44.766 INFO ProgressMeter - NC_035783.1:36240380 448.6 1709420 3810.2 21:31:48.836 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:31:55.800 INFO ProgressMeter - NC_035783.1:36282474 448.8 1709750 3809.4 21:32:03.859 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:32:05.925 INFO ProgressMeter - NC_035783.1:36327806 449.0 1710090 3808.7 21:32:10.733 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:32:16.107 INFO ProgressMeter - NC_035783.1:36364932 449.2 1710380 3807.9 21:32:26.111 INFO ProgressMeter - NC_035783.1:36403115 449.3 1710680 3807.2 21:32:36.239 INFO ProgressMeter - NC_035783.1:36440879 449.5 1710960 3806.4 21:32:46.271 INFO ProgressMeter - NC_035783.1:36481730 449.7 1711280 3805.7 21:32:56.619 INFO ProgressMeter - NC_035783.1:36539945 449.8 1711730 3805.2 21:33:06.764 INFO ProgressMeter - NC_035783.1:36581105 450.0 1712040 3804.5 21:33:08.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:33:17.186 INFO ProgressMeter - NC_035783.1:36666886 450.2 1712650 3804.4 21:33:27.377 INFO ProgressMeter - NC_035783.1:36721466 450.4 1713100 3803.9 21:33:37.873 INFO ProgressMeter - NC_035783.1:36762904 450.5 1713420 3803.1 21:33:47.936 INFO ProgressMeter - NC_035783.1:36835518 450.7 1713950 3802.9 21:33:58.298 INFO ProgressMeter - NC_035783.1:36874158 450.9 1714250 3802.1 21:34:08.494 INFO ProgressMeter - NC_035783.1:36894305 451.0 1714390 3801.0 21:34:18.559 INFO ProgressMeter - NC_035783.1:36952252 451.2 1714860 3800.6 21:34:26.495 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:34:26.496 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:34:28.831 INFO ProgressMeter - NC_035783.1:37008351 451.4 1715280 3800.1 21:34:29.063 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:34:29.063 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:34:34.307 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:34:38.846 INFO ProgressMeter - NC_035783.1:37130245 451.5 1716120 3800.6 21:34:41.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:34:41.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:34:41.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:34:41.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:34:41.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:34:41.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:34:48.854 INFO ProgressMeter - NC_035783.1:37319999 451.7 1717330 3801.8 21:34:58.855 INFO ProgressMeter - NC_035783.1:37468799 451.9 1718330 3802.7 21:35:04.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:35:04.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:35:08.873 INFO ProgressMeter - NC_035783.1:37744685 452.0 1720210 3805.4 21:35:12.964 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:35:19.290 INFO ProgressMeter - NC_035783.1:37891534 452.2 1721180 3806.1 21:35:29.324 INFO ProgressMeter - NC_035783.1:38115376 452.4 1722710 3808.1 21:35:40.307 INFO ProgressMeter - NC_035783.1:38321524 452.6 1724060 3809.5 21:35:43.805 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:35:46.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:35:46.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:35:47.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:35:50.852 INFO ProgressMeter - NC_035783.1:38560667 452.7 1725620 3811.5 21:35:52.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:35:53.644 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:35:57.661 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:01.984 INFO ProgressMeter - NC_035783.1:38638936 452.9 1726240 3811.3 21:36:12.084 INFO ProgressMeter - NC_035783.1:38702214 453.1 1726650 3810.8 21:36:12.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:12.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:12.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:22.184 INFO ProgressMeter - NC_035783.1:38907398 453.3 1727980 3812.3 21:36:23.626 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:23.626 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:24.856 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:26.447 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:26.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:30.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:32.187 INFO ProgressMeter - NC_035783.1:39185288 453.4 1729880 3815.1 21:36:33.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:33.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:42.679 INFO ProgressMeter - NC_035783.1:39445416 453.6 1731560 3817.3 21:36:42.712 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:43.255 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:48.849 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:53.108 INFO ProgressMeter - NC_035783.1:39698786 453.8 1733200 3819.5 21:36:55.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:57.916 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:36:57.916 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:37:03.127 INFO ProgressMeter - NC_035783.1:39862392 453.9 1734290 3820.5 21:37:11.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:37:13.145 INFO ProgressMeter - NC_035783.1:40095785 454.1 1735810 3822.4 21:37:17.267 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:37:21.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:37:23.285 INFO ProgressMeter - NC_035783.1:40303161 454.3 1737190 3824.0 21:37:33.610 INFO ProgressMeter - NC_035783.1:40549452 454.5 1738900 3826.3 21:37:36.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:37:36.978 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:37:38.449 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:37:42.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:37:43.345 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:37:43.631 INFO ProgressMeter - NC_035783.1:40766617 454.6 1740270 3827.9 21:37:45.330 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:37:53.651 INFO ProgressMeter - NC_035783.1:40874489 454.8 1741030 3828.2 21:37:53.828 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:37:53.828 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:03.683 INFO ProgressMeter - NC_035783.1:40969795 455.0 1741670 3828.2 21:38:11.753 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:11.754 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:11.754 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:14.092 INFO ProgressMeter - NC_035783.1:41221308 455.1 1743340 3830.4 21:38:15.579 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:24.239 INFO ProgressMeter - NC_035783.1:41449098 455.3 1744850 3832.3 21:38:24.265 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:28.588 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:28.588 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:28.588 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:34.304 INFO ProgressMeter - NC_035783.1:41567358 455.5 1745680 3832.7 21:38:34.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:35.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:40.450 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:40.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:40.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:42.252 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:44.316 INFO ProgressMeter - NC_035783.1:41791241 455.6 1747220 3834.7 21:38:46.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:46.477 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:50.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:51.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:38:54.340 INFO ProgressMeter - NC_035783.1:41984665 455.8 1748460 3836.0 21:39:02.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:39:04.472 INFO ProgressMeter - NC_035783.1:42138155 456.0 1749430 3836.7 21:39:14.776 INFO ProgressMeter - NC_035783.1:42294330 456.1 1750540 3837.7 21:39:25.243 INFO ProgressMeter - NC_035783.1:42335668 456.3 1750890 3837.0 21:39:35.318 INFO ProgressMeter - NC_035783.1:42353612 456.5 1751030 3835.9 21:39:45.746 INFO ProgressMeter - NC_035783.1:42410992 456.7 1751480 3835.4 21:39:56.066 INFO ProgressMeter - NC_035783.1:42465909 456.8 1751910 3834.9 21:40:06.082 INFO ProgressMeter - NC_035783.1:42504732 457.0 1752180 3834.1 21:40:07.297 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:40:07.298 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:40:15.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:40:16.637 INFO ProgressMeter - NC_035783.1:42585136 457.2 1752830 3834.1 21:40:26.896 INFO ProgressMeter - NC_035783.1:42637352 457.3 1753230 3833.5 21:40:37.921 INFO ProgressMeter - NC_035783.1:42711745 457.5 1753800 3833.2 21:40:47.926 INFO ProgressMeter - NC_035783.1:42763005 457.7 1754180 3832.6 21:40:53.980 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:40:58.821 INFO ProgressMeter - NC_035783.1:42843786 457.9 1754840 3832.6 21:41:08.886 INFO ProgressMeter - NC_035783.1:42895603 458.0 1755250 3832.1 21:41:19.145 INFO ProgressMeter - NC_035783.1:42952730 458.2 1755650 3831.5 21:41:19.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:41:21.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:41:29.255 INFO ProgressMeter - NC_035783.1:43027509 458.4 1756160 3831.2 21:41:39.934 INFO ProgressMeter - NC_035783.1:43059389 458.6 1756400 3830.2 21:41:50.512 INFO ProgressMeter - NC_035783.1:43117283 458.7 1756890 3829.8 21:41:59.052 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:01.185 INFO ProgressMeter - NC_035783.1:43210033 458.9 1757620 3829.9 21:42:11.289 INFO ProgressMeter - NC_035783.1:43323785 459.1 1758330 3830.1 21:42:21.293 INFO ProgressMeter - NC_035783.1:43367995 459.3 1758690 3829.5 21:42:31.349 INFO ProgressMeter - NC_035783.1:43432183 459.4 1759190 3829.2 21:42:31.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:32.919 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:35.298 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:35.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:38.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:38.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:40.636 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:41.353 INFO ProgressMeter - NC_035783.1:43661142 459.6 1760840 3831.4 21:42:45.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:47.512 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:47.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:51.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:51.431 INFO ProgressMeter - NC_035783.1:43835284 459.8 1762010 3832.5 21:42:52.134 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:52.134 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:42:52.134 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:43:01.572 INFO ProgressMeter - NC_035783.1:44030310 459.9 1763290 3833.9 21:43:05.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:43:11.702 INFO ProgressMeter - NC_035783.1:44149184 460.1 1764060 3834.2 21:43:13.208 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:43:22.061 INFO ProgressMeter - NC_035783.1:44201741 460.3 1764460 3833.6 21:43:32.422 INFO ProgressMeter - NC_035783.1:44234370 460.4 1764720 3832.7 21:43:43.141 INFO ProgressMeter - NC_035783.1:44295637 460.6 1765190 3832.2 21:43:48.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:43:53.209 INFO ProgressMeter - NC_035783.1:44343595 460.8 1765570 3831.7 21:43:53.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:44:04.158 INFO ProgressMeter - NC_035783.1:44399135 461.0 1766010 3831.1 21:44:12.181 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:44:15.382 INFO ProgressMeter - NC_035783.1:44476780 461.2 1766630 3830.9 21:44:25.789 INFO ProgressMeter - NC_035783.1:44539067 461.3 1767110 3830.5 21:44:28.136 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:44:35.848 INFO ProgressMeter - NC_035783.1:44588409 461.5 1767500 3830.0 21:44:42.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:44:45.870 INFO ProgressMeter - NC_035783.1:44691259 461.7 1768310 3830.3 21:44:55.886 INFO ProgressMeter - NC_035783.1:44736957 461.8 1768650 3829.7 21:44:59.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:44:59.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:44:59.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:45:02.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:45:05.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:45:06.135 INFO ProgressMeter - NC_035783.1:44807135 462.0 1769210 3829.5 21:45:11.036 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:45:11.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:45:11.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:45:11.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:45:16.406 INFO ProgressMeter - NC_035783.1:44889864 462.2 1769820 3829.4 21:45:23.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:45:23.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:45:26.438 INFO ProgressMeter - NC_035783.1:44974015 462.3 1770460 3829.4 21:45:36.735 INFO ProgressMeter - NC_035783.1:45021589 462.5 1770840 3828.8 21:45:47.870 INFO ProgressMeter - NC_035783.1:45091586 462.7 1771400 3828.5 21:45:49.162 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:45:58.073 INFO ProgressMeter - NC_035783.1:45178296 462.9 1772110 3828.6 21:46:05.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:46:08.356 INFO ProgressMeter - NC_035783.1:45309136 463.0 1773090 3829.3 21:46:18.412 INFO ProgressMeter - NC_035783.1:45380210 463.2 1773640 3829.1 21:46:20.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:46:20.136 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:46:24.463 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:46:28.648 INFO ProgressMeter - NC_035783.1:45455569 463.4 1774270 3829.0 21:46:38.749 INFO ProgressMeter - NC_035783.1:45551674 463.5 1775070 3829.4 21:46:39.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:46:48.778 INFO ProgressMeter - NC_035783.1:45672439 463.7 1776040 3830.1 21:46:58.781 INFO ProgressMeter - NC_035783.1:45859245 463.9 1777560 3832.0 21:46:59.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:46:59.271 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:46:59.271 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:47:08.783 INFO ProgressMeter - NC_035783.1:45961813 464.0 1778370 3832.3 21:47:18.945 INFO ProgressMeter - NC_035783.1:46072245 464.2 1779290 3832.9 21:47:19.231 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:47:27.989 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:47:28.955 INFO ProgressMeter - NC_035783.1:46276589 464.4 1780950 3835.1 21:47:29.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:47:38.982 INFO ProgressMeter - NC_035783.1:46425997 464.5 1782010 3836.0 21:47:49.455 INFO ProgressMeter - NC_035783.1:46474030 464.7 1782370 3835.4 21:47:49.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:47:52.790 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:47:59.491 INFO ProgressMeter - NC_035783.1:46566818 464.9 1783050 3835.4 21:48:10.288 INFO ProgressMeter - NC_035783.1:46641257 465.1 1783670 3835.3 21:48:11.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:48:20.367 INFO ProgressMeter - NC_035783.1:46699231 465.2 1784140 3834.9 21:48:22.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:48:22.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:48:27.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:48:30.884 INFO ProgressMeter - NC_035783.1:46738411 465.4 1784440 3834.1 21:48:40.976 INFO ProgressMeter - NC_035783.1:46796251 465.6 1784910 3833.7 21:48:51.344 INFO ProgressMeter - NC_035783.1:46871544 465.8 1785480 3833.5 21:48:55.166 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:01.363 INFO ProgressMeter - NC_035783.1:47012719 465.9 1786330 3834.0 21:49:06.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:09.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:11.632 INFO ProgressMeter - NC_035783.1:47163224 466.1 1787360 3834.8 21:49:19.678 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:21.636 INFO ProgressMeter - NC_035783.1:47340419 466.3 1788690 3836.3 21:49:30.329 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:30.330 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:31.689 INFO ProgressMeter - NC_035783.1:47445913 466.4 1789580 3836.8 21:49:32.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:32.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:32.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:41.853 INFO ProgressMeter - NC_035783.1:47568504 466.6 1790630 3837.7 21:49:45.318 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:45.860 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:45.860 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:45.860 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:45.861 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:46.024 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:48.108 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:50.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:51.874 INFO ProgressMeter - NC_035783.1:47799687 466.8 1792230 3839.7 21:49:53.404 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:53.404 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:53.426 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:53.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:49:53.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:50:02.382 INFO ProgressMeter - NC_035783.1:48022275 466.9 1793730 3841.5 21:50:12.414 INFO ProgressMeter - NC_035783.1:48069738 467.1 1794090 3840.9 21:50:22.509 INFO ProgressMeter - NC_035783.1:48131903 467.3 1794610 3840.6 21:50:25.726 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:50:25.726 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:50:25.726 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:50:30.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:50:32.558 INFO ProgressMeter - NC_035783.1:48228285 467.4 1795370 3840.9 21:50:33.042 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:50:42.573 INFO ProgressMeter - NC_035783.1:48383202 467.6 1796630 3842.2 21:50:43.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:50:45.276 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:50:52.588 INFO ProgressMeter - NC_035783.1:48529728 467.8 1797820 3843.4 21:50:59.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:02.675 INFO ProgressMeter - NC_035783.1:48658276 467.9 1798810 3844.1 21:51:04.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:05.419 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:06.438 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:06.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:06.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:07.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:12.689 INFO ProgressMeter - NC_035783.1:48895161 468.1 1800300 3845.9 21:51:22.709 INFO ProgressMeter - NC_035783.1:48974132 468.3 1800860 3845.7 21:51:24.772 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:24.772 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:32.756 INFO ProgressMeter - NC_035783.1:49059551 468.4 1801540 3845.8 21:51:37.967 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:42.895 INFO ProgressMeter - NC_035783.1:49132790 468.6 1802100 3845.6 21:51:46.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:48.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:51:52.896 INFO ProgressMeter - NC_035783.1:49234213 468.8 1802860 3845.9 21:51:53.351 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:52:02.908 INFO ProgressMeter - NC_035783.1:49365728 468.9 1803580 3846.0 21:52:09.476 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:52:13.073 INFO ProgressMeter - NC_035783.1:49440648 469.1 1804110 3845.8 21:52:24.141 INFO ProgressMeter - NC_035783.1:49487035 469.3 1804480 3845.1 21:52:26.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:52:34.845 INFO ProgressMeter - NC_035783.1:49674761 469.5 1805550 3845.9 21:52:38.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:52:45.021 INFO ProgressMeter - NC_035783.1:49738105 469.6 1806000 3845.5 21:52:49.659 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:52:49.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:52:55.991 INFO ProgressMeter - NC_035783.1:49872795 469.8 1806990 3846.1 21:52:59.504 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:52:59.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:53:03.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:53:06.186 INFO ProgressMeter - NC_035783.1:49931613 470.0 1807410 3845.6 21:53:09.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:53:09.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:53:16.642 INFO ProgressMeter - NC_035783.1:49985018 470.2 1807810 3845.0 21:53:20.925 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:53:24.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:53:27.179 INFO ProgressMeter - NC_035783.1:50056545 470.3 1808290 3844.6 21:53:36.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:53:36.201 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:53:37.184 INFO ProgressMeter - NC_035783.1:50108763 470.5 1808670 3844.0 21:53:39.857 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:53:47.529 INFO ProgressMeter - NC_035783.1:50156308 470.7 1809050 3843.4 21:53:53.826 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:53:53.826 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:53:57.843 INFO ProgressMeter - NC_035783.1:50223808 470.9 1809580 3843.1 21:54:07.850 INFO ProgressMeter - NC_035783.1:50292219 471.0 1810110 3842.9 21:54:08.464 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:54:10.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:54:18.030 INFO ProgressMeter - NC_035783.1:50356953 471.2 1810580 3842.5 21:54:22.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:54:26.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:54:28.308 INFO ProgressMeter - NC_035783.1:50444591 471.4 1811190 3842.4 21:54:38.434 INFO ProgressMeter - NC_035783.1:50500713 471.5 1811640 3842.0 21:54:49.039 INFO ProgressMeter - NC_035783.1:50594482 471.7 1812330 3842.0 21:54:56.382 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:54:56.595 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:54:59.302 INFO ProgressMeter - NC_035783.1:50676690 471.9 1813000 3842.0 21:55:09.540 INFO ProgressMeter - NC_035783.1:50741463 472.1 1813490 3841.7 21:55:19.942 INFO ProgressMeter - NC_035783.1:50816215 472.2 1814060 3841.5 21:55:28.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:55:30.511 INFO ProgressMeter - NC_035783.1:50906074 472.4 1814680 3841.4 21:55:35.892 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:55:40.186 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:55:40.533 INFO ProgressMeter - NC_035783.1:50976237 472.6 1815260 3841.2 21:55:51.123 INFO ProgressMeter - NC_035783.1:51034631 472.7 1815700 3840.7 21:55:53.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:56:01.416 INFO ProgressMeter - NC_035783.1:51113547 472.9 1816310 3840.6 21:56:07.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:56:07.406 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:56:11.487 INFO ProgressMeter - NC_035783.1:51201677 473.1 1816940 3840.6 21:56:12.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:56:12.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:56:14.733 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:56:21.608 INFO ProgressMeter - NC_035783.1:51315186 473.3 1817790 3841.0 21:56:31.623 INFO ProgressMeter - NC_035783.1:51353273 473.4 1818030 3840.2 21:56:41.635 INFO ProgressMeter - NC_035783.1:51397510 473.6 1818370 3839.5 21:56:51.716 INFO ProgressMeter - NC_035783.1:51422001 473.8 1818560 3838.6 21:57:01.754 INFO ProgressMeter - NC_035783.1:51485590 473.9 1819010 3838.2 21:57:05.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:57:05.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:57:06.394 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:57:06.407 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:57:08.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:57:11.787 INFO ProgressMeter - NC_035783.1:51580849 474.1 1819620 3838.1 21:57:21.877 INFO ProgressMeter - NC_035783.1:51623541 474.3 1819940 3837.4 21:57:22.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:57:26.330 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:57:28.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:57:32.078 INFO ProgressMeter - NC_035783.1:51706105 474.4 1820610 3837.5 21:57:33.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:57:33.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:57:42.857 INFO ProgressMeter - NC_035783.1:51759653 474.6 1821040 3836.9 21:57:52.994 INFO ProgressMeter - NC_035783.1:51800848 474.8 1821330 3836.2 21:57:56.462 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:57:58.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:58:03.033 INFO ProgressMeter - NC_035783.1:51840884 474.9 1821640 3835.5 21:58:13.140 INFO ProgressMeter - NC_035783.1:51886262 475.1 1821970 3834.8 21:58:23.294 INFO ProgressMeter - NC_035783.1:51938215 475.3 1822350 3834.2 21:58:33.765 INFO ProgressMeter - NC_035783.1:51975096 475.5 1822630 3833.4 21:58:44.276 INFO ProgressMeter - NC_035783.1:52024654 475.6 1823000 3832.8 21:58:50.953 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:58:50.953 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:58:54.394 INFO ProgressMeter - NC_035783.1:52072281 475.8 1823380 3832.2 21:58:54.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:59:00.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:59:00.518 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:59:04.432 INFO ProgressMeter - NC_035783.1:52139829 476.0 1823890 3831.9 21:59:14.445 INFO ProgressMeter - NC_035783.1:52194065 476.1 1824320 3831.5 21:59:24.492 INFO ProgressMeter - NC_035783.1:52244367 476.3 1824680 3830.9 21:59:27.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:59:28.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:59:32.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 21:59:34.607 INFO ProgressMeter - NC_035783.1:52312414 476.5 1825220 3830.7 21:59:44.954 INFO ProgressMeter - NC_035783.1:52377971 476.6 1825730 3830.4 21:59:55.259 INFO ProgressMeter - NC_035783.1:52446758 476.8 1826250 3830.1 22:00:06.269 INFO ProgressMeter - NC_035783.1:52521259 477.0 1826820 3829.8 22:00:07.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:00:14.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:00:15.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:00:15.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:00:16.329 INFO ProgressMeter - NC_035783.1:52578544 477.2 1827280 3829.4 22:00:22.674 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:00:26.403 INFO ProgressMeter - NC_035783.1:52703927 477.3 1828240 3830.1 22:00:29.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:00:36.450 INFO ProgressMeter - NC_035783.1:52812907 477.5 1829140 3830.6 22:00:42.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:00:42.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:00:46.701 INFO ProgressMeter - NC_035783.1:52861793 477.7 1829470 3830.0 22:00:47.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:00:56.708 INFO ProgressMeter - NC_035783.1:52954894 477.8 1830020 3829.8 22:00:57.455 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:01:06.958 INFO ProgressMeter - NC_035783.1:53022893 478.0 1830540 3829.5 22:01:10.643 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:01:13.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:01:13.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:01:13.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:01:13.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:01:18.479 INFO ProgressMeter - NC_035783.1:53054442 478.2 1830780 3828.5 22:01:28.503 INFO ProgressMeter - NC_035783.1:53102289 478.4 1831160 3827.9 22:01:38.964 INFO ProgressMeter - NC_035783.1:53150116 478.5 1831550 3827.3 22:01:48.980 INFO ProgressMeter - NC_035783.1:53209515 478.7 1831990 3826.9 22:01:54.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:01:54.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:01:54.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:01:56.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:01:59.126 INFO ProgressMeter - NC_035783.1:53371855 478.9 1833190 3828.1 22:02:09.136 INFO ProgressMeter - NC_035783.1:53577272 479.0 1834640 3829.8 22:02:09.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:02:10.826 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:02:15.854 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:02:19.202 INFO ProgressMeter - NC_035783.1:53750821 479.2 1835790 3830.8 22:02:27.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:02:29.211 INFO ProgressMeter - NC_035783.1:54015942 479.4 1837470 3833.0 22:02:33.448 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:02:34.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:02:39.459 INFO ProgressMeter - NC_035783.1:54154229 479.6 1838360 3833.5 22:02:49.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:02:49.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:02:49.542 INFO ProgressMeter - NC_035783.1:54270358 479.7 1839170 3833.8 22:02:57.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:02:58.274 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:02:59.581 INFO ProgressMeter - NC_035783.1:54536203 479.9 1840960 3836.2 22:03:04.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:05.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:10.230 INFO ProgressMeter - NC_035783.1:54746827 480.1 1842430 3837.9 22:03:20.760 INFO ProgressMeter - NC_035783.1:54939481 480.2 1843690 3839.1 22:03:22.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:31.113 INFO ProgressMeter - NC_035783.1:55151193 480.4 1845050 3840.5 22:03:31.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:41.549 INFO ProgressMeter - NC_035783.1:55255406 480.6 1845780 3840.7 22:03:43.136 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:48.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:48.307 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:48.504 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:49.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:51.842 INFO ProgressMeter - NC_035783.1:55327556 480.8 1846410 3840.6 22:03:54.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:54.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:54.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:54.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:03:59.389 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:01.924 INFO ProgressMeter - NC_035783.1:55409311 480.9 1847060 3840.6 22:04:11.940 INFO ProgressMeter - NC_035783.1:55464803 481.1 1847500 3840.2 22:04:15.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:22.098 INFO ProgressMeter - NC_035783.1:55511460 481.3 1847850 3839.6 22:04:32.239 INFO ProgressMeter - NC_035783.1:55587068 481.4 1848470 3839.5 22:04:34.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:36.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:36.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:40.336 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:42.242 INFO ProgressMeter - NC_035783.1:55806591 481.6 1849950 3841.3 22:04:44.463 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:47.403 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:49.267 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:50.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:52.363 INFO ProgressMeter - NC_035783.1:56001063 481.8 1851200 3842.5 22:04:52.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:52.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:52.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:53.520 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:04:53.536 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:02.380 INFO ProgressMeter - NC_035783.1:56223201 481.9 1852730 3844.4 22:05:02.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:06.518 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:08.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:09.485 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:12.535 INFO ProgressMeter - NC_035783.1:56400086 482.1 1853860 3845.3 22:05:16.790 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:22.578 INFO ProgressMeter - NC_035783.1:56462685 482.3 1854330 3845.0 22:05:24.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:24.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:24.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:33.359 INFO ProgressMeter - NC_035783.1:56554432 482.5 1854950 3844.8 22:05:34.527 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:43.478 INFO ProgressMeter - NC_035783.1:56620376 482.6 1855470 3844.6 22:05:43.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:43.647 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:47.748 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:47.749 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:05:53.829 INFO ProgressMeter - NC_035783.1:56679745 482.8 1855970 3844.2 22:06:03.871 INFO ProgressMeter - NC_035783.1:56757322 483.0 1856620 3844.3 22:06:05.822 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:06:05.822 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:06:12.791 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:06:14.704 INFO ProgressMeter - NC_035783.1:56817213 483.1 1857050 3843.7 22:06:24.617 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:06:24.753 INFO ProgressMeter - NC_035783.1:56884924 483.3 1857540 3843.4 22:06:35.108 INFO ProgressMeter - NC_035783.1:56929322 483.5 1857880 3842.7 22:06:39.116 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:06:45.751 INFO ProgressMeter - NC_035783.1:56945631 483.7 1858000 3841.6 22:06:55.984 INFO ProgressMeter - NC_035783.1:56992637 483.8 1858360 3840.9 22:07:06.348 INFO ProgressMeter - NC_035783.1:57073902 484.0 1859050 3841.0 22:07:13.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:07:16.369 INFO ProgressMeter - NC_035783.1:57133292 484.2 1859510 3840.6 22:07:26.521 INFO ProgressMeter - NC_035783.1:57214137 484.3 1860090 3840.5 22:07:27.311 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:07:36.610 INFO ProgressMeter - NC_035783.1:57265785 484.5 1860490 3840.0 22:07:46.712 INFO ProgressMeter - NC_035783.1:57296670 484.7 1860730 3839.1 22:07:56.771 INFO ProgressMeter - NC_035783.1:57353368 484.8 1861160 3838.7 22:08:06.883 INFO ProgressMeter - NC_035783.1:57389111 485.0 1861440 3837.9 22:08:08.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:08:10.836 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:08:12.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:08:17.281 INFO ProgressMeter - NC_035783.1:57442858 485.2 1861850 3837.4 22:08:27.298 INFO ProgressMeter - NC_035783.1:57484550 485.4 1862200 3836.8 22:08:28.572 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:08:28.572 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:08:34.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:08:34.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:08:34.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:08:37.305 INFO ProgressMeter - NC_035783.1:57627546 485.5 1863120 3837.4 22:08:41.748 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:08:47.325 INFO ProgressMeter - NC_035783.1:57812999 485.7 1864380 3838.7 22:08:57.900 INFO ProgressMeter - NC_035783.1:57900510 485.9 1864970 3838.5 22:09:08.188 INFO ProgressMeter - NC_035783.1:57939418 486.0 1865260 3837.7 22:09:09.931 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:09:18.273 INFO ProgressMeter - NC_035783.1:58010499 486.2 1865870 3837.7 22:09:25.128 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:09:25.266 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:09:29.474 INFO ProgressMeter - NC_035783.1:58143902 486.4 1866780 3838.1 22:09:30.377 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:09:35.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:09:39.514 INFO ProgressMeter - NC_035783.1:58251309 486.6 1867540 3838.3 22:09:47.184 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:09:47.184 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:09:49.664 INFO ProgressMeter - NC_035783.1:58513591 486.7 1869400 3840.8 22:09:55.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:09:55.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:09:55.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:09:55.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:00.250 INFO ProgressMeter - NC_035783.1:58663683 486.9 1870400 3841.4 22:10:00.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:00.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:10.254 INFO ProgressMeter - NC_035783.1:58895562 487.1 1872020 3843.5 22:10:11.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:16.533 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:16.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:20.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:20.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:20.492 INFO ProgressMeter - NC_035783.1:59141320 487.2 1873720 3845.6 22:10:30.514 INFO ProgressMeter - NC_035783.1:59340932 487.4 1875020 3847.0 22:10:31.574 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:32.733 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:35.916 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:41.520 INFO ProgressMeter - NC_035783.1:59518370 487.6 1876190 3847.9 22:10:43.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:43.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:43.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:43.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:10:51.533 INFO ProgressMeter - NC_035783.1:59678093 487.8 1877290 3848.8 22:10:52.463 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:11:02.854 INFO ProgressMeter - NC_035784.1:119327 487.9 1878070 3849.0 22:11:03.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:11:07.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:11:09.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:11:12.863 INFO ProgressMeter - NC_035784.1:282282 488.1 1879120 3849.8 22:11:23.238 INFO ProgressMeter - NC_035784.1:451885 488.3 1880290 3850.8 22:11:30.947 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:11:33.242 INFO ProgressMeter - NC_035784.1:634819 488.4 1881420 3851.8 22:11:43.260 INFO ProgressMeter - NC_035784.1:688046 488.6 1881780 3851.2 22:11:45.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:11:53.303 INFO ProgressMeter - NC_035784.1:790288 488.8 1882460 3851.3 22:11:58.280 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:11:58.280 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:11:58.280 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:12:03.681 INFO ProgressMeter - NC_035784.1:860477 489.0 1882950 3851.0 22:12:14.094 INFO ProgressMeter - NC_035784.1:890820 489.1 1883200 3850.1 22:12:15.626 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:12:15.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:12:15.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:12:15.674 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:12:24.338 INFO ProgressMeter - NC_035784.1:921742 489.3 1883420 3849.2 22:12:24.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:12:24.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:12:34.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:12:35.063 INFO ProgressMeter - NC_035784.1:981134 489.5 1883840 3848.7 22:12:36.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:12:36.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:12:45.300 INFO ProgressMeter - NC_035784.1:1030271 489.7 1884210 3848.1 22:12:55.711 INFO ProgressMeter - NC_035784.1:1055443 489.8 1884400 3847.1 22:13:06.005 INFO ProgressMeter - NC_035784.1:1128225 490.0 1884930 3846.8 22:13:11.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:16.741 INFO ProgressMeter - NC_035784.1:1254566 490.2 1885580 3846.8 22:13:16.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:16.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:16.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:16.772 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:16.772 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:26.874 INFO ProgressMeter - NC_035784.1:1393405 490.3 1886420 3847.1 22:13:26.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:26.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:27.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:31.070 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:31.070 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:32.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:36.877 INFO ProgressMeter - NC_035784.1:1543349 490.5 1887390 3847.8 22:13:40.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:42.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:42.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:42.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:42.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:42.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:42.365 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:46.467 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:46.939 INFO ProgressMeter - NC_035784.1:1683083 490.7 1888320 3848.4 22:13:46.987 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:46.987 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:47.464 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:47.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:48.184 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:48.258 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:48.258 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:48.258 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:53.298 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:56.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:13:57.371 INFO ProgressMeter - NC_035784.1:1808527 490.9 1889070 3848.6 22:14:07.572 INFO ProgressMeter - NC_035784.1:1844568 491.0 1889310 3847.7 22:14:14.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:14:17.591 INFO ProgressMeter - NC_035784.1:1892694 491.2 1889670 3847.1 22:14:27.835 INFO ProgressMeter - NC_035784.1:1931785 491.4 1889990 3846.5 22:14:38.624 INFO ProgressMeter - NC_035784.1:1991561 491.5 1890490 3846.1 22:14:48.657 INFO ProgressMeter - NC_035784.1:2061878 491.7 1891000 3845.8 22:14:58.899 INFO ProgressMeter - NC_035784.1:2128839 491.9 1891450 3845.4 22:15:08.949 INFO ProgressMeter - NC_035784.1:2183584 492.0 1891820 3844.8 22:15:13.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:15:13.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:15:13.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:15:13.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:15:15.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:15:18.972 INFO ProgressMeter - NC_035784.1:2268080 492.2 1892460 3844.8 22:15:19.659 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:15:20.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:15:20.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:15:20.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:15:20.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:15:29.036 INFO ProgressMeter - NC_035784.1:2303674 492.4 1892760 3844.1 22:15:39.132 INFO ProgressMeter - NC_035784.1:2341240 492.5 1893070 3843.4 22:15:49.988 INFO ProgressMeter - NC_035784.1:2415633 492.7 1893570 3843.0 22:15:50.333 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:15:50.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:15:52.070 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:16:00.002 INFO ProgressMeter - NC_035784.1:2509385 492.9 1894130 3842.9 22:16:09.783 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:16:10.051 INFO ProgressMeter - NC_035784.1:2555008 493.1 1894500 3842.3 22:16:14.006 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:16:18.671 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:16:20.374 INFO ProgressMeter - NC_035784.1:2615497 493.2 1894920 3841.8 22:16:20.954 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:16:30.581 INFO ProgressMeter - NC_035784.1:2662907 493.4 1895270 3841.2 22:16:40.950 INFO ProgressMeter - NC_035784.1:2714940 493.6 1895650 3840.6 22:16:41.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:16:50.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:16:51.354 INFO ProgressMeter - NC_035784.1:2762470 493.8 1896040 3840.1 22:17:01.512 INFO ProgressMeter - NC_035784.1:2827174 493.9 1896550 3839.8 22:17:09.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:17:10.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:17:11.617 INFO ProgressMeter - NC_035784.1:2890631 494.1 1897010 3839.4 22:17:21.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:17:21.689 INFO ProgressMeter - NC_035784.1:2977159 494.3 1897700 3839.5 22:17:24.837 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:17:24.837 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:17:31.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:17:31.998 INFO ProgressMeter - NC_035784.1:3041000 494.4 1898180 3839.1 22:17:42.276 INFO ProgressMeter - NC_035784.1:3101424 494.6 1898660 3838.8 22:17:44.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:17:52.328 INFO ProgressMeter - NC_035784.1:3154333 494.8 1899070 3838.3 22:18:02.345 INFO ProgressMeter - NC_035784.1:3189823 494.9 1899350 3837.6 22:18:03.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:18:03.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:18:08.920 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:18:08.920 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:18:08.920 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:18:08.920 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:18:08.920 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:18:13.240 INFO ProgressMeter - NC_035784.1:3277322 495.1 1899990 3837.5 22:18:19.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:18:19.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:18:23.373 INFO ProgressMeter - NC_035784.1:3327786 495.3 1900370 3836.9 22:18:33.395 INFO ProgressMeter - NC_035784.1:3406062 495.5 1900980 3836.9 22:18:43.292 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:18:43.809 INFO ProgressMeter - NC_035784.1:3456756 495.6 1901410 3836.4 22:18:53.765 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:18:54.135 INFO ProgressMeter - NC_035784.1:3518116 495.8 1901860 3836.0 22:19:04.229 INFO ProgressMeter - NC_035784.1:3584972 496.0 1902410 3835.8 22:19:15.021 INFO ProgressMeter - NC_035784.1:3636363 496.1 1902810 3835.2 22:19:17.483 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:19:19.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:19:19.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:19:19.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:19:19.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:19:19.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:19:25.837 INFO ProgressMeter - NC_035784.1:3680450 496.3 1903110 3834.4 22:19:36.076 INFO ProgressMeter - NC_035784.1:3721450 496.5 1903420 3833.7 22:19:46.103 INFO ProgressMeter - NC_035784.1:3769694 496.7 1903770 3833.1 22:19:56.128 INFO ProgressMeter - NC_035784.1:3826455 496.8 1904210 3832.7 22:20:00.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:20:06.484 INFO ProgressMeter - NC_035784.1:3898462 497.0 1904750 3832.5 22:20:16.918 INFO ProgressMeter - NC_035784.1:3951111 497.2 1905180 3832.0 22:20:26.986 INFO ProgressMeter - NC_035784.1:3991110 497.3 1905450 3831.2 22:20:37.024 INFO ProgressMeter - NC_035784.1:4050225 497.5 1905900 3830.9 22:20:42.001 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:20:42.001 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:20:47.045 INFO ProgressMeter - NC_035784.1:4115303 497.7 1906410 3830.6 22:20:53.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:20:53.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:20:57.049 INFO ProgressMeter - NC_035784.1:4180488 497.8 1906930 3830.4 22:20:59.134 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:01.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:03.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:07.381 INFO ProgressMeter - NC_035784.1:4332873 498.0 1907780 3830.7 22:21:17.594 INFO ProgressMeter - NC_035784.1:4385382 498.2 1908180 3830.2 22:21:22.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:22.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:22.800 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:24.143 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:24.143 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:24.143 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:25.332 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:25.333 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:27.607 INFO ProgressMeter - NC_035784.1:4560358 498.4 1909510 3831.6 22:21:29.105 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:30.788 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:32.644 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:33.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:33.849 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:34.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:34.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:37.633 INFO ProgressMeter - NC_035784.1:4717986 498.5 1910610 3832.5 22:21:38.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:41.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:47.922 INFO ProgressMeter - NC_035784.1:4843270 498.7 1911590 3833.2 22:21:48.073 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:48.073 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:58.206 INFO ProgressMeter - NC_035784.1:4955421 498.9 1912430 3833.6 22:21:58.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:58.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:21:59.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:00.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:00.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:04.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:05.534 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:05.534 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:05.534 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:08.355 INFO ProgressMeter - NC_035784.1:5102591 499.0 1913530 3834.5 22:22:18.477 INFO ProgressMeter - NC_035784.1:5143353 499.2 1913850 3833.8 22:22:21.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:28.543 INFO ProgressMeter - NC_035784.1:5198444 499.4 1914280 3833.4 22:22:38.546 INFO ProgressMeter - NC_035784.1:5245769 499.5 1914620 3832.8 22:22:42.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:42.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:43.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:43.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:43.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:43.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:43.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:48.765 INFO ProgressMeter - NC_035784.1:5319545 499.7 1915150 3832.5 22:22:57.859 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:57.860 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:58.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:22:58.857 INFO ProgressMeter - NC_035784.1:5361423 499.9 1915480 3831.9 22:23:08.869 INFO ProgressMeter - NC_035784.1:5427977 500.0 1915980 3831.6 22:23:17.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:23:18.875 INFO ProgressMeter - NC_035784.1:5791734 500.2 1918080 3834.5 22:23:18.993 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:23:19.172 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:23:20.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:23:21.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:23:21.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:23:24.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:23:25.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:23:29.084 INFO ProgressMeter - NC_035784.1:5976589 500.4 1919340 3835.8 22:23:39.087 INFO ProgressMeter - NC_035784.1:6186519 500.5 1920750 3837.3 22:23:49.726 INFO ProgressMeter - NC_035784.1:6396974 500.7 1922160 3838.8 22:23:54.337 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:23:54.847 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:23:59.976 INFO ProgressMeter - NC_035784.1:6623702 500.9 1923850 3840.8 22:24:03.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:24:09.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:24:09.400 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:24:09.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:24:09.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:24:09.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:24:10.384 INFO ProgressMeter - NC_035784.1:6802427 501.1 1924860 3841.5 22:24:12.519 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:24:18.292 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:24:18.292 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:24:20.691 INFO ProgressMeter - NC_035784.1:6987783 501.2 1926110 3842.7 22:24:30.895 INFO ProgressMeter - NC_035784.1:7217987 501.4 1927480 3844.1 22:24:39.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:24:41.046 INFO ProgressMeter - NC_035784.1:7274910 501.6 1927840 3843.5 22:24:51.074 INFO ProgressMeter - NC_035784.1:7330491 501.7 1928260 3843.1 22:24:54.718 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:25:01.402 INFO ProgressMeter - NC_035784.1:7377143 501.9 1928640 3842.5 22:25:06.211 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:25:06.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:25:11.496 INFO ProgressMeter - NC_035784.1:7432572 502.1 1929050 3842.1 22:25:14.131 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:25:21.606 INFO ProgressMeter - NC_035784.1:7500588 502.3 1929570 3841.8 22:25:31.699 INFO ProgressMeter - NC_035784.1:7586242 502.4 1930270 3841.9 22:25:41.977 INFO ProgressMeter - NC_035784.1:7683046 502.6 1931080 3842.2 22:25:52.449 INFO ProgressMeter - NC_035784.1:7735546 502.8 1931520 3841.8 22:25:54.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:25:54.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:26:02.571 INFO ProgressMeter - NC_035784.1:7811136 502.9 1932130 3841.7 22:26:05.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:26:12.805 INFO ProgressMeter - NC_035784.1:7884305 503.1 1932640 3841.4 22:26:22.855 INFO ProgressMeter - NC_035784.1:7948179 503.3 1933170 3841.2 22:26:26.297 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:26:33.005 INFO ProgressMeter - NC_035784.1:8039201 503.4 1933870 3841.3 22:26:43.431 INFO ProgressMeter - NC_035784.1:8079670 503.6 1934180 3840.6 22:26:53.732 INFO ProgressMeter - NC_035784.1:8122793 503.8 1934520 3839.9 22:26:53.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:26:53.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:27:03.849 INFO ProgressMeter - NC_035784.1:8191565 504.0 1935060 3839.7 22:27:06.392 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:27:07.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:27:07.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:27:07.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:27:07.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:27:14.049 INFO ProgressMeter - NC_035784.1:8257669 504.1 1935560 3839.4 22:27:14.931 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:27:24.331 INFO ProgressMeter - NC_035784.1:8315720 504.3 1936020 3839.0 22:27:31.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:27:34.553 INFO ProgressMeter - NC_035784.1:8381610 504.5 1936520 3838.7 22:27:44.633 INFO ProgressMeter - NC_035784.1:8509829 504.6 1937530 3839.4 22:27:54.983 INFO ProgressMeter - NC_035784.1:8562367 504.8 1937940 3838.9 22:28:05.069 INFO ProgressMeter - NC_035784.1:8648662 505.0 1938640 3839.0 22:28:08.676 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:28:09.330 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:28:15.450 INFO ProgressMeter - NC_035784.1:8732315 505.2 1939260 3839.0 22:28:25.536 INFO ProgressMeter - NC_035784.1:8765137 505.3 1939520 3838.2 22:28:36.349 INFO ProgressMeter - NC_035784.1:8827365 505.5 1940020 3837.8 22:28:38.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:28:38.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:28:46.512 INFO ProgressMeter - NC_035784.1:8870747 505.7 1940360 3837.2 22:28:49.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:28:56.651 INFO ProgressMeter - NC_035784.1:8938985 505.8 1940890 3837.0 22:28:58.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:01.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:01.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:06.706 INFO ProgressMeter - NC_035784.1:9012871 506.0 1941450 3836.8 22:29:16.744 INFO ProgressMeter - NC_035784.1:9108166 506.2 1942250 3837.1 22:29:17.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:17.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:22.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:27.092 INFO ProgressMeter - NC_035784.1:9209097 506.3 1943060 3837.4 22:29:33.438 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:34.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:37.143 INFO ProgressMeter - NC_035784.1:9411061 506.5 1944240 3838.5 22:29:41.705 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:43.933 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:45.855 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:47.162 INFO ProgressMeter - NC_035784.1:9612321 506.7 1945440 3839.6 22:29:48.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:53.152 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:29:57.278 INFO ProgressMeter - NC_035784.1:9884475 506.9 1946930 3841.2 22:30:07.313 INFO ProgressMeter - NC_035784.1:10122161 507.0 1948760 3843.6 22:30:07.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:30:07.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:30:07.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:30:17.425 INFO ProgressMeter - NC_035784.1:10293886 507.2 1949980 3844.7 22:30:27.425 INFO ProgressMeter - NC_035784.1:10477341 507.4 1951140 3845.7 22:30:32.871 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:30:32.871 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:30:37.592 INFO ProgressMeter - NC_035784.1:10669168 507.5 1952380 3846.9 22:30:39.613 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:30:39.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:30:47.639 INFO ProgressMeter - NC_035784.1:10737621 507.7 1952890 3846.6 22:30:57.989 INFO ProgressMeter - NC_035784.1:10808466 507.9 1953400 3846.3 22:31:04.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:31:08.233 INFO ProgressMeter - NC_035784.1:10854499 508.0 1953720 3845.7 22:31:18.650 INFO ProgressMeter - NC_035784.1:10938160 508.2 1954290 3845.5 22:31:28.947 INFO ProgressMeter - NC_035784.1:11014798 508.4 1954870 3845.3 22:31:39.135 INFO ProgressMeter - NC_035784.1:11067368 508.5 1955260 3844.8 22:31:47.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:31:49.141 INFO ProgressMeter - NC_035784.1:11280841 508.7 1956550 3846.1 22:31:54.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:31:54.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:31:55.401 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:31:55.402 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:31:55.402 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:32:00.626 INFO ProgressMeter - NC_035784.1:11382545 508.9 1957190 3845.9 22:32:09.753 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:32:10.677 INFO ProgressMeter - NC_035784.1:11476209 509.1 1957680 3845.6 22:32:12.102 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:32:12.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:32:12.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:32:18.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:32:20.822 INFO ProgressMeter - NC_035784.1:11648794 509.2 1958830 3846.6 22:32:31.256 INFO ProgressMeter - NC_035784.1:11775428 509.4 1959680 3846.9 22:32:35.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:32:35.261 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:32:35.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:32:41.571 INFO ProgressMeter - NC_035784.1:11804710 509.6 1959890 3846.0 22:32:51.707 INFO ProgressMeter - NC_035784.1:11856749 509.8 1960270 3845.5 22:32:57.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:01.812 INFO ProgressMeter - NC_035784.1:11893425 509.9 1960560 3844.8 22:33:12.285 INFO ProgressMeter - NC_035784.1:11960771 510.1 1961050 3844.4 22:33:15.125 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:15.125 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:15.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:16.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:22.595 INFO ProgressMeter - NC_035784.1:12027430 510.3 1961410 3843.9 22:33:32.966 INFO ProgressMeter - NC_035784.1:12082844 510.4 1961830 3843.4 22:33:36.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:43.204 INFO ProgressMeter - NC_035784.1:12130901 510.6 1962170 3842.8 22:33:45.115 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:47.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:47.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:48.087 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:51.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:53.294 INFO ProgressMeter - NC_035784.1:12206573 510.8 1962720 3842.6 22:33:54.274 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:54.274 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:58.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:33:58.804 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:34:03.656 INFO ProgressMeter - NC_035784.1:12263647 511.0 1963120 3842.0 22:34:13.669 INFO ProgressMeter - NC_035784.1:12301741 511.1 1963370 3841.3 22:34:23.933 INFO ProgressMeter - NC_035784.1:12375067 511.3 1963900 3841.0 22:34:33.953 INFO ProgressMeter - NC_035784.1:12445186 511.5 1964480 3840.9 22:34:36.162 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:34:44.423 INFO ProgressMeter - NC_035784.1:12530083 511.6 1965140 3840.9 22:34:54.474 INFO ProgressMeter - NC_035784.1:12578773 511.8 1965530 3840.4 22:35:00.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:35:04.476 INFO ProgressMeter - NC_035784.1:12632612 512.0 1965950 3840.0 22:35:10.810 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:35:14.722 INFO ProgressMeter - NC_035784.1:12683547 512.1 1966330 3839.4 22:35:19.585 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:35:24.814 INFO ProgressMeter - NC_035784.1:12720098 512.3 1966620 3838.7 22:35:34.966 INFO ProgressMeter - NC_035784.1:12784882 512.5 1967140 3838.5 22:35:45.199 INFO ProgressMeter - NC_035784.1:12854903 512.6 1967680 3838.3 22:35:53.290 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:35:53.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:35:53.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:35:53.292 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:35:55.643 INFO ProgressMeter - NC_035784.1:12926900 512.8 1968200 3838.0 22:36:03.738 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:36:05.897 INFO ProgressMeter - NC_035784.1:13030081 513.0 1969000 3838.3 22:36:10.664 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:36:16.175 INFO ProgressMeter - NC_035784.1:13105129 513.2 1969560 3838.1 22:36:26.557 INFO ProgressMeter - NC_035784.1:13147728 513.3 1969890 3837.4 22:36:36.956 INFO ProgressMeter - NC_035784.1:13210647 513.5 1970370 3837.1 22:36:46.969 INFO ProgressMeter - NC_035784.1:13271723 513.7 1970840 3836.7 22:36:57.166 INFO ProgressMeter - NC_035784.1:13358831 513.8 1971470 3836.7 22:37:07.240 INFO ProgressMeter - NC_035784.1:13405061 514.0 1971850 3836.2 22:37:07.364 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:37:11.377 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:37:17.266 INFO ProgressMeter - NC_035784.1:13469948 514.2 1972370 3835.9 22:37:27.317 INFO ProgressMeter - NC_035784.1:13543624 514.4 1972970 3835.8 22:37:37.335 INFO ProgressMeter - NC_035784.1:13640490 514.5 1973750 3836.1 22:37:47.426 INFO ProgressMeter - NC_035784.1:13676777 514.7 1973990 3835.3 22:37:58.003 INFO ProgressMeter - NC_035784.1:13734623 514.9 1974470 3834.9 22:38:00.320 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:38:03.586 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:38:03.586 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:38:08.289 INFO ProgressMeter - NC_035784.1:13827202 515.0 1975040 3834.8 22:38:18.324 INFO ProgressMeter - NC_035784.1:13900270 515.2 1975570 3834.6 22:38:28.616 INFO ProgressMeter - NC_035784.1:13984001 515.4 1976240 3834.6 22:38:38.639 INFO ProgressMeter - NC_035784.1:14060284 515.5 1976790 3834.4 22:38:48.722 INFO ProgressMeter - NC_035784.1:14187190 515.7 1977860 3835.2 22:38:59.129 INFO ProgressMeter - NC_035784.1:14277459 515.9 1978630 3835.4 22:39:01.211 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:39:07.105 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:39:09.203 INFO ProgressMeter - NC_035784.1:14329745 516.0 1979040 3835.0 22:39:19.512 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:39:19.512 INFO ProgressMeter - NC_035784.1:14372455 516.2 1979400 3834.4 22:39:29.831 INFO ProgressMeter - NC_035784.1:14427698 516.4 1979810 3833.9 22:39:39.852 INFO ProgressMeter - NC_035784.1:14467631 516.6 1980090 3833.2 22:39:49.920 INFO ProgressMeter - NC_035784.1:14544966 516.7 1980710 3833.2 22:40:00.295 INFO ProgressMeter - NC_035784.1:14614271 516.9 1981270 3833.0 22:40:10.561 INFO ProgressMeter - NC_035784.1:14664036 517.1 1981650 3832.4 22:40:14.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:40:15.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:40:20.627 INFO ProgressMeter - NC_035784.1:14787712 517.2 1982610 3833.1 22:40:21.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:40:31.204 INFO ProgressMeter - NC_035784.1:14864218 517.4 1983210 3832.9 22:40:42.399 INFO ProgressMeter - NC_035784.1:14948332 517.6 1983920 3832.9 22:40:53.120 INFO ProgressMeter - NC_035784.1:15003421 517.8 1984370 3832.5 22:40:55.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:40:55.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:41:03.272 INFO ProgressMeter - NC_035784.1:15056186 518.0 1984760 3832.0 22:41:13.477 INFO ProgressMeter - NC_035784.1:15112878 518.1 1985200 3831.5 22:41:23.656 INFO ProgressMeter - NC_035784.1:15158349 518.3 1985560 3831.0 22:41:33.831 INFO ProgressMeter - NC_035784.1:15209574 518.5 1985970 3830.5 22:41:34.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:41:43.890 INFO ProgressMeter - NC_035784.1:15280369 518.6 1986500 3830.3 22:41:46.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:41:49.557 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:41:53.906 INFO ProgressMeter - NC_035784.1:15336605 518.8 1986980 3830.0 22:41:57.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:41:58.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:04.359 INFO ProgressMeter - NC_035784.1:15423129 519.0 1987630 3830.0 22:42:13.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:14.436 INFO ProgressMeter - NC_035784.1:15520731 519.1 1988340 3830.1 22:42:17.085 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:17.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:17.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:24.459 INFO ProgressMeter - NC_035784.1:15713753 519.3 1989850 3831.8 22:42:34.459 INFO ProgressMeter - NC_035784.1:15869466 519.5 1991060 3832.9 22:42:35.523 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:35.657 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:35.657 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:36.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:36.029 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:39.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:40.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:40.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:40.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:42.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:43.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:43.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:44.472 INFO ProgressMeter - NC_035784.1:16034313 519.6 1992340 3834.1 22:42:45.481 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:46.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:42:54.501 INFO ProgressMeter - NC_035784.1:16138345 519.8 1993200 3834.5 22:43:04.546 INFO ProgressMeter - NC_035784.1:16300188 520.0 1994570 3835.9 22:43:14.950 INFO ProgressMeter - NC_035784.1:16394939 520.1 1995350 3836.1 22:43:25.017 INFO ProgressMeter - NC_035784.1:16491707 520.3 1996100 3836.3 22:43:35.911 INFO ProgressMeter - NC_035784.1:16560094 520.5 1996640 3836.0 22:43:46.088 INFO ProgressMeter - NC_035784.1:16590800 520.7 1996890 3835.3 22:43:49.378 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:43:56.331 INFO ProgressMeter - NC_035784.1:16627486 520.8 1997140 3834.5 22:43:56.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:43:56.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:43:56.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:43:56.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:44:06.331 INFO ProgressMeter - NC_035784.1:16746294 521.0 1998150 3835.2 22:44:08.029 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:44:08.029 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:44:08.443 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:44:17.127 INFO ProgressMeter - NC_035784.1:16864458 521.2 1999140 3835.8 22:44:17.994 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:44:27.175 INFO ProgressMeter - NC_035784.1:16929933 521.3 1999640 3835.5 22:44:38.591 INFO ProgressMeter - NC_035784.1:16978346 521.5 2000020 3834.8 22:44:48.655 INFO ProgressMeter - NC_035784.1:17034184 521.7 2000450 3834.4 22:44:58.740 INFO ProgressMeter - NC_035784.1:17066015 521.9 2000710 3833.7 22:45:00.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:45:09.153 INFO ProgressMeter - NC_035784.1:17131556 522.0 2001250 3833.5 22:45:19.322 INFO ProgressMeter - NC_035784.1:17251921 522.2 2002190 3834.0 22:45:20.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:45:29.433 INFO ProgressMeter - NC_035784.1:17300794 522.4 2002600 3833.6 22:45:34.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:45:40.743 INFO ProgressMeter - NC_035784.1:17400311 522.6 2003340 3833.6 22:45:50.776 INFO ProgressMeter - NC_035784.1:17432892 522.7 2003590 3832.8 22:46:02.137 INFO ProgressMeter - NC_035784.1:17494528 522.9 2004050 3832.3 22:46:12.185 INFO ProgressMeter - NC_035784.1:17626910 523.1 2004950 3832.8 22:46:22.202 INFO ProgressMeter - NC_035784.1:17679112 523.3 2005390 3832.5 22:46:32.494 INFO ProgressMeter - NC_035784.1:17766157 523.4 2006100 3832.6 22:46:42.953 INFO ProgressMeter - NC_035784.1:17849302 523.6 2006750 3832.5 22:46:45.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:46:47.515 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:46:48.227 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:46:53.523 INFO ProgressMeter - NC_035784.1:17960805 523.8 2007550 3832.8 22:46:58.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:47:03.757 INFO ProgressMeter - NC_035784.1:18030404 524.0 2008100 3832.6 22:47:05.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:47:14.348 INFO ProgressMeter - NC_035784.1:18086708 524.1 2008570 3832.2 22:47:24.540 INFO ProgressMeter - NC_035784.1:18114216 524.3 2008790 3831.3 22:47:34.810 INFO ProgressMeter - NC_035784.1:18182974 524.5 2009300 3831.1 22:47:45.189 INFO ProgressMeter - NC_035784.1:18249790 524.6 2009780 3830.7 22:47:47.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:47:48.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:47:55.644 INFO ProgressMeter - NC_035784.1:18326194 524.8 2010350 3830.5 22:48:06.019 INFO ProgressMeter - NC_035784.1:18372687 525.0 2010730 3830.0 22:48:16.044 INFO ProgressMeter - NC_035784.1:18439736 525.2 2011240 3829.7 22:48:20.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:48:22.361 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:48:23.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:48:26.084 INFO ProgressMeter - NC_035784.1:18684086 525.3 2012820 3831.5 22:48:36.503 INFO ProgressMeter - NC_035784.1:18828080 525.5 2013850 3832.2 22:48:39.588 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:48:44.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:48:46.884 INFO ProgressMeter - NC_035784.1:18925013 525.7 2014600 3832.4 22:48:47.269 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:48:47.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:48:52.540 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:48:55.082 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:48:55.082 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:48:57.006 INFO ProgressMeter - NC_035784.1:18980501 525.8 2015050 3832.0 22:49:07.469 INFO ProgressMeter - NC_035784.1:19029658 526.0 2015420 3831.5 22:49:10.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:49:13.157 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:49:17.552 INFO ProgressMeter - NC_035784.1:19265204 526.2 2017030 3833.3 22:49:21.838 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:49:28.161 INFO ProgressMeter - NC_035784.1:19450448 526.4 2018310 3834.4 22:49:38.868 INFO ProgressMeter - NC_035784.1:19516596 526.5 2018850 3834.2 22:49:48.881 INFO ProgressMeter - NC_035784.1:19575179 526.7 2019260 3833.7 22:49:59.008 INFO ProgressMeter - NC_035784.1:19648985 526.9 2019850 3833.6 22:50:09.255 INFO ProgressMeter - NC_035784.1:19721159 527.0 2020390 3833.4 22:50:09.385 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:14.493 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:15.713 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:18.371 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:19.308 INFO ProgressMeter - NC_035784.1:19860853 527.2 2021380 3834.1 22:50:20.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:20.254 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:20.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:21.553 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:23.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:24.411 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:29.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:29.317 INFO ProgressMeter - NC_035784.1:20083336 527.4 2022880 3835.7 22:50:29.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:29.378 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:32.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:34.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:36.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:37.016 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:37.016 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:37.215 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:37.488 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:39.411 INFO ProgressMeter - NC_035784.1:20270693 527.6 2024290 3837.1 22:50:40.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:40.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:43.038 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:43.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:47.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:49.375 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:49.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:49.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:49.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:49.453 INFO ProgressMeter - NC_035784.1:20429343 527.7 2025450 3838.1 22:50:52.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:50:59.468 INFO ProgressMeter - NC_035784.1:20523038 527.9 2026100 3838.1 22:51:02.617 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:51:06.251 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:51:06.965 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:51:07.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:51:09.480 INFO ProgressMeter - NC_035784.1:20667744 528.1 2027040 3838.7 22:51:11.989 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:51:11.990 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:51:14.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:51:15.533 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:51:19.777 INFO ProgressMeter - NC_035784.1:20824690 528.2 2028110 3839.5 22:51:21.516 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:51:30.042 INFO ProgressMeter - NC_035784.1:20874126 528.4 2028490 3839.0 22:51:30.212 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:51:40.576 INFO ProgressMeter - NC_035784.1:20923680 528.6 2028880 3838.4 22:51:43.480 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:51:50.862 INFO ProgressMeter - NC_035784.1:21005772 528.7 2029470 3838.3 22:51:59.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:52:00.935 INFO ProgressMeter - NC_035784.1:21086904 528.9 2030090 3838.2 22:52:10.981 INFO ProgressMeter - NC_035784.1:21155137 529.1 2030630 3838.0 22:52:11.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:52:18.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:52:19.466 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:52:20.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:52:21.015 INFO ProgressMeter - NC_035784.1:21236375 529.2 2031260 3838.0 22:52:31.571 INFO ProgressMeter - NC_035784.1:21260637 529.4 2031430 3837.1 22:52:41.636 INFO ProgressMeter - NC_035784.1:21334645 529.6 2031960 3836.9 22:52:51.570 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:52:51.570 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:52:51.978 INFO ProgressMeter - NC_035784.1:21410315 529.8 2032600 3836.8 22:52:52.267 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:52:52.267 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:53:02.631 INFO ProgressMeter - NC_035784.1:21453802 529.9 2032950 3836.2 22:53:12.660 INFO ProgressMeter - NC_035784.1:21491028 530.1 2033260 3835.6 22:53:23.026 INFO ProgressMeter - NC_035784.1:21573685 530.3 2033890 3835.5 22:53:33.086 INFO ProgressMeter - NC_035784.1:21668179 530.4 2034620 3835.7 22:53:37.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:53:43.317 INFO ProgressMeter - NC_035784.1:21752938 530.6 2035160 3835.5 22:53:53.377 INFO ProgressMeter - NC_035784.1:21816090 530.8 2035600 3835.1 22:54:03.436 INFO ProgressMeter - NC_035784.1:21910031 531.0 2036330 3835.2 22:54:13.627 INFO ProgressMeter - NC_035784.1:21969206 531.1 2036800 3834.9 22:54:19.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:54:23.884 INFO ProgressMeter - NC_035784.1:22022955 531.3 2037240 3834.5 22:54:25.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:54:33.915 INFO ProgressMeter - NC_035784.1:22105530 531.5 2037930 3834.6 22:54:44.084 INFO ProgressMeter - NC_035784.1:22178093 531.6 2038530 3834.5 22:54:46.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:54:46.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:54:47.640 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:54:50.516 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:54:54.814 INFO ProgressMeter - NC_035784.1:22233782 531.8 2038950 3834.0 22:55:02.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:02.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:02.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:05.170 INFO ProgressMeter - NC_035784.1:22369440 532.0 2039940 3834.6 22:55:05.520 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:05.520 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:05.520 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:05.520 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:05.761 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:06.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:11.072 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:12.095 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:13.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:15.181 INFO ProgressMeter - NC_035784.1:22621292 532.1 2041450 3836.2 22:55:16.338 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:16.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:17.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:17.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:23.536 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:23.876 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:25.296 INFO ProgressMeter - NC_035784.1:22863693 532.3 2043110 3838.1 22:55:29.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:35.648 INFO ProgressMeter - NC_035784.1:22985490 532.5 2044020 3838.6 22:55:45.915 INFO ProgressMeter - NC_035784.1:23044794 532.7 2044500 3838.3 22:55:48.912 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:48.912 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:49.208 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:51.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:54.579 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:54.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:56.216 INFO ProgressMeter - NC_035784.1:23227884 532.8 2045830 3839.5 22:55:57.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:57.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:55:57.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:56:05.016 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:56:06.461 INFO ProgressMeter - NC_035784.1:23347636 533.0 2046700 3839.9 22:56:07.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:56:12.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:56:12.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:56:13.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:56:16.543 INFO ProgressMeter - NC_035784.1:23464374 533.2 2047590 3840.4 22:56:26.608 INFO ProgressMeter - NC_035784.1:23504886 533.3 2047880 3839.7 22:56:36.881 INFO ProgressMeter - NC_035784.1:23777940 533.5 2049600 3841.7 22:56:45.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:56:46.983 INFO ProgressMeter - NC_035784.1:23923511 533.7 2050580 3842.3 22:56:56.984 INFO ProgressMeter - NC_035784.1:24059030 533.8 2051490 3842.9 22:56:57.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:57:07.084 INFO ProgressMeter - NC_035784.1:24107546 534.0 2051880 3842.4 22:57:17.684 INFO ProgressMeter - NC_035784.1:24141628 534.2 2052130 3841.6 22:57:22.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:57:27.795 INFO ProgressMeter - NC_035784.1:24218406 534.4 2052720 3841.5 22:57:37.982 INFO ProgressMeter - NC_035784.1:24254160 534.5 2053020 3840.8 22:57:42.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:57:48.095 INFO ProgressMeter - NC_035784.1:24312114 534.7 2053430 3840.4 22:57:50.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:57:57.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:57:59.070 INFO ProgressMeter - NC_035784.1:24464101 534.9 2054140 3840.4 22:57:59.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:58:09.127 INFO ProgressMeter - NC_035784.1:24513131 535.0 2054420 3839.7 22:58:17.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:58:17.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:58:19.269 INFO ProgressMeter - NC_035784.1:24706779 535.2 2055460 3840.4 22:58:20.699 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:58:29.301 INFO ProgressMeter - NC_035784.1:24783621 535.4 2056080 3840.4 22:58:33.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:58:37.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:58:37.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:58:38.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:58:39.710 INFO ProgressMeter - NC_035784.1:24860045 535.6 2056680 3840.3 22:58:50.143 INFO ProgressMeter - NC_035784.1:24938027 535.7 2057300 3840.2 22:58:51.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:59:00.245 INFO ProgressMeter - NC_035784.1:24984825 535.9 2057680 3839.7 22:59:10.546 INFO ProgressMeter - NC_035784.1:25027379 536.1 2058020 3839.1 22:59:20.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:59:20.889 INFO ProgressMeter - NC_035784.1:25093846 536.2 2058540 3838.8 22:59:30.918 INFO ProgressMeter - NC_035784.1:25160638 536.4 2059090 3838.6 22:59:33.981 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:59:34.355 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:59:35.671 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:59:35.671 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:59:40.946 INFO ProgressMeter - NC_035784.1:25246208 536.6 2059750 3838.7 22:59:48.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 22:59:51.005 INFO ProgressMeter - NC_035784.1:25292516 536.7 2060100 3838.1 23:00:01.532 INFO ProgressMeter - NC_035784.1:25344329 536.9 2060520 3837.7 23:00:09.197 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:00:09.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:00:09.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:00:11.559 INFO ProgressMeter - NC_035784.1:25451229 537.1 2061350 3838.0 23:00:19.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:00:19.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:00:21.891 INFO ProgressMeter - NC_035784.1:25514900 537.3 2061870 3837.7 23:00:26.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:00:30.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:00:32.490 INFO ProgressMeter - NC_035784.1:25560187 537.4 2062240 3837.2 23:00:42.643 INFO ProgressMeter - NC_035784.1:25632295 537.6 2062800 3837.0 23:00:53.198 INFO ProgressMeter - NC_035784.1:25699713 537.8 2063270 3836.6 23:01:00.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:01:00.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:01:00.965 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:01:03.352 INFO ProgressMeter - NC_035784.1:25786347 538.0 2063960 3836.7 23:01:06.181 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:01:14.568 INFO ProgressMeter - NC_035784.1:25843318 538.1 2064390 3836.2 23:01:17.791 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:01:24.934 INFO ProgressMeter - NC_035784.1:25923169 538.3 2065030 3836.1 23:01:35.163 INFO ProgressMeter - NC_035784.1:25980943 538.5 2065500 3835.8 23:01:39.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:01:39.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:01:44.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:01:45.711 INFO ProgressMeter - NC_035784.1:26070509 538.7 2066160 3835.8 23:01:48.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:01:55.840 INFO ProgressMeter - NC_035784.1:26150904 538.8 2066750 3835.7 23:02:05.863 INFO ProgressMeter - NC_035784.1:26219571 539.0 2067270 3835.4 23:02:12.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:02:13.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:02:13.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:02:16.849 INFO ProgressMeter - NC_035784.1:26288898 539.2 2067810 3835.1 23:02:27.179 INFO ProgressMeter - NC_035784.1:26325311 539.3 2068100 3834.4 23:02:37.186 INFO ProgressMeter - NC_035784.1:26391504 539.5 2068650 3834.3 23:02:47.249 INFO ProgressMeter - NC_035784.1:26489945 539.7 2069370 3834.4 23:02:50.378 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:02:57.366 INFO ProgressMeter - NC_035784.1:26614676 539.9 2070330 3835.0 23:03:00.945 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:00.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:05.254 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:07.407 INFO ProgressMeter - NC_035784.1:26791007 540.0 2071800 3836.5 23:03:12.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:16.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:17.487 INFO ProgressMeter - NC_035784.1:26902496 540.2 2072680 3837.0 23:03:18.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:18.798 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:20.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:22.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:22.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:22.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:23.823 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:24.793 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:27.495 INFO ProgressMeter - NC_035784.1:27107380 540.4 2074190 3838.6 23:03:29.421 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:29.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:30.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:35.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:37.208 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:37.746 INFO ProgressMeter - NC_035784.1:27207810 540.5 2074980 3838.8 23:03:47.779 INFO ProgressMeter - NC_035784.1:27270803 540.7 2075440 3838.5 23:03:52.162 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:03:58.314 INFO ProgressMeter - NC_035784.1:27322212 540.9 2075800 3837.9 23:04:08.562 INFO ProgressMeter - NC_035784.1:27393102 541.0 2076350 3837.7 23:04:18.623 INFO ProgressMeter - NC_035784.1:27509940 541.2 2077230 3838.2 23:04:29.023 INFO ProgressMeter - NC_035784.1:27635441 541.4 2078150 3838.6 23:04:39.140 INFO ProgressMeter - NC_035784.1:27666778 541.5 2078390 3837.9 23:04:48.727 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:04:49.292 INFO ProgressMeter - NC_035784.1:27719424 541.7 2078810 3837.4 23:04:59.403 INFO ProgressMeter - NC_035784.1:27762064 541.9 2079150 3836.9 23:05:09.562 INFO ProgressMeter - NC_035784.1:27819430 542.1 2079580 3836.5 23:05:19.713 INFO ProgressMeter - NC_035784.1:27884242 542.2 2080050 3836.1 23:05:29.733 INFO ProgressMeter - NC_035784.1:27921280 542.4 2080340 3835.5 23:05:40.353 INFO ProgressMeter - NC_035784.1:27973659 542.6 2080750 3835.0 23:05:50.659 INFO ProgressMeter - NC_035784.1:28019756 542.7 2081110 3834.5 23:05:52.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:05:52.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:05:59.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:05:59.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:05:59.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:06:00.942 INFO ProgressMeter - NC_035784.1:28085082 542.9 2081650 3834.2 23:06:10.965 INFO ProgressMeter - NC_035784.1:28130605 543.1 2082010 3833.7 23:06:20.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:06:20.998 INFO ProgressMeter - NC_035784.1:28188558 543.2 2082460 3833.4 23:06:31.213 INFO ProgressMeter - NC_035784.1:28220995 543.4 2082730 3832.7 23:06:34.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:06:35.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:06:41.849 INFO ProgressMeter - NC_035784.1:28279077 543.6 2083160 3832.2 23:06:51.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:06:51.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:06:52.163 INFO ProgressMeter - NC_035784.1:28496850 543.8 2084300 3833.1 23:07:02.186 INFO ProgressMeter - NC_035784.1:28552581 543.9 2084740 3832.7 23:07:12.340 INFO ProgressMeter - NC_035784.1:28607399 544.1 2085130 3832.2 23:07:17.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:07:19.547 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:07:22.373 INFO ProgressMeter - NC_035784.1:28688970 544.3 2085800 3832.3 23:07:27.408 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:07:27.408 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:07:32.808 INFO ProgressMeter - NC_035784.1:28750271 544.4 2086270 3831.9 23:07:36.116 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:07:43.090 INFO ProgressMeter - NC_035784.1:28785903 544.6 2086560 3831.3 23:07:54.948 INFO ProgressMeter - NC_035784.1:28806940 544.8 2086700 3830.1 23:08:05.316 INFO ProgressMeter - NC_035784.1:28837723 545.0 2086910 3829.3 23:08:10.329 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:08:10.329 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:08:10.329 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:08:15.563 INFO ProgressMeter - NC_035784.1:28893730 545.2 2087290 3828.8 23:08:25.682 INFO ProgressMeter - NC_035784.1:28964265 545.3 2087860 3828.7 23:08:35.907 INFO ProgressMeter - NC_035784.1:29033332 545.5 2088400 3828.5 23:08:45.945 INFO ProgressMeter - NC_035784.1:29071737 545.7 2088690 3827.8 23:08:52.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:08:56.047 INFO ProgressMeter - NC_035784.1:29130766 545.8 2089150 3827.5 23:08:59.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:08:59.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:09:06.522 INFO ProgressMeter - NC_035784.1:29165618 546.0 2089410 3826.7 23:09:09.866 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:09:10.458 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:09:12.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:09:16.678 INFO ProgressMeter - NC_035784.1:29245680 546.2 2090050 3826.7 23:09:26.923 INFO ProgressMeter - NC_035784.1:29290284 546.3 2090400 3826.2 23:09:28.243 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:09:28.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:09:28.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:09:36.952 INFO ProgressMeter - NC_035784.1:29346291 546.5 2090810 3825.7 23:09:44.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:09:47.152 INFO ProgressMeter - NC_035784.1:29394047 546.7 2091200 3825.3 23:09:51.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:09:57.509 INFO ProgressMeter - NC_035784.1:29451082 546.9 2091640 3824.9 23:10:07.677 INFO ProgressMeter - NC_035784.1:29519353 547.0 2092180 3824.7 23:10:09.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:10:09.394 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:10:18.133 INFO ProgressMeter - NC_035784.1:29567748 547.2 2092560 3824.1 23:10:19.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:10:29.200 INFO ProgressMeter - NC_035784.1:29649835 547.4 2093170 3824.0 23:10:39.245 INFO ProgressMeter - NC_035784.1:29699960 547.5 2093560 3823.5 23:10:49.298 INFO ProgressMeter - NC_035784.1:29756470 547.7 2094010 3823.2 23:10:59.669 INFO ProgressMeter - NC_035784.1:29811861 547.9 2094460 3822.8 23:11:07.047 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:11:09.780 INFO ProgressMeter - NC_035784.1:29909395 548.1 2095040 3822.7 23:11:15.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:11:19.846 INFO ProgressMeter - NC_035784.1:29969022 548.2 2095530 3822.4 23:11:29.849 INFO ProgressMeter - NC_035784.1:30070435 548.4 2096330 3822.7 23:11:35.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:11:36.401 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:11:39.944 INFO ProgressMeter - NC_035784.1:30220050 548.6 2097530 3823.7 23:11:50.130 INFO ProgressMeter - NC_035784.1:30388852 548.7 2098710 3824.7 23:11:55.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:11:56.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:00.976 INFO ProgressMeter - NC_035784.1:30548055 548.9 2099820 3825.4 23:12:02.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:05.209 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:09.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:09.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:11.164 INFO ProgressMeter - NC_035784.1:30777899 549.1 2101400 3827.1 23:12:16.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:19.403 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:21.217 INFO ProgressMeter - NC_035784.1:30994101 549.2 2102780 3828.5 23:12:22.419 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:30.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:30.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:30.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:30.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:30.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:31.603 INFO ProgressMeter - NC_035784.1:31198741 549.4 2104200 3829.8 23:12:36.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:42.161 INFO ProgressMeter - NC_035784.1:31335336 549.6 2105130 3830.3 23:12:44.646 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:52.168 INFO ProgressMeter - NC_035784.1:31440316 549.8 2105870 3830.5 23:12:56.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:12:57.618 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:13:02.514 INFO ProgressMeter - NC_035784.1:31659399 549.9 2107370 3832.0 23:13:08.537 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:13:11.523 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:13:12.538 INFO ProgressMeter - NC_035784.1:31837500 550.1 2108560 3833.0 23:13:17.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:13:22.709 INFO ProgressMeter - NC_035784.1:32069528 550.3 2110160 3834.7 23:13:26.186 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:13:26.186 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:13:32.854 INFO ProgressMeter - NC_035784.1:32251074 550.4 2111370 3835.8 23:13:34.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:13:42.932 INFO ProgressMeter - NC_035784.1:32412566 550.6 2112440 3836.5 23:13:51.329 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:13:53.545 INFO ProgressMeter - NC_035784.1:32566383 550.8 2113400 3837.0 23:14:03.650 INFO ProgressMeter - NC_035784.1:32613067 551.0 2113790 3836.6 23:14:07.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:14:13.676 INFO ProgressMeter - NC_035784.1:32674929 551.1 2114300 3836.3 23:14:17.311 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:14:24.701 INFO ProgressMeter - NC_035784.1:32724913 551.3 2114660 3835.7 23:14:29.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:14:29.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:14:29.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:14:34.776 INFO ProgressMeter - NC_035784.1:32786540 551.5 2115170 3835.5 23:14:44.780 INFO ProgressMeter - NC_035784.1:32925250 551.6 2116160 3836.1 23:14:44.944 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:14:47.537 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:14:54.918 INFO ProgressMeter - NC_035784.1:33128093 551.8 2117490 3837.3 23:15:04.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:15:04.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:15:04.928 INFO ProgressMeter - NC_035784.1:33304764 552.0 2118680 3838.3 23:15:06.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:15:15.031 INFO ProgressMeter - NC_035784.1:33387596 552.1 2119180 3838.1 23:15:25.043 INFO ProgressMeter - NC_035784.1:33438984 552.3 2119580 3837.6 23:15:25.671 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:15:35.107 INFO ProgressMeter - NC_035784.1:33630877 552.5 2120780 3838.6 23:15:36.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:15:37.649 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:15:45.200 INFO ProgressMeter - NC_035784.1:33845085 552.6 2122270 3840.2 23:15:45.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:15:55.531 INFO ProgressMeter - NC_035784.1:33954118 552.8 2122970 3840.2 23:16:05.815 INFO ProgressMeter - NC_035784.1:33998260 553.0 2123330 3839.7 23:16:07.547 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:16:11.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:16:15.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:16:15.968 INFO ProgressMeter - NC_035784.1:34116907 553.2 2124130 3840.0 23:16:25.971 INFO ProgressMeter - NC_035784.1:34392056 553.3 2125860 3841.9 23:16:35.259 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:16:36.053 INFO ProgressMeter - NC_035784.1:34613554 553.5 2127330 3843.4 23:16:43.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:16:44.557 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:16:46.027 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:16:46.205 INFO ProgressMeter - NC_035784.1:34817993 553.7 2128690 3844.7 23:16:48.786 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:16:54.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:16:56.206 INFO ProgressMeter - NC_035784.1:34945357 553.8 2129720 3845.4 23:16:58.777 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:17:03.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:17:06.224 INFO ProgressMeter - NC_035784.1:35045923 554.0 2130470 3845.6 23:17:12.440 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:17:14.129 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:17:16.290 INFO ProgressMeter - NC_035784.1:35104057 554.2 2130880 3845.2 23:17:26.343 INFO ProgressMeter - NC_035784.1:35169124 554.3 2131350 3844.9 23:17:27.571 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:17:36.364 INFO ProgressMeter - NC_035784.1:35220546 554.5 2131750 3844.4 23:17:46.718 INFO ProgressMeter - NC_035784.1:35271192 554.7 2132130 3843.9 23:17:57.841 INFO ProgressMeter - NC_035784.1:35354910 554.9 2132820 3843.9 23:17:58.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:17:58.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:17:58.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:17:58.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:17:58.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:17:58.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:17:58.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:03.064 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:08.079 INFO ProgressMeter - NC_035784.1:35412602 555.0 2133280 3843.5 23:18:12.568 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:17.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:17.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:17.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:18.091 INFO ProgressMeter - NC_035784.1:35499803 555.2 2133910 3843.5 23:18:18.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:19.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:19.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:24.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:27.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:28.157 INFO ProgressMeter - NC_035784.1:35652704 555.4 2135110 3844.5 23:18:29.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:29.570 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:29.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:35.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:36.509 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:18:38.160 INFO ProgressMeter - NC_035784.1:35792491 555.5 2136170 3845.3 23:18:48.325 INFO ProgressMeter - NC_035784.1:35846293 555.7 2136600 3844.9 23:18:58.643 INFO ProgressMeter - NC_035784.1:35892653 555.9 2136920 3844.3 23:19:09.210 INFO ProgressMeter - NC_035784.1:35932706 556.0 2137180 3843.5 23:19:16.626 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:19:17.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:19:19.408 INFO ProgressMeter - NC_035784.1:35975073 556.2 2137530 3843.0 23:19:20.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:19:20.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:19:30.064 INFO ProgressMeter - NC_035784.1:36008461 556.4 2137780 3842.2 23:19:40.829 INFO ProgressMeter - NC_035784.1:36027471 556.6 2137910 3841.2 23:19:52.091 INFO ProgressMeter - NC_035784.1:36051490 556.8 2138080 3840.2 23:20:02.283 INFO ProgressMeter - NC_035784.1:36070805 556.9 2138210 3839.3 23:20:06.514 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:20:12.299 INFO ProgressMeter - NC_035784.1:36100132 557.1 2138420 3838.5 23:20:13.146 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:20:22.484 INFO ProgressMeter - NC_035784.1:36175097 557.3 2139020 3838.4 23:20:32.935 INFO ProgressMeter - NC_035784.1:36233715 557.4 2139450 3838.0 23:20:43.031 INFO ProgressMeter - NC_035784.1:36262218 557.6 2139660 3837.2 23:20:51.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:20:51.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:20:53.124 INFO ProgressMeter - NC_035784.1:36276126 557.8 2139760 3836.2 23:21:03.286 INFO ProgressMeter - NC_035784.1:36298508 558.0 2139920 3835.3 23:21:13.522 INFO ProgressMeter - NC_035784.1:36318583 558.1 2140070 3834.4 23:21:20.763 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:21:20.764 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:21:23.580 INFO ProgressMeter - NC_035784.1:36334083 558.3 2140180 3833.5 23:21:33.635 INFO ProgressMeter - NC_035784.1:36375209 558.5 2140490 3832.9 23:21:37.127 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:21:37.128 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:21:37.128 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:21:43.659 INFO ProgressMeter - NC_035784.1:36436774 558.6 2140910 3832.5 23:21:45.738 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:21:46.496 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:21:49.675 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:21:49.675 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:21:53.934 INFO ProgressMeter - NC_035784.1:36503744 558.8 2141350 3832.1 23:21:56.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:22:04.229 INFO ProgressMeter - NC_035784.1:36568515 559.0 2141860 3831.8 23:22:14.249 INFO ProgressMeter - NC_035784.1:36630657 559.1 2142350 3831.6 23:22:24.495 INFO ProgressMeter - NC_035784.1:36669846 559.3 2142670 3831.0 23:22:34.521 INFO ProgressMeter - NC_035784.1:36746645 559.5 2143250 3830.9 23:22:44.601 INFO ProgressMeter - NC_035784.1:36784456 559.6 2143540 3830.2 23:22:51.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:22:55.230 INFO ProgressMeter - NC_035784.1:36826237 559.8 2143870 3829.6 23:23:06.162 INFO ProgressMeter - NC_035784.1:36916377 560.0 2144490 3829.5 23:23:17.043 INFO ProgressMeter - NC_035784.1:36980694 560.2 2145010 3829.1 23:23:28.551 INFO ProgressMeter - NC_035784.1:36990599 560.4 2145080 3828.0 23:23:38.682 INFO ProgressMeter - NC_035784.1:37004296 560.5 2145190 3827.0 23:23:48.695 INFO ProgressMeter - NC_035784.1:37072733 560.7 2145740 3826.8 23:23:58.720 INFO ProgressMeter - NC_035784.1:37116629 560.9 2146090 3826.3 23:24:09.640 INFO ProgressMeter - NC_035784.1:37178837 561.1 2146580 3826.0 23:24:18.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:24:18.320 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:24:20.369 INFO ProgressMeter - NC_035784.1:37220232 561.2 2146900 3825.3 23:24:30.547 INFO ProgressMeter - NC_035784.1:37259206 561.4 2147250 3824.8 23:24:37.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:24:40.562 INFO ProgressMeter - NC_035784.1:37310526 561.6 2147640 3824.3 23:24:50.694 INFO ProgressMeter - NC_035784.1:37369699 561.7 2148100 3824.0 23:25:01.044 INFO ProgressMeter - NC_035784.1:37441857 561.9 2148680 3823.9 23:25:08.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:25:12.670 INFO ProgressMeter - NC_035784.1:37489163 562.1 2149040 3823.2 23:25:23.113 INFO ProgressMeter - NC_035784.1:37552561 562.3 2149570 3822.9 23:25:33.970 INFO ProgressMeter - NC_035784.1:37589915 562.5 2149860 3822.2 23:25:44.164 INFO ProgressMeter - NC_035784.1:37642329 562.6 2150230 3821.7 23:25:46.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:25:54.177 INFO ProgressMeter - NC_035784.1:37696973 562.8 2150660 3821.4 23:26:01.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:26:04.599 INFO ProgressMeter - NC_035784.1:37739955 563.0 2151000 3820.8 23:26:15.202 INFO ProgressMeter - NC_035784.1:37784635 563.1 2151350 3820.2 23:26:25.447 INFO ProgressMeter - NC_035784.1:37821938 563.3 2151630 3819.6 23:26:35.489 INFO ProgressMeter - NC_035784.1:37861109 563.5 2151920 3818.9 23:26:41.086 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:26:44.753 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:26:46.235 INFO ProgressMeter - NC_035784.1:37895203 563.7 2152170 3818.2 23:26:47.193 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:26:56.297 INFO ProgressMeter - NC_035784.1:37932298 563.8 2152450 3817.5 23:27:06.751 INFO ProgressMeter - NC_035784.1:37994145 564.0 2152930 3817.2 23:27:16.987 INFO ProgressMeter - NC_035784.1:38063906 564.2 2153470 3817.0 23:27:27.168 INFO ProgressMeter - NC_035784.1:38109986 564.3 2153800 3816.4 23:27:37.295 INFO ProgressMeter - NC_035784.1:38154438 564.5 2154120 3815.9 23:27:47.375 INFO ProgressMeter - NC_035784.1:38179735 564.7 2154310 3815.1 23:27:57.801 INFO ProgressMeter - NC_035784.1:38211414 564.9 2154580 3814.4 23:28:08.042 INFO ProgressMeter - NC_035784.1:38246067 565.0 2154830 3813.7 23:28:14.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:28:18.250 INFO ProgressMeter - NC_035784.1:38314908 565.2 2155360 3813.4 23:28:28.275 INFO ProgressMeter - NC_035784.1:38365493 565.4 2155780 3813.1 23:28:38.351 INFO ProgressMeter - NC_035784.1:38456367 565.5 2156400 3813.0 23:28:43.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:28:44.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:28:48.882 INFO ProgressMeter - NC_035784.1:38599160 565.7 2157310 3813.5 23:28:58.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:28:58.909 INFO ProgressMeter - NC_035784.1:38722948 565.9 2158200 3813.9 23:29:04.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:04.095 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:04.095 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:04.431 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:08.966 INFO ProgressMeter - NC_035784.1:38883236 566.0 2159200 3814.5 23:29:19.019 INFO ProgressMeter - NC_035784.1:39074343 566.2 2160470 3815.7 23:29:29.035 INFO ProgressMeter - NC_035784.1:39192828 566.4 2161300 3816.0 23:29:29.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:30.466 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:31.378 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:32.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:32.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:34.886 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:39.077 INFO ProgressMeter - NC_035784.1:39366599 566.5 2162330 3816.7 23:29:41.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:41.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:44.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:49.169 INFO ProgressMeter - NC_035784.1:39470296 566.7 2163050 3816.8 23:29:58.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:29:59.439 INFO ProgressMeter - NC_035784.1:39536647 566.9 2163570 3816.6 23:30:09.488 INFO ProgressMeter - NC_035784.1:39612784 567.1 2164130 3816.4 23:30:19.700 INFO ProgressMeter - NC_035784.1:39668479 567.2 2164580 3816.1 23:30:23.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:30:25.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:30:31.049 INFO ProgressMeter - NC_035784.1:39741910 567.4 2165150 3815.8 23:30:41.361 INFO ProgressMeter - NC_035784.1:39786068 567.6 2165500 3815.3 23:30:49.298 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:30:51.427 INFO ProgressMeter - NC_035784.1:39835709 567.8 2165880 3814.8 23:31:01.545 INFO ProgressMeter - NC_035784.1:39864445 567.9 2166090 3814.1 23:31:11.748 INFO ProgressMeter - NC_035784.1:39909467 568.1 2166450 3813.6 23:31:14.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:31:19.474 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:31:21.895 INFO ProgressMeter - NC_035784.1:39983517 568.3 2167000 3813.4 23:31:23.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:31:32.461 INFO ProgressMeter - NC_035784.1:40038071 568.4 2167450 3813.0 23:31:42.895 INFO ProgressMeter - NC_035784.1:40082435 568.6 2167790 3812.4 23:31:53.741 INFO ProgressMeter - NC_035784.1:40138562 568.8 2168230 3812.0 23:32:03.822 INFO ProgressMeter - NC_035784.1:40215905 569.0 2168810 3811.9 23:32:06.157 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:32:13.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:32:13.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:32:13.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:32:14.202 INFO ProgressMeter - NC_035784.1:40296248 569.1 2169390 3811.8 23:32:18.533 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:32:18.533 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:32:24.312 INFO ProgressMeter - NC_035784.1:40353372 569.3 2169840 3811.4 23:32:34.351 INFO ProgressMeter - NC_035784.1:40433990 569.5 2170480 3811.4 23:32:40.318 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:32:41.392 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:32:44.908 INFO ProgressMeter - NC_035784.1:40569563 569.6 2171530 3812.1 23:32:55.315 INFO ProgressMeter - NC_035784.1:40628396 569.8 2171980 3811.7 23:32:59.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:33:05.341 INFO ProgressMeter - NC_035784.1:40657974 570.0 2172210 3811.0 23:33:15.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:33:15.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:33:15.859 INFO ProgressMeter - NC_035784.1:40732032 570.2 2172800 3810.9 23:33:26.509 INFO ProgressMeter - NC_035784.1:40775171 570.3 2173110 3810.2 23:33:33.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:33:36.979 INFO ProgressMeter - NC_035784.1:40803970 570.5 2173310 3809.4 23:33:47.199 INFO ProgressMeter - NC_035784.1:40865445 570.7 2173790 3809.1 23:33:48.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:33:55.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:33:55.731 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:33:55.731 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:33:57.509 INFO ProgressMeter - NC_035784.1:40949704 570.9 2174350 3808.9 23:34:07.763 INFO ProgressMeter - NC_035784.1:41031128 571.0 2174880 3808.7 23:34:15.718 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:34:16.193 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:34:16.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:34:16.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:34:16.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:34:18.145 INFO ProgressMeter - NC_035784.1:41110540 571.2 2175510 3808.7 23:34:28.514 INFO ProgressMeter - NC_035784.1:41172420 571.4 2175960 3808.3 23:34:38.590 INFO ProgressMeter - NC_035784.1:41208635 571.5 2176230 3807.7 23:34:48.624 INFO ProgressMeter - NC_035784.1:41257809 571.7 2176610 3807.2 23:34:58.637 INFO ProgressMeter - NC_035784.1:41311710 571.9 2177030 3806.8 23:35:05.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:35:08.683 INFO ProgressMeter - NC_035784.1:41400310 572.0 2177650 3806.8 23:35:10.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:35:19.040 INFO ProgressMeter - NC_035784.1:41464211 572.2 2178090 3806.4 23:35:29.625 INFO ProgressMeter - NC_035784.1:41513684 572.4 2178480 3805.9 23:35:31.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:35:39.837 INFO ProgressMeter - NC_035784.1:41611079 572.6 2179160 3806.0 23:35:49.848 INFO ProgressMeter - NC_035784.1:41666225 572.7 2179580 3805.6 23:35:54.943 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:35:56.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:35:56.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:36:00.148 INFO ProgressMeter - NC_035784.1:41769237 572.9 2180300 3805.7 23:36:10.464 INFO ProgressMeter - NC_035784.1:41842150 573.1 2180850 3805.6 23:36:20.951 INFO ProgressMeter - NC_035784.1:41892247 573.2 2181260 3805.1 23:36:30.972 INFO ProgressMeter - NC_035784.1:41946929 573.4 2181690 3804.8 23:36:41.007 INFO ProgressMeter - NC_035784.1:42016485 573.6 2182200 3804.5 23:36:51.656 INFO ProgressMeter - NC_035784.1:42084069 573.8 2182710 3804.2 23:37:00.199 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:37:02.160 INFO ProgressMeter - NC_035784.1:42173995 573.9 2183420 3804.3 23:37:02.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:37:06.325 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:37:12.546 INFO ProgressMeter - NC_035784.1:42345174 574.1 2184310 3804.7 23:37:12.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:37:22.563 INFO ProgressMeter - NC_035784.1:42515787 574.3 2185330 3805.4 23:37:23.210 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:37:23.210 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:37:23.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:37:23.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:37:23.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:37:31.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:37:32.659 INFO ProgressMeter - NC_035784.1:42634810 574.4 2186180 3805.8 23:37:42.838 INFO ProgressMeter - NC_035784.1:42721866 574.6 2186860 3805.8 23:37:52.930 INFO ProgressMeter - NC_035784.1:42789675 574.8 2187290 3805.5 23:37:56.719 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:37:57.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:38:02.978 INFO ProgressMeter - NC_035784.1:42848011 574.9 2187720 3805.1 23:38:12.985 INFO ProgressMeter - NC_035784.1:42905898 575.1 2188130 3804.7 23:38:23.017 INFO ProgressMeter - NC_035784.1:43021659 575.3 2189020 3805.1 23:38:33.218 INFO ProgressMeter - NC_035784.1:43090848 575.4 2189550 3804.9 23:38:35.190 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:38:43.600 INFO ProgressMeter - NC_035784.1:43223810 575.6 2190550 3805.5 23:38:46.814 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:38:53.608 INFO ProgressMeter - NC_035784.1:43292261 575.8 2191050 3805.3 23:39:04.059 INFO ProgressMeter - NC_035784.1:43345827 576.0 2191470 3804.9 23:39:14.711 INFO ProgressMeter - NC_035784.1:43398109 576.1 2191870 3804.4 23:39:21.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:39:24.714 INFO ProgressMeter - NC_035784.1:43569831 576.3 2193230 3805.7 23:39:34.762 INFO ProgressMeter - NC_035784.1:43798027 576.5 2195050 3807.7 23:39:37.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:39:44.826 INFO ProgressMeter - NC_035784.1:44013766 576.6 2196670 3809.4 23:39:49.395 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:39:49.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:39:49.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:39:49.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:39:55.152 INFO ProgressMeter - NC_035784.1:44154152 576.8 2197780 3810.2 23:40:01.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:40:02.303 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:40:02.303 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:40:02.303 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:40:05.077 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:40:05.219 INFO ProgressMeter - NC_035784.1:44319191 577.0 2198810 3810.9 23:40:06.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:40:06.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:40:09.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:40:15.220 INFO ProgressMeter - NC_035784.1:44402058 577.1 2199460 3810.9 23:40:25.240 INFO ProgressMeter - NC_035784.1:44470414 577.3 2199990 3810.7 23:40:35.265 INFO ProgressMeter - NC_035784.1:44666642 577.5 2201600 3812.4 23:40:45.315 INFO ProgressMeter - NC_035784.1:44809299 577.7 2202760 3813.3 23:40:55.356 INFO ProgressMeter - NC_035784.1:44858771 577.8 2203160 3812.9 23:41:05.560 INFO ProgressMeter - NC_035784.1:45036754 578.0 2204570 3814.2 23:41:15.695 INFO ProgressMeter - NC_035784.1:45092583 578.2 2205030 3813.9 23:41:26.094 INFO ProgressMeter - NC_035784.1:45170195 578.3 2205670 3813.9 23:41:36.270 INFO ProgressMeter - NC_035784.1:45260508 578.5 2206340 3813.9 23:41:38.324 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:41:38.324 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:41:39.962 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:41:39.962 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:41:46.319 INFO ProgressMeter - NC_035784.1:45488278 578.7 2207680 3815.1 23:41:52.981 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:41:56.460 INFO ProgressMeter - NC_035784.1:45608907 578.8 2208650 3815.7 23:41:56.875 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:42:06.618 INFO ProgressMeter - NC_035784.1:45663487 579.0 2209080 3815.3 23:42:17.396 INFO ProgressMeter - NC_035784.1:45714463 579.2 2209490 3814.8 23:42:20.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:42:27.862 INFO ProgressMeter - NC_035784.1:45779287 579.4 2210010 3814.6 23:42:32.875 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:42:35.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:42:35.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:42:35.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:42:35.542 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:42:35.950 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:42:37.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:42:37.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:42:37.776 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:42:37.866 INFO ProgressMeter - NC_035784.1:45849300 579.5 2210570 3814.4 23:42:48.243 INFO ProgressMeter - NC_035784.1:45928565 579.7 2211210 3814.4 23:42:58.303 INFO ProgressMeter - NC_035784.1:46009792 579.9 2211860 3814.4 23:43:03.487 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:08.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:08.322 INFO ProgressMeter - NC_035784.1:46085529 580.0 2212450 3814.3 23:43:14.705 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:18.363 INFO ProgressMeter - NC_035784.1:46164519 580.2 2213090 3814.3 23:43:18.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:20.154 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:21.474 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:21.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:21.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:21.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:28.396 INFO ProgressMeter - NC_035784.1:46231337 580.4 2213630 3814.2 23:43:29.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:38.420 INFO ProgressMeter - NC_035784.1:46355520 580.5 2214550 3814.7 23:43:44.625 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:47.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:47.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:47.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:47.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:49.042 INFO ProgressMeter - NC_035784.1:46485116 580.7 2215550 3815.2 23:43:58.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:43:59.141 INFO ProgressMeter - NC_035784.1:46608572 580.9 2216450 3815.7 23:43:59.532 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:44:10.041 INFO ProgressMeter - NC_035784.1:46712245 581.1 2217000 3815.4 23:44:12.631 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:44:20.102 INFO ProgressMeter - NC_035784.1:46786321 581.2 2217550 3815.3 23:44:27.146 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:44:30.156 INFO ProgressMeter - NC_035784.1:46849261 581.4 2218010 3815.0 23:44:34.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:44:40.156 INFO ProgressMeter - NC_035784.1:46972281 581.6 2218940 3815.5 23:44:50.298 INFO ProgressMeter - NC_035784.1:47128129 581.7 2220200 3816.5 23:44:54.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:45:00.420 INFO ProgressMeter - NC_035784.1:47174357 581.9 2220570 3816.1 23:45:11.078 INFO ProgressMeter - NC_035784.1:47213086 582.1 2220850 3815.4 23:45:15.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:45:21.422 INFO ProgressMeter - NC_035784.1:47290998 582.3 2221450 3815.3 23:45:30.389 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:45:31.960 INFO ProgressMeter - NC_035784.1:47341519 582.4 2221830 3814.8 23:45:42.748 INFO ProgressMeter - NC_035784.1:47376923 582.6 2222070 3814.0 23:45:46.921 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:45:55.759 INFO ProgressMeter - NC_035784.1:47440824 582.8 2222550 3813.4 23:46:01.149 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:46:06.240 INFO ProgressMeter - NC_035784.1:47480111 583.0 2222820 3812.7 23:46:12.283 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:46:16.520 INFO ProgressMeter - NC_035784.1:47516079 583.2 2223080 3812.1 23:46:21.278 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:46:24.033 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:46:27.057 INFO ProgressMeter - NC_035784.1:47600547 583.3 2223740 3812.0 23:46:37.118 INFO ProgressMeter - NC_035784.1:47645302 583.5 2224100 3811.6 23:46:39.044 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:46:47.497 INFO ProgressMeter - NC_035784.1:47699213 583.7 2224510 3811.1 23:46:56.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:46:57.508 INFO ProgressMeter - NC_035784.1:47739040 583.9 2224780 3810.5 23:46:57.855 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:46:57.940 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:47:07.582 INFO ProgressMeter - NC_035784.1:47807855 584.0 2225220 3810.2 23:47:12.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:47:17.981 INFO ProgressMeter - NC_035784.1:47865967 584.2 2225630 3809.7 23:47:23.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:47:28.135 INFO ProgressMeter - NC_035784.1:47903354 584.4 2225890 3809.1 23:47:38.430 INFO ProgressMeter - NC_035784.1:47953129 584.5 2226280 3808.6 23:47:46.594 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:47:48.500 INFO ProgressMeter - NC_035784.1:47997422 584.7 2226630 3808.1 23:47:49.078 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:47:49.508 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:47:49.508 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:47:58.826 INFO ProgressMeter - NC_035784.1:48045339 584.9 2226970 3807.6 23:48:08.910 INFO ProgressMeter - NC_035784.1:48113855 585.0 2227520 3807.4 23:48:19.282 INFO ProgressMeter - NC_035784.1:48164861 585.2 2227890 3806.9 23:48:21.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:48:29.413 INFO ProgressMeter - NC_035784.1:48224081 585.4 2228330 3806.6 23:48:34.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:48:34.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:48:39.830 INFO ProgressMeter - NC_035784.1:48304730 585.6 2228850 3806.4 23:48:46.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:48:47.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:48:47.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:48:49.916 INFO ProgressMeter - NC_035784.1:48364499 585.7 2229240 3805.9 23:49:00.099 INFO ProgressMeter - NC_035784.1:48444843 585.9 2229800 3805.8 23:49:00.246 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:49:02.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:49:10.441 INFO ProgressMeter - NC_035784.1:48511036 586.1 2230290 3805.5 23:49:11.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:49:11.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:49:11.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:49:20.607 INFO ProgressMeter - NC_035784.1:48612999 586.2 2231030 3805.7 23:49:30.847 INFO ProgressMeter - NC_035784.1:48690789 586.4 2231620 3805.6 23:49:40.967 INFO ProgressMeter - NC_035784.1:48803291 586.6 2232450 3805.9 23:49:46.964 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:49:50.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:49:50.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:49:50.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:49:51.116 INFO ProgressMeter - NC_035784.1:48931480 586.7 2233360 3806.3 23:50:02.147 INFO ProgressMeter - NC_035784.1:49001529 586.9 2233920 3806.1 23:50:12.237 INFO ProgressMeter - NC_035784.1:49056051 587.1 2234340 3805.7 23:50:22.834 INFO ProgressMeter - NC_035784.1:49128280 587.3 2234850 3805.4 23:50:33.656 INFO ProgressMeter - NC_035784.1:49172287 587.5 2235180 3804.8 23:50:39.925 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:50:43.684 INFO ProgressMeter - NC_035784.1:49231073 587.6 2235630 3804.5 23:50:44.718 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:50:45.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:50:46.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:50:54.198 INFO ProgressMeter - NC_035784.1:49305073 587.8 2236210 3804.4 23:51:04.528 INFO ProgressMeter - NC_035784.1:49394502 588.0 2236720 3804.1 23:51:14.793 INFO ProgressMeter - NC_035784.1:49448295 588.1 2237150 3803.8 23:51:17.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:51:17.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:51:17.516 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:51:18.678 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:51:20.785 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:51:25.009 INFO ProgressMeter - NC_035784.1:49543636 588.3 2237820 3803.8 23:51:25.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:51:25.428 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:51:35.722 INFO ProgressMeter - NC_035784.1:49643522 588.5 2238390 3803.6 23:51:41.136 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:51:46.330 INFO ProgressMeter - NC_035784.1:49724131 588.7 2239070 3803.6 23:51:56.342 INFO ProgressMeter - NC_035784.1:49794299 588.8 2239630 3803.5 23:51:56.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:52:06.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:52:06.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:52:06.446 INFO ProgressMeter - NC_035784.1:49881944 589.0 2240270 3803.5 23:52:12.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:52:13.285 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:52:16.455 INFO ProgressMeter - NC_035784.1:49948193 589.2 2240770 3803.3 23:52:17.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:52:19.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:52:19.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:52:23.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:52:26.792 INFO ProgressMeter - NC_035784.1:49998982 589.3 2241140 3802.8 23:52:37.303 INFO ProgressMeter - NC_035784.1:50072388 589.5 2241630 3802.5 23:52:40.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:52:48.743 INFO ProgressMeter - NC_035784.1:50103679 589.7 2241880 3801.7 23:52:59.187 INFO ProgressMeter - NC_035784.1:50200456 589.9 2242550 3801.7 23:53:09.357 INFO ProgressMeter - NC_035784.1:50266407 590.1 2242990 3801.3 23:53:10.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:10.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.669 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:12.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:19.631 INFO ProgressMeter - NC_035784.1:50323958 590.2 2243450 3801.0 23:53:26.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:26.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:29.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:53:30.038 INFO ProgressMeter - NC_035784.1:50380889 590.4 2243890 3800.7 23:53:40.079 INFO ProgressMeter - NC_035784.1:50457378 590.6 2244460 3800.5 23:53:50.096 INFO ProgressMeter - NC_035784.1:50507831 590.7 2244860 3800.1 23:54:00.277 INFO ProgressMeter - NC_035784.1:50561137 590.9 2245280 3799.8 23:54:09.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:54:10.279 INFO ProgressMeter - NC_035784.1:50631074 591.1 2245830 3799.6 23:54:18.671 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:54:18.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:54:18.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:54:20.493 INFO ProgressMeter - NC_035784.1:50703446 591.2 2246380 3799.5 23:54:30.971 INFO ProgressMeter - NC_035784.1:50764328 591.4 2246830 3799.1 23:54:35.792 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:54:35.792 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:54:41.052 INFO ProgressMeter - NC_035784.1:50965800 591.6 2247870 3799.8 23:54:49.353 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:54:49.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:54:49.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:54:51.205 INFO ProgressMeter - NC_035784.1:51012471 591.7 2248200 3799.2 23:54:57.089 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:55:01.463 INFO ProgressMeter - NC_035784.1:51073765 591.9 2248650 3798.9 23:55:12.272 INFO ProgressMeter - NC_035784.1:51111354 592.1 2248930 3798.2 23:55:22.318 INFO ProgressMeter - NC_035784.1:51170684 592.3 2249360 3797.9 23:55:32.259 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:55:32.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:55:32.319 INFO ProgressMeter - NC_035784.1:51219757 592.4 2249740 3797.5 23:55:42.760 INFO ProgressMeter - NC_035784.1:51268601 592.6 2250110 3797.0 23:55:53.126 INFO ProgressMeter - NC_035784.1:51355206 592.8 2250740 3796.9 23:56:03.163 INFO ProgressMeter - NC_035784.1:51420037 592.9 2251270 3796.7 23:56:13.189 INFO ProgressMeter - NC_035784.1:51470119 593.1 2251660 3796.3 23:56:21.636 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:56:23.688 INFO ProgressMeter - NC_035784.1:51523404 593.3 2252060 3795.9 23:56:24.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:56:24.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:56:33.813 INFO ProgressMeter - NC_035784.1:51601993 593.5 2252630 3795.8 23:56:43.833 INFO ProgressMeter - NC_035784.1:51652769 593.6 2253030 3795.4 23:56:44.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:56:49.152 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:56:53.955 INFO ProgressMeter - NC_035784.1:51713234 593.8 2253500 3795.1 23:57:03.958 INFO ProgressMeter - NC_035784.1:51782468 594.0 2254000 3794.9 23:57:03.964 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:14.494 INFO ProgressMeter - NC_035784.1:51849592 594.1 2254490 3794.6 23:57:15.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:18.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:24.594 INFO ProgressMeter - NC_035784.1:51957971 594.3 2255300 3794.8 23:57:34.775 INFO ProgressMeter - NC_035784.1:51989773 594.5 2255560 3794.2 23:57:44.987 INFO ProgressMeter - NC_035784.1:52022939 594.6 2255820 3793.6 23:57:49.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:50.389 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:50.462 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:54.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:54.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:55.267 INFO ProgressMeter - NC_035784.1:52208584 594.8 2256780 3794.1 23:57:57.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:58.905 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:58.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:58.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:58.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:58.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:58.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:57:58.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:58:05.464 INFO ProgressMeter - NC_035784.1:52260506 595.0 2257100 3793.5 23:58:05.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:58:12.755 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:58:12.755 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:58:12.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:58:14.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:58:15.526 INFO ProgressMeter - NC_035784.1:52425790 595.2 2257980 3793.9 23:58:18.139 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:58:25.828 INFO ProgressMeter - NC_035784.1:52581928 595.3 2258810 3794.2 23:58:36.397 INFO ProgressMeter - NC_035784.1:52610349 595.5 2259000 3793.4 23:58:46.872 INFO ProgressMeter - NC_035784.1:52657307 595.7 2259350 3792.9 23:58:57.107 INFO ProgressMeter - NC_035784.1:52705314 595.8 2259710 3792.4 23:58:59.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:58:59.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:59:02.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:59:07.107 INFO ProgressMeter - NC_035784.1:52733847 596.0 2259920 3791.7 23:59:15.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:59:17.614 INFO ProgressMeter - NC_035784.1:52781552 596.2 2260250 3791.2 23:59:18.829 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:59:18.829 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 23:59:28.194 INFO ProgressMeter - NC_035784.1:52820195 596.4 2260540 3790.5 23:59:38.200 INFO ProgressMeter - NC_035784.1:52886094 596.5 2261060 3790.3 23:59:49.756 INFO ProgressMeter - NC_035784.1:52936152 596.7 2261490 3789.8 00:00:00.078 INFO ProgressMeter - NC_035784.1:52961413 596.9 2261670 3789.0 00:00:03.717 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:00:03.718 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:00:10.178 INFO ProgressMeter - NC_035784.1:53001430 597.1 2261950 3788.4 00:00:17.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:00:21.439 INFO ProgressMeter - NC_035784.1:53058102 597.3 2262360 3787.9 00:00:32.969 INFO ProgressMeter - NC_035784.1:53076220 597.4 2262510 3787.0 00:00:42.987 INFO ProgressMeter - NC_035784.1:53117158 597.6 2262810 3786.4 00:00:43.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:00:43.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:00:52.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:00:53.817 INFO ProgressMeter - NC_035784.1:53201248 597.8 2263370 3786.2 00:01:03.280 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:01:04.056 INFO ProgressMeter - NC_035784.1:53253245 598.0 2263770 3785.8 00:01:04.240 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:01:14.099 INFO ProgressMeter - NC_035784.1:53303417 598.1 2264160 3785.4 00:01:25.558 INFO ProgressMeter - NC_035784.1:53376772 598.3 2264700 3785.1 00:01:33.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:01:34.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:01:35.633 INFO ProgressMeter - NC_035784.1:53433345 598.5 2265140 3784.8 00:01:35.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:01:46.267 INFO ProgressMeter - NC_035784.1:53461154 598.7 2265320 3783.9 00:01:46.283 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:01:48.892 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:01:57.678 INFO ProgressMeter - NC_035784.1:53521408 598.9 2265730 3783.4 00:02:07.052 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:02:07.786 INFO ProgressMeter - NC_035784.1:53575306 599.0 2266120 3783.0 00:02:17.797 INFO ProgressMeter - NC_035784.1:53616133 599.2 2266450 3782.5 00:02:27.714 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:02:27.827 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:02:27.847 INFO ProgressMeter - NC_035784.1:53671634 599.4 2266840 3782.1 00:02:38.088 INFO ProgressMeter - NC_035784.1:53736435 599.5 2267300 3781.8 00:02:48.416 INFO ProgressMeter - NC_035784.1:53778961 599.7 2267630 3781.3 00:02:58.116 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:02:59.028 INFO ProgressMeter - NC_035784.1:53843745 599.9 2268130 3781.0 00:03:09.108 INFO ProgressMeter - NC_035784.1:53925780 600.0 2268800 3781.0 00:03:19.573 INFO ProgressMeter - NC_035784.1:53982224 600.2 2269250 3780.7 00:03:29.615 INFO ProgressMeter - NC_035784.1:54012558 600.4 2269470 3780.0 00:03:39.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:03:39.667 INFO ProgressMeter - NC_035784.1:54066972 600.6 2269920 3779.7 00:03:49.946 INFO ProgressMeter - NC_035784.1:54100545 600.7 2270170 3779.0 00:03:51.509 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:03:51.509 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:03:51.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:03:54.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:03:57.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:03:58.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:04:00.435 INFO ProgressMeter - NC_035784.1:54175937 600.9 2270700 3778.8 00:04:10.955 INFO ProgressMeter - NC_035784.1:54229667 601.1 2271130 3778.4 00:04:21.197 INFO ProgressMeter - NC_035784.1:54274845 601.2 2271490 3778.0 00:04:31.268 INFO ProgressMeter - NC_035784.1:54337249 601.4 2271860 3777.5 00:04:42.815 INFO ProgressMeter - NC_035784.1:54413291 601.6 2272320 3777.1 00:04:50.196 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:04:53.781 INFO ProgressMeter - NC_035784.1:54541657 601.8 2272930 3776.9 00:05:04.197 INFO ProgressMeter - NC_035784.1:54620940 602.0 2273560 3776.9 00:05:13.148 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:05:15.091 INFO ProgressMeter - NC_035784.1:54672058 602.1 2273970 3776.4 00:05:15.743 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:05:25.378 INFO ProgressMeter - NC_035784.1:54730431 602.3 2274430 3776.1 00:05:35.412 INFO ProgressMeter - NC_035784.1:54814665 602.5 2275110 3776.2 00:05:45.662 INFO ProgressMeter - NC_035784.1:54840815 602.7 2275300 3775.5 00:05:55.759 INFO ProgressMeter - NC_035784.1:54886306 602.8 2275650 3775.0 00:06:06.059 INFO ProgressMeter - NC_035784.1:54942838 603.0 2276070 3774.6 00:06:14.828 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:06:16.084 INFO ProgressMeter - NC_035784.1:54983022 603.2 2276360 3774.0 00:06:26.130 INFO ProgressMeter - NC_035784.1:55057087 603.3 2276930 3773.9 00:06:36.251 INFO ProgressMeter - NC_035784.1:55105494 603.5 2277260 3773.4 00:06:46.940 INFO ProgressMeter - NC_035784.1:55147584 603.7 2277580 3772.8 00:06:54.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:06:57.436 INFO ProgressMeter - NC_035784.1:55191065 603.9 2277910 3772.3 00:07:02.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:07:07.462 INFO ProgressMeter - NC_035784.1:55262689 604.0 2278430 3772.1 00:07:10.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:07:17.464 INFO ProgressMeter - NC_035784.1:55333221 604.2 2278940 3771.9 00:07:20.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:07:26.536 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:07:28.317 INFO ProgressMeter - NC_035784.1:55368014 604.4 2279180 3771.2 00:07:38.896 INFO ProgressMeter - NC_035784.1:55410368 604.5 2279520 3770.6 00:07:48.930 INFO ProgressMeter - NC_035784.1:55456698 604.7 2279900 3770.2 00:07:59.013 INFO ProgressMeter - NC_035784.1:55499581 604.9 2280250 3769.8 00:08:01.857 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:08:01.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:08:01.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:08:01.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:08:09.054 INFO ProgressMeter - NC_035784.1:55748786 605.0 2281450 3770.7 00:08:19.482 INFO ProgressMeter - NC_035784.1:55826318 605.2 2281930 3770.4 00:08:29.550 INFO ProgressMeter - NC_035784.1:55894510 605.4 2282420 3770.2 00:08:39.719 INFO ProgressMeter - NC_035784.1:55984375 605.6 2283160 3770.3 00:08:39.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:08:39.814 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:08:42.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:08:49.813 INFO ProgressMeter - NC_035784.1:56033609 605.7 2283560 3770.0 00:09:00.783 INFO ProgressMeter - NC_035784.1:56064694 605.9 2283810 3769.2 00:09:10.830 INFO ProgressMeter - NC_035784.1:56092742 606.1 2284050 3768.6 00:09:20.957 INFO ProgressMeter - NC_035784.1:56150361 606.2 2284480 3768.2 00:09:25.626 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:09:25.626 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:09:31.240 INFO ProgressMeter - NC_035784.1:56228473 606.4 2285120 3768.2 00:09:34.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:09:41.324 INFO ProgressMeter - NC_035784.1:56298620 606.6 2285660 3768.1 00:09:41.761 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:09:51.471 INFO ProgressMeter - NC_035784.1:56350277 606.8 2286050 3767.7 00:10:03.465 INFO ProgressMeter - NC_035784.1:56399356 607.0 2286410 3767.0 00:10:05.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:10:09.274 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:10:11.288 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:10:12.324 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:10:13.755 INFO ProgressMeter - NC_035784.1:56638789 607.1 2287690 3768.1 00:10:20.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:10:24.015 INFO ProgressMeter - NC_035784.1:56720234 607.3 2288260 3767.9 00:10:34.062 INFO ProgressMeter - NC_035784.1:56778643 607.5 2288640 3767.5 00:10:44.583 INFO ProgressMeter - NC_035784.1:56825116 607.6 2289010 3767.1 00:10:55.417 INFO ProgressMeter - NC_035784.1:56837800 607.8 2289100 3766.1 00:11:05.564 INFO ProgressMeter - NC_035784.1:56867093 608.0 2289310 3765.4 00:11:07.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:11:16.220 INFO ProgressMeter - NC_035784.1:56926486 608.2 2289680 3764.9 00:11:26.283 INFO ProgressMeter - NC_035784.1:56957902 608.3 2289920 3764.3 00:11:33.804 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:11:35.131 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:11:36.663 INFO ProgressMeter - NC_035784.1:57003702 608.5 2290250 3763.7 00:11:46.811 INFO ProgressMeter - NC_035784.1:57118079 608.7 2290940 3763.8 00:11:56.883 INFO ProgressMeter - NC_035784.1:57157331 608.8 2291240 3763.3 00:12:05.492 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:12:05.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:12:07.050 INFO ProgressMeter - NC_035784.1:57219017 609.0 2291720 3763.0 00:12:17.140 INFO ProgressMeter - NC_035784.1:57335271 609.2 2292430 3763.1 00:12:22.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:12:22.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:12:27.371 INFO ProgressMeter - NC_035784.1:57446056 609.4 2293270 3763.5 00:12:33.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:12:37.480 INFO ProgressMeter - NC_035784.1:57549245 609.5 2294080 3763.7 00:12:47.750 INFO ProgressMeter - NC_035784.1:57610034 609.7 2294590 3763.5 00:12:57.828 INFO ProgressMeter - NC_035784.1:57670261 609.9 2295010 3763.2 00:13:07.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:13:07.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:13:07.909 INFO ProgressMeter - NC_035784.1:57709854 610.0 2295300 3762.6 00:13:18.350 INFO ProgressMeter - NC_035784.1:57774494 610.2 2295800 3762.4 00:13:29.534 INFO ProgressMeter - NC_035784.1:57821975 610.4 2296140 3761.8 00:13:39.562 INFO ProgressMeter - NC_035784.1:57889143 610.6 2296720 3761.7 00:13:40.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:13:42.146 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:13:43.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:13:50.034 INFO ProgressMeter - NC_035784.1:57957054 610.7 2297140 3761.3 00:13:57.590 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:14:00.044 INFO ProgressMeter - NC_035784.1:58046446 610.9 2297790 3761.3 00:14:10.122 INFO ProgressMeter - NC_035784.1:58123576 611.1 2298380 3761.3 00:14:20.126 INFO ProgressMeter - NC_035784.1:58161776 611.2 2298660 3760.7 00:14:21.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:14:25.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:14:30.454 INFO ProgressMeter - NC_035784.1:58210664 611.4 2299010 3760.2 00:14:40.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:14:40.479 INFO ProgressMeter - NC_035784.1:58246536 611.6 2299260 3759.6 00:14:43.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:14:50.756 INFO ProgressMeter - NC_035784.1:58303749 611.7 2299670 3759.2 00:14:59.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:15:00.978 INFO ProgressMeter - NC_035784.1:58356410 611.9 2300100 3758.9 00:15:11.019 INFO ProgressMeter - NC_035784.1:58427703 612.1 2300630 3758.7 00:15:21.464 INFO ProgressMeter - NC_035784.1:58481263 612.3 2301020 3758.3 00:15:29.458 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:15:29.458 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:15:31.624 INFO ProgressMeter - NC_035784.1:58571450 612.4 2301640 3758.3 00:15:41.795 INFO ProgressMeter - NC_035784.1:58656123 612.6 2302240 3758.2 00:15:52.310 INFO ProgressMeter - NC_035784.1:58706505 612.8 2302630 3757.8 00:15:59.314 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:01.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:03.039 INFO ProgressMeter - NC_035784.1:58784766 612.9 2303250 3757.7 00:16:13.041 INFO ProgressMeter - NC_035784.1:58878967 613.1 2303920 3757.7 00:16:20.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:22.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:23.535 INFO ProgressMeter - NC_035784.1:58959659 613.3 2304570 3757.7 00:16:28.575 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:29.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:33.661 INFO ProgressMeter - NC_035784.1:59031108 613.5 2305100 3757.6 00:16:34.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:34.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:40.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:40.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:40.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:43.750 INFO ProgressMeter - NC_035784.1:59075310 613.6 2305380 3757.0 00:16:47.121 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:51.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:51.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:16:54.106 INFO ProgressMeter - NC_035784.1:59108775 613.8 2305610 3756.3 00:17:04.125 INFO ProgressMeter - NC_035784.1:59159377 614.0 2305970 3755.9 00:17:14.268 INFO ProgressMeter - NC_035784.1:59226700 614.1 2306480 3755.7 00:17:24.358 INFO ProgressMeter - NC_035784.1:59283149 614.3 2306870 3755.3 00:17:34.619 INFO ProgressMeter - NC_035784.1:59364025 614.5 2307410 3755.1 00:17:35.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:17:35.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:17:35.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:17:44.624 INFO ProgressMeter - NC_035784.1:59411203 614.6 2307720 3754.6 00:17:45.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:17:54.669 INFO ProgressMeter - NC_035784.1:59465563 614.8 2308140 3754.3 00:18:04.749 INFO ProgressMeter - NC_035784.1:59545037 615.0 2308700 3754.1 00:18:10.019 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:18:14.784 INFO ProgressMeter - NC_035784.1:59610394 615.1 2309200 3753.9 00:18:18.052 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:18:25.056 INFO ProgressMeter - NC_035784.1:59665595 615.3 2309640 3753.6 00:18:35.284 INFO ProgressMeter - NC_035784.1:59722998 615.5 2310090 3753.3 00:18:45.698 INFO ProgressMeter - NC_035784.1:59785617 615.7 2310570 3753.0 00:18:56.195 INFO ProgressMeter - NC_035784.1:59836419 615.8 2310980 3752.6 00:19:06.211 INFO ProgressMeter - NC_035784.1:59925058 616.0 2311640 3752.7 00:19:16.384 INFO ProgressMeter - NC_035784.1:59987031 616.2 2312110 3752.4 00:19:17.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:19:17.544 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:19:22.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:19:26.478 INFO ProgressMeter - NC_035784.1:60069175 616.3 2312770 3752.4 00:19:34.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:19:34.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:19:36.643 INFO ProgressMeter - NC_035784.1:60132110 616.5 2313240 3752.2 00:19:39.686 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:19:44.356 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:19:48.597 INFO ProgressMeter - NC_035784.1:60163012 616.7 2313460 3751.3 00:19:52.020 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:19:57.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:19:59.096 INFO ProgressMeter - NC_035784.1:60227398 616.9 2313870 3750.9 00:20:09.986 INFO ProgressMeter - NC_035784.1:60271853 617.1 2314210 3750.4 00:20:19.745 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:20:20.351 INFO ProgressMeter - NC_035784.1:60328034 617.2 2314630 3750.0 00:20:29.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:20:30.487 INFO ProgressMeter - NC_035784.1:60427260 617.4 2315390 3750.2 00:20:40.516 INFO ProgressMeter - NC_035784.1:60545281 617.6 2316190 3750.5 00:20:50.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:20:50.946 INFO ProgressMeter - NC_035784.1:60602249 617.7 2316610 3750.1 00:20:56.920 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:20:57.541 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:21:00.980 INFO ProgressMeter - NC_035784.1:60699264 617.9 2317290 3750.2 00:21:11.539 INFO ProgressMeter - NC_035784.1:60762486 618.1 2317790 3749.9 00:21:14.288 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:21:21.728 INFO ProgressMeter - NC_035784.1:60877628 618.3 2318670 3750.3 00:21:29.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:21:30.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:21:30.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:21:31.960 INFO ProgressMeter - NC_035784.1:60991683 618.4 2319400 3750.5 00:21:33.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:21:35.215 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:21:39.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:21:42.367 INFO ProgressMeter - NC_035784.1:61037650 618.6 2319710 3749.9 00:21:52.648 INFO ProgressMeter - NC_035784.1:61122318 618.8 2320330 3749.9 00:21:57.153 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:21:57.153 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:21:57.153 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:22:02.720 INFO ProgressMeter - NC_035784.1:61189727 618.9 2320760 3749.6 00:22:12.867 INFO ProgressMeter - NC_035784.1:61282300 619.1 2321430 3749.6 00:22:23.477 INFO ProgressMeter - NC_035784.1:61371317 619.3 2322060 3749.6 00:22:34.668 INFO ProgressMeter - NC_035784.1:61452176 619.5 2322670 3749.4 00:22:38.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:22:42.449 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:22:44.686 INFO ProgressMeter - NC_035784.1:61655778 619.6 2323720 3750.1 00:22:54.753 INFO ProgressMeter - NC_035784.1:61758867 619.8 2324580 3750.5 00:22:57.920 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:22:57.921 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:22:58.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:23:04.872 INFO ProgressMeter - NC_035784.1:61823393 620.0 2325100 3750.3 00:23:16.218 INFO ProgressMeter - NC_035784.1:61873521 620.2 2325430 3749.7 00:23:26.251 INFO ProgressMeter - NC_035784.1:61921112 620.3 2325770 3749.2 00:23:29.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:23:35.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:23:36.759 INFO ProgressMeter - NC_035784.1:61971152 620.5 2326160 3748.8 00:23:44.240 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:23:46.760 INFO ProgressMeter - NC_035784.1:62032607 620.7 2326660 3748.6 00:23:56.819 INFO ProgressMeter - NC_035784.1:62146639 620.8 2327560 3749.0 00:24:07.009 INFO ProgressMeter - NC_035784.1:62206248 621.0 2328020 3748.7 00:24:17.118 INFO ProgressMeter - NC_035784.1:62298917 621.2 2328630 3748.7 00:24:20.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:24:20.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:24:27.295 INFO ProgressMeter - NC_035784.1:62345965 621.4 2328990 3748.3 00:24:37.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:24:37.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:24:37.561 INFO ProgressMeter - NC_035784.1:62405334 621.5 2329480 3748.0 00:24:42.276 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:24:42.276 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:24:47.632 INFO ProgressMeter - NC_035784.1:62485298 621.7 2330120 3748.0 00:24:54.382 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:24:55.019 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:24:56.849 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:24:56.849 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:24:57.792 INFO ProgressMeter - NC_035784.1:62623719 621.9 2331070 3748.6 00:24:58.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:25:02.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:25:08.415 INFO ProgressMeter - NC_035784.1:62706085 622.0 2331660 3748.4 00:25:15.706 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:25:18.480 INFO ProgressMeter - NC_035784.1:62743653 622.2 2331950 3747.9 00:25:28.826 INFO ProgressMeter - NC_035784.1:62799449 622.4 2332390 3747.6 00:25:30.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:25:31.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:25:38.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:25:38.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:25:40.079 INFO ProgressMeter - NC_035784.1:62865012 622.6 2332790 3747.1 00:25:47.804 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:25:47.804 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:25:47.805 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:25:47.805 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:25:50.609 INFO ProgressMeter - NC_035784.1:62921966 622.7 2333210 3746.7 00:25:51.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:25:51.897 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:26:00.983 INFO ProgressMeter - NC_035784.1:62962290 622.9 2333510 3746.1 00:26:02.804 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:26:11.097 INFO ProgressMeter - NC_035784.1:62989436 623.1 2333700 3745.4 00:26:15.521 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:26:21.127 INFO ProgressMeter - NC_035784.1:63043543 623.2 2334100 3745.1 00:26:21.143 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:26:21.775 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:26:31.569 INFO ProgressMeter - NC_035784.1:63179730 623.4 2334940 3745.4 00:26:33.534 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:26:33.535 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:26:33.535 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:26:35.308 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:26:42.408 INFO ProgressMeter - NC_035784.1:63234704 623.6 2335390 3745.0 00:26:52.431 INFO ProgressMeter - NC_035784.1:63305350 623.8 2335970 3744.9 00:27:02.538 INFO ProgressMeter - NC_035784.1:63364718 623.9 2336470 3744.7 00:27:13.314 INFO ProgressMeter - NC_035784.1:63420684 624.1 2336860 3744.3 00:27:16.216 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:27:20.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:27:23.780 INFO ProgressMeter - NC_035784.1:63456224 624.3 2337120 3743.6 00:27:28.728 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:27:31.196 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:27:33.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:27:33.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:27:33.848 INFO ProgressMeter - NC_035784.1:63498190 624.5 2337450 3743.2 00:27:36.052 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:27:37.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:27:40.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:27:44.137 INFO ProgressMeter - NC_035784.1:63624475 624.6 2338380 3743.6 00:27:44.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:27:44.288 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:27:54.570 INFO ProgressMeter - NC_035784.1:63705513 624.8 2339000 3743.6 00:28:01.697 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:28:04.657 INFO ProgressMeter - NC_035784.1:63749365 625.0 2339310 3743.1 00:28:11.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:28:15.006 INFO ProgressMeter - NC_035784.1:63794867 625.1 2339650 3742.6 00:28:18.993 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:28:25.093 INFO ProgressMeter - NC_035784.1:63864003 625.3 2340150 3742.4 00:28:26.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:28:26.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:28:26.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:28:26.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:28:26.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:28:35.184 INFO ProgressMeter - NC_035784.1:63925390 625.5 2340640 3742.1 00:28:45.537 INFO ProgressMeter - NC_035784.1:63980085 625.7 2341090 3741.8 00:28:51.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:28:53.103 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:28:56.143 INFO ProgressMeter - NC_035784.1:64134856 625.8 2341910 3742.1 00:29:06.282 INFO ProgressMeter - NC_035784.1:64185634 626.0 2342300 3741.7 00:29:12.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:29:14.472 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:29:18.260 INFO ProgressMeter - NC_035784.1:64344315 626.2 2343170 3741.9 00:29:23.286 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:29:28.761 INFO ProgressMeter - NC_035784.1:64399205 626.4 2343610 3741.5 00:29:33.675 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:29:38.989 INFO ProgressMeter - NC_035784.1:64439583 626.5 2343920 3741.0 00:29:49.939 INFO ProgressMeter - NC_035784.1:64475195 626.7 2344200 3740.4 00:29:55.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:30:00.064 INFO ProgressMeter - NC_035784.1:64522469 626.9 2344550 3739.9 00:30:07.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:30:10.104 INFO ProgressMeter - NC_035784.1:64594974 627.1 2345090 3739.8 00:30:18.684 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:30:20.841 INFO ProgressMeter - NC_035784.1:64688087 627.2 2345810 3739.9 00:30:24.814 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:30:24.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:30:26.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:30:26.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:30:26.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:30:30.882 INFO ProgressMeter - NC_035784.1:64801474 627.4 2346620 3740.2 00:30:40.905 INFO ProgressMeter - NC_035784.1:64906588 627.6 2347460 3740.5 00:30:50.959 INFO ProgressMeter - NC_035784.1:65044503 627.7 2348540 3741.2 00:31:00.963 INFO ProgressMeter - NC_035784.1:65147433 627.9 2349380 3741.6 00:31:02.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:31:02.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:31:11.041 INFO ProgressMeter - NC_035784.1:65244469 628.1 2350150 3741.8 00:31:11.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:31:21.690 INFO ProgressMeter - NC_035784.1:65372025 628.3 2351210 3742.4 00:31:22.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:31:31.690 INFO ProgressMeter - NC_035784.1:65502944 628.4 2352160 3743.0 00:31:41.788 INFO ProgressMeter - NC_035784.1:65672209 628.6 2353380 3743.9 00:31:51.304 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:31:52.453 INFO ProgressMeter - NC_035784.1:65730508 628.8 2353860 3743.6 00:31:54.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:31:54.786 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:32:03.396 INFO ProgressMeter - NC_035784.1:65832214 629.0 2354690 3743.8 00:32:13.398 INFO ProgressMeter - NC_035784.1:65860391 629.1 2354920 3743.2 00:32:23.757 INFO ProgressMeter - NC_035784.1:65916421 629.3 2355390 3742.9 00:32:34.512 INFO ProgressMeter - NC_035784.1:65964810 629.5 2355770 3742.5 00:32:43.051 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:32:44.710 INFO ProgressMeter - NC_035784.1:66014468 629.6 2356140 3742.0 00:32:54.892 INFO ProgressMeter - NC_035784.1:66067222 629.8 2356530 3741.6 00:32:58.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:33:05.016 INFO ProgressMeter - NC_035784.1:66216347 630.0 2357710 3742.5 00:33:15.236 INFO ProgressMeter - NC_035784.1:66290720 630.1 2358330 3742.5 00:33:25.439 INFO ProgressMeter - NC_035784.1:66342522 630.3 2358700 3742.1 00:33:34.014 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:33:35.503 INFO ProgressMeter - NC_035784.1:66386359 630.5 2359060 3741.6 00:33:45.576 INFO ProgressMeter - NC_035784.1:66428367 630.7 2359410 3741.2 00:33:56.766 INFO ProgressMeter - NC_035784.1:66490199 630.8 2359920 3740.9 00:34:03.847 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:34:07.529 INFO ProgressMeter - NC_035784.1:66527535 631.0 2360220 3740.3 00:34:17.839 INFO ProgressMeter - NC_035784.1:66563285 631.2 2360510 3739.8 00:34:28.470 INFO ProgressMeter - NC_035784.1:66672693 631.4 2361330 3740.0 00:34:38.749 INFO ProgressMeter - NC_035784.1:66710890 631.5 2361610 3739.4 00:34:41.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:34:49.242 INFO ProgressMeter - NC_035784.1:66765650 631.7 2362020 3739.1 00:34:59.662 INFO ProgressMeter - NC_035784.1:66795819 631.9 2362250 3738.4 00:35:10.412 INFO ProgressMeter - NC_035784.1:66864592 632.1 2362640 3737.9 00:35:10.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:35:20.730 INFO ProgressMeter - NC_035784.1:67012679 632.2 2363490 3738.3 00:35:30.852 INFO ProgressMeter - NC_035784.1:67040816 632.4 2363680 3737.6 00:35:41.288 INFO ProgressMeter - NC_035784.1:67120801 632.6 2364300 3737.5 00:35:50.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:35:51.325 INFO ProgressMeter - NC_035784.1:67207266 632.8 2365030 3737.7 00:36:01.601 INFO ProgressMeter - NC_035784.1:67258468 632.9 2365420 3737.3 00:36:04.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:36:12.498 INFO ProgressMeter - NC_035784.1:67299173 633.1 2365740 3736.7 00:36:23.367 INFO ProgressMeter - NC_035784.1:67347436 633.3 2366130 3736.3 00:36:33.529 INFO ProgressMeter - NC_035784.1:67389401 633.5 2366460 3735.8 00:36:40.574 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:36:43.961 INFO ProgressMeter - NC_035784.1:67468377 633.6 2367070 3735.7 00:36:53.964 INFO ProgressMeter - NC_035784.1:67538506 633.8 2367560 3735.5 00:37:04.134 INFO ProgressMeter - NC_035784.1:67626005 634.0 2368060 3735.3 00:37:06.927 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:37:14.586 INFO ProgressMeter - NC_035784.1:67655635 634.1 2368290 3734.7 00:37:17.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:37:17.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:37:24.975 INFO ProgressMeter - NC_035784.1:67707064 634.3 2368650 3734.2 00:37:35.227 INFO ProgressMeter - NC_035784.1:67755365 634.5 2369010 3733.8 00:37:45.375 INFO ProgressMeter - NC_035784.1:67791680 634.7 2369310 3733.2 00:37:55.649 INFO ProgressMeter - NC_035784.1:67843713 634.8 2369710 3732.9 00:37:55.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:38:05.681 INFO ProgressMeter - NC_035784.1:67898729 635.0 2370110 3732.5 00:38:15.914 INFO ProgressMeter - NC_035784.1:67939424 635.2 2370430 3732.0 00:38:17.517 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:38:18.430 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:38:23.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:38:23.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:38:25.984 INFO ProgressMeter - NC_035784.1:68012893 635.3 2371000 3731.9 00:38:28.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:38:30.256 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:38:30.256 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:38:36.432 INFO ProgressMeter - NC_035784.1:68069196 635.5 2371390 3731.5 00:38:37.547 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:38:45.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:38:46.721 INFO ProgressMeter - NC_035784.1:68113465 635.7 2371740 3731.1 00:38:48.898 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:38:48.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:38:56.975 INFO ProgressMeter - NC_035784.1:68157166 635.8 2372080 3730.6 00:39:07.820 INFO ProgressMeter - NC_035784.1:68189698 636.0 2372330 3729.9 00:39:18.060 INFO ProgressMeter - NC_035784.1:68238604 636.2 2372750 3729.6 00:39:24.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:39:28.081 INFO ProgressMeter - NC_035784.1:68267678 636.4 2372970 3729.0 00:39:28.863 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:39:38.528 INFO ProgressMeter - NC_035784.1:68292240 636.5 2373120 3728.2 00:39:48.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:39:48.542 INFO ProgressMeter - NC_035784.1:68309642 636.7 2373240 3727.4 00:39:58.561 INFO ProgressMeter - NC_035784.1:68372940 636.9 2373570 3726.9 00:40:00.140 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:02.375 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:02.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:02.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:02.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:02.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:02.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:03.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:08.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:08.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:08.643 INFO ProgressMeter - NC_035784.1:68521613 637.0 2374560 3727.5 00:40:18.651 INFO ProgressMeter - NC_035784.1:68557640 637.2 2374810 3726.9 00:40:22.221 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:28.779 INFO ProgressMeter - NC_035784.1:68646608 637.4 2375440 3726.9 00:40:31.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:39.285 INFO ProgressMeter - NC_035784.1:68678793 637.6 2375690 3726.3 00:40:43.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:40:49.358 INFO ProgressMeter - NC_035784.1:68711248 637.7 2375930 3725.7 00:40:59.572 INFO ProgressMeter - NC_035784.1:68753220 637.9 2376240 3725.2 00:41:04.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:41:09.909 INFO ProgressMeter - NC_035784.1:68791647 638.1 2376540 3724.6 00:41:18.726 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:41:20.070 INFO ProgressMeter - NC_035784.1:68832108 638.2 2376810 3724.1 00:41:30.365 INFO ProgressMeter - NC_035784.1:68884072 638.4 2377220 3723.7 00:41:30.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:41:40.603 INFO ProgressMeter - NC_035784.1:68983839 638.6 2377910 3723.8 00:41:50.832 INFO ProgressMeter - NC_035784.1:69028492 638.7 2378260 3723.3 00:42:00.848 INFO ProgressMeter - NC_035784.1:69086604 638.9 2378740 3723.1 00:42:01.748 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:42:01.748 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:42:10.914 INFO ProgressMeter - NC_035784.1:69154966 639.1 2379250 3722.9 00:42:21.191 INFO ProgressMeter - NC_035784.1:69208833 639.2 2379680 3722.6 00:42:31.342 INFO ProgressMeter - NC_035784.1:69259767 639.4 2380080 3722.3 00:42:36.196 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:42:37.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:42:41.352 INFO ProgressMeter - NC_035784.1:69294596 639.6 2380360 3721.7 00:42:41.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:42:43.514 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:42:43.514 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:42:50.855 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:42:50.855 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:42:52.201 INFO ProgressMeter - NC_035784.1:69388766 639.8 2381130 3721.9 00:43:02.277 INFO ProgressMeter - NC_035784.1:69505894 639.9 2382120 3722.4 00:43:09.617 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:43:12.295 INFO ProgressMeter - NC_035784.1:69583817 640.1 2382710 3722.4 00:43:22.473 INFO ProgressMeter - NC_035784.1:69684676 640.3 2383550 3722.7 00:43:32.522 INFO ProgressMeter - NC_035784.1:69775317 640.4 2384300 3722.9 00:43:43.225 INFO ProgressMeter - NC_035784.1:69841605 640.6 2384780 3722.6 00:43:45.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:43:45.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:43:53.664 INFO ProgressMeter - NC_035784.1:69875282 640.8 2385020 3722.0 00:44:03.721 INFO ProgressMeter - NC_035784.1:69921574 641.0 2385370 3721.6 00:44:14.482 INFO ProgressMeter - NC_035784.1:69964216 641.1 2385720 3721.1 00:44:15.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:44:17.324 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:44:24.571 INFO ProgressMeter - NC_035784.1:70058467 641.3 2386480 3721.3 00:44:34.979 INFO ProgressMeter - NC_035784.1:70127476 641.5 2387060 3721.2 00:44:42.042 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:44:44.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:44:45.123 INFO ProgressMeter - NC_035784.1:70187575 641.6 2387550 3721.0 00:44:51.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:44:55.194 INFO ProgressMeter - NC_035784.1:70240614 641.8 2387970 3720.6 00:44:55.216 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:45:05.261 INFO ProgressMeter - NC_035784.1:70321823 642.0 2388610 3720.7 00:45:15.826 INFO ProgressMeter - NC_035784.1:70373237 642.2 2388990 3720.2 00:45:25.847 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:45:25.847 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:45:25.849 INFO ProgressMeter - NC_035784.1:70444462 642.3 2389530 3720.1 00:45:35.876 INFO ProgressMeter - NC_035784.1:70539950 642.5 2390290 3720.3 00:45:36.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:45:41.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:45:42.573 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:45:42.573 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:45:44.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:45:45.903 INFO ProgressMeter - NC_035784.1:70645603 642.7 2391130 3720.7 00:45:55.991 INFO ProgressMeter - NC_035784.1:70723440 642.8 2391690 3720.6 00:46:05.995 INFO ProgressMeter - NC_035784.1:70768677 643.0 2392010 3720.1 00:46:13.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:46:16.499 INFO ProgressMeter - NC_035784.1:70859091 643.2 2392670 3720.1 00:46:26.660 INFO ProgressMeter - NC_035784.1:70950299 643.3 2393250 3720.0 00:46:30.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:46:30.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:46:32.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:46:34.647 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:46:36.695 INFO ProgressMeter - NC_035784.1:71015436 643.5 2393730 3719.8 00:46:39.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:46:46.861 INFO ProgressMeter - NC_035784.1:71081088 643.7 2394240 3719.6 00:46:56.943 INFO ProgressMeter - NC_035784.1:71213337 643.8 2395260 3720.2 00:46:59.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:47:06.950 INFO ProgressMeter - NC_035784.1:71369460 644.0 2396390 3721.0 00:47:17.058 INFO ProgressMeter - NC_035784.1:71536513 644.2 2397720 3722.1 00:47:27.328 INFO ProgressMeter - NC_035784.1:71623720 644.4 2398440 3722.3 00:47:37.426 INFO ProgressMeter - NC_035784.1:71721746 644.5 2399260 3722.6 00:47:47.495 INFO ProgressMeter - NC_035784.1:71841883 644.7 2400140 3723.0 00:47:57.894 INFO ProgressMeter - NC_035784.1:71911532 644.9 2400670 3722.8 00:48:00.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:48:06.095 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:48:08.202 INFO ProgressMeter - NC_035784.1:71961006 645.0 2401020 3722.3 00:48:10.860 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:48:10.985 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:48:18.986 INFO ProgressMeter - NC_035784.1:72023629 645.2 2401520 3722.1 00:48:22.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:48:22.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:48:25.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:48:29.518 INFO ProgressMeter - NC_035784.1:72126930 645.4 2402200 3722.1 00:48:41.018 INFO ProgressMeter - NC_035784.1:72197241 645.6 2402670 3721.7 00:48:51.316 INFO ProgressMeter - NC_035784.1:72228108 645.8 2402880 3721.1 00:49:01.362 INFO ProgressMeter - NC_035784.1:72309485 645.9 2403520 3721.1 00:49:11.405 INFO ProgressMeter - NC_035784.1:72446572 646.1 2404590 3721.8 00:49:21.474 INFO ProgressMeter - NC_035784.1:72515902 646.3 2405170 3721.7 00:49:31.676 INFO ProgressMeter - NC_035784.1:72553745 646.4 2405460 3721.2 00:49:42.354 INFO ProgressMeter - NC_035784.1:72587984 646.6 2405700 3720.5 00:49:48.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:49:52.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:49:52.421 INFO ProgressMeter - NC_035784.1:72625680 646.8 2405960 3720.0 00:49:52.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:49:52.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:49:57.676 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:49:57.676 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:50:02.523 INFO ProgressMeter - NC_035784.1:72689455 646.9 2406470 3719.8 00:50:12.642 INFO ProgressMeter - NC_035784.1:72739141 647.1 2406860 3719.4 00:50:16.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:50:16.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:50:18.905 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:50:23.033 INFO ProgressMeter - NC_035784.1:72783998 647.3 2407210 3719.0 00:50:33.111 INFO ProgressMeter - NC_035784.1:72839021 647.4 2407620 3718.6 00:50:37.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:50:37.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:50:43.519 INFO ProgressMeter - NC_035784.1:72900517 647.6 2408080 3718.3 00:50:50.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:50:53.795 INFO ProgressMeter - NC_035784.1:73016835 647.8 2408860 3718.6 00:51:03.863 INFO ProgressMeter - NC_035784.1:73063394 648.0 2409250 3718.2 00:51:14.082 INFO ProgressMeter - NC_035784.1:73116363 648.1 2409650 3717.8 00:51:23.285 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:51:25.508 INFO ProgressMeter - NC_035784.1:73200089 648.3 2410230 3717.7 00:51:33.574 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:51:36.320 INFO ProgressMeter - NC_035784.1:73247934 648.5 2410610 3717.2 00:51:46.720 INFO ProgressMeter - NC_035784.1:73294813 648.7 2410950 3716.7 00:51:56.732 INFO ProgressMeter - NC_035784.1:73388200 648.8 2411680 3716.9 00:52:02.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:52:06.837 INFO ProgressMeter - NC_035784.1:73469745 649.0 2412330 3716.9 00:52:17.322 INFO ProgressMeter - NC_035784.1:73521110 649.2 2412730 3716.6 00:52:27.781 INFO ProgressMeter - NC_035784.1:73553169 649.4 2412950 3715.9 00:52:37.978 INFO ProgressMeter - NC_035784.1:73611175 649.5 2413380 3715.6 00:52:45.872 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:52:45.872 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:52:48.058 INFO ProgressMeter - NC_035784.1:73699325 649.7 2414070 3715.7 00:52:51.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:52:58.080 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:52:58.109 INFO ProgressMeter - NC_035784.1:73779759 649.9 2414660 3715.6 00:53:07.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:53:08.548 INFO ProgressMeter - NC_035784.1:73832057 650.0 2415020 3715.2 00:53:18.624 INFO ProgressMeter - NC_035784.1:73900482 650.2 2415530 3715.0 00:53:23.361 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:53:28.689 INFO ProgressMeter - NC_035784.1:73957207 650.4 2416000 3714.8 00:53:29.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:53:34.962 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:53:38.815 INFO ProgressMeter - NC_035784.1:73998607 650.5 2416310 3714.3 00:53:44.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:53:48.978 INFO ProgressMeter - NC_035784.1:74085668 650.7 2416950 3714.3 00:53:59.133 INFO ProgressMeter - NC_035784.1:74137728 650.9 2417370 3714.0 00:54:09.743 INFO ProgressMeter - NC_035784.1:74191335 651.1 2417780 3713.6 00:54:18.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:18.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:20.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:20.149 INFO ProgressMeter - NC_035784.1:74253578 651.2 2418230 3713.3 00:54:22.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:22.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:25.246 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:26.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:26.826 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:27.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:27.987 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:30.166 INFO ProgressMeter - NC_035784.1:74504546 651.4 2419570 3714.4 00:54:34.485 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:34.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:34.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:34.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:34.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:34.897 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:35.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:37.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:37.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:37.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:40.176 INFO ProgressMeter - NC_035784.1:74847781 651.6 2421260 3716.1 00:54:45.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:54:50.270 INFO ProgressMeter - NC_035784.1:74888442 651.7 2421540 3715.5 00:54:58.908 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:55:00.296 INFO ProgressMeter - NC_035784.1:74983552 651.9 2422190 3715.6 00:55:10.686 INFO ProgressMeter - NC_035784.1:75010710 652.1 2422400 3714.9 00:55:21.100 INFO ProgressMeter - NC_035784.1:75117879 652.2 2423090 3715.0 00:55:25.674 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:55:31.104 INFO ProgressMeter - NC_035784.1:75173398 652.4 2423500 3714.7 00:55:41.529 INFO ProgressMeter - NC_035784.1:75244487 652.6 2424020 3714.5 00:55:46.459 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:55:51.614 INFO ProgressMeter - NC_035784.1:75325365 652.8 2424590 3714.4 00:55:51.817 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:55:53.828 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:55:58.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:56:01.161 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:56:02.092 INFO ProgressMeter - NC_035784.1:75422089 652.9 2425150 3714.3 00:56:12.154 INFO ProgressMeter - NC_035784.1:75443564 653.1 2425320 3713.6 00:56:22.275 INFO ProgressMeter - NC_035784.1:75513269 653.3 2425850 3713.4 00:56:32.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:56:32.449 INFO ProgressMeter - NC_035784.1:75583295 653.4 2426420 3713.3 00:56:42.526 INFO ProgressMeter - NC_035784.1:75675734 653.6 2427080 3713.4 00:56:52.682 INFO ProgressMeter - NC_035784.1:75779236 653.8 2427850 3713.6 00:57:02.698 INFO ProgressMeter - NC_035784.1:75857697 653.9 2428440 3713.5 00:57:05.143 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:05.278 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:05.361 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:05.573 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:12.980 INFO ProgressMeter - NC_035784.1:75921898 654.1 2428930 3713.3 00:57:23.702 INFO ProgressMeter - NC_035784.1:75944483 654.3 2429100 3712.6 00:57:23.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:23.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:33.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:33.875 INFO ProgressMeter - NC_035784.1:76065954 654.5 2429810 3712.7 00:57:34.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:34.143 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:34.358 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:36.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:42.531 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:42.531 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:43.923 INFO ProgressMeter - NC_035784.1:76147507 654.6 2430410 3712.7 00:57:47.888 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:47.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:53.959 INFO ProgressMeter - NC_035784.1:76199365 654.8 2430760 3712.2 00:57:55.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:58.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:57:58.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:04.297 INFO ProgressMeter - NC_035784.1:76274333 655.0 2431250 3712.0 00:58:06.096 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:07.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:14.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:14.667 INFO ProgressMeter - NC_035784.1:76388323 655.1 2432000 3712.2 00:58:15.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:15.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:18.236 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:18.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:18.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:18.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:24.857 INFO ProgressMeter - NC_035784.1:76551760 655.3 2432970 3712.7 00:58:24.925 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:26.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:34.069 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:35.091 INFO ProgressMeter - NC_035784.1:76646585 655.5 2433570 3712.7 00:58:36.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:36.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:45.308 INFO ProgressMeter - NC_035784.1:76725165 655.7 2434080 3712.5 00:58:53.773 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:58:55.607 INFO ProgressMeter - NC_035784.1:76808807 655.8 2434660 3712.4 00:58:56.296 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:59:05.658 INFO ProgressMeter - NC_035784.1:76887728 656.0 2435220 3712.3 00:59:09.560 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:59:15.962 INFO ProgressMeter - NC_035784.1:76986376 656.2 2435970 3712.5 00:59:26.130 INFO ProgressMeter - NC_035784.1:77049248 656.3 2436420 3712.2 00:59:27.315 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:59:27.315 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:59:27.316 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:59:27.316 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:59:34.443 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:59:36.447 INFO ProgressMeter - NC_035784.1:77126072 656.5 2436960 3712.0 00:59:46.781 INFO ProgressMeter - NC_035784.1:77216730 656.7 2437760 3712.3 00:59:57.458 INFO ProgressMeter - NC_035784.1:77343992 656.9 2438550 3712.5 00:59:59.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 00:59:59.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:00:02.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:00:02.421 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:00:02.421 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:00:08.315 INFO ProgressMeter - NC_035784.1:77448444 657.0 2439150 3712.4 01:00:18.514 INFO ProgressMeter - NC_035784.1:77526097 657.2 2439670 3712.2 01:00:28.533 INFO ProgressMeter - NC_035784.1:77562526 657.4 2439940 3711.7 01:00:29.108 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:00:38.644 INFO ProgressMeter - NC_035784.1:77631968 657.5 2440450 3711.5 01:00:48.946 INFO ProgressMeter - NC_035784.1:77697490 657.7 2440960 3711.3 01:00:59.230 INFO ProgressMeter - NC_035784.1:77872327 657.9 2442310 3712.4 01:01:09.419 INFO ProgressMeter - NC_035784.1:77926311 658.1 2442700 3712.0 01:01:14.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:01:19.697 INFO ProgressMeter - NC_035784.1:77995243 658.2 2443200 3711.8 01:01:20.371 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:01:30.243 INFO ProgressMeter - NC_035784.1:78057421 658.4 2443690 3711.6 01:01:34.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:01:35.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:01:35.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:01:40.294 INFO ProgressMeter - NC_035784.1:78101909 658.6 2443970 3711.0 01:01:46.570 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:01:50.303 INFO ProgressMeter - NC_035784.1:78183446 658.7 2444540 3711.0 01:02:00.355 INFO ProgressMeter - NC_035784.1:78236400 658.9 2444970 3710.7 01:02:04.523 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:04.523 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:04.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:06.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:10.491 INFO ProgressMeter - NC_035784.1:78308412 659.1 2445480 3710.5 01:02:13.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:13.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:13.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:13.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:13.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:13.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:13.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:13.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:13.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:13.943 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:17.077 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:20.822 INFO ProgressMeter - NC_035784.1:78528990 659.2 2446800 3711.5 01:02:30.971 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:30.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:30.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:30.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:30.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:31.111 INFO ProgressMeter - NC_035784.1:78657354 659.4 2447440 3711.5 01:02:41.161 INFO ProgressMeter - NC_035784.1:78726574 659.6 2447910 3711.3 01:02:51.355 INFO ProgressMeter - NC_035784.1:78878669 659.8 2448840 3711.8 01:02:51.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:02:55.831 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:03:01.360 INFO ProgressMeter - NC_035784.1:78930607 659.9 2449210 3711.4 01:03:04.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:03:04.553 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:03:11.710 INFO ProgressMeter - NC_035784.1:78994003 660.1 2449710 3711.2 01:03:21.757 INFO ProgressMeter - NC_035784.1:79047366 660.3 2450100 3710.8 01:03:24.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:03:32.026 INFO ProgressMeter - NC_035784.1:79106295 660.4 2450550 3710.5 01:03:40.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:03:40.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:03:42.347 INFO ProgressMeter - NC_035784.1:79259064 660.6 2451520 3711.0 01:03:45.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:03:52.405 INFO ProgressMeter - NC_035784.1:79355648 660.8 2452210 3711.1 01:03:54.629 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:04:02.473 INFO ProgressMeter - NC_035784.1:79429047 660.9 2452750 3711.0 01:04:06.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:04:12.900 INFO ProgressMeter - NC_035784.1:79471566 661.1 2453080 3710.5 01:04:23.123 INFO ProgressMeter - NC_035784.1:79513423 661.3 2453400 3710.1 01:04:33.509 INFO ProgressMeter - NC_035784.1:79546953 661.5 2453650 3709.5 01:04:43.725 INFO ProgressMeter - NC_035784.1:79574096 661.6 2453860 3708.8 01:04:54.490 INFO ProgressMeter - NC_035784.1:79648043 661.8 2454420 3708.7 01:05:04.611 INFO ProgressMeter - NC_035784.1:79724208 662.0 2455000 3708.6 01:05:15.311 INFO ProgressMeter - NC_035784.1:79824409 662.2 2455780 3708.8 01:05:23.719 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:05:23.719 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:05:25.397 INFO ProgressMeter - NC_035784.1:79991565 662.3 2456740 3709.3 01:05:26.448 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:05:27.443 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:05:35.476 INFO ProgressMeter - NC_035784.1:80123462 662.5 2457430 3709.4 01:05:45.477 INFO ProgressMeter - NC_035784.1:80197843 662.7 2457970 3709.3 01:05:55.503 INFO ProgressMeter - NC_035784.1:80341503 662.8 2458820 3709.6 01:06:05.736 INFO ProgressMeter - NC_035784.1:80533316 663.0 2460180 3710.7 01:06:05.785 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:11.880 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:15.858 INFO ProgressMeter - NC_035784.1:80699970 663.2 2461200 3711.3 01:06:18.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:22.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:22.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:26.111 INFO ProgressMeter - NC_035784.1:80899487 663.3 2462290 3712.0 01:06:27.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:27.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:27.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:28.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:29.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:31.574 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:33.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:35.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:36.192 INFO ProgressMeter - NC_035784.1:81006791 663.5 2463050 3712.2 01:06:37.130 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:39.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:45.752 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:46.527 INFO ProgressMeter - NC_035784.1:81123187 663.7 2463800 3712.4 01:06:47.075 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:50.284 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:50.284 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:56.640 INFO ProgressMeter - NC_035784.1:81356985 663.8 2465290 3713.7 01:06:58.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:06:58.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:02.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:02.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:06.891 INFO ProgressMeter - NC_035784.1:81505406 664.0 2466230 3714.1 01:07:16.966 INFO ProgressMeter - NC_035784.1:81601940 664.2 2466850 3714.1 01:07:20.846 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:22.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:23.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:23.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:23.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:23.019 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:23.019 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:23.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:27.242 INFO ProgressMeter - NC_035784.1:81707578 664.3 2467520 3714.2 01:07:35.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:37.542 INFO ProgressMeter - NC_035784.1:81765158 664.5 2467970 3713.9 01:07:38.837 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:38.837 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:42.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:44.020 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:47.569 INFO ProgressMeter - NC_035784.1:81846199 664.7 2468590 3713.9 01:07:55.865 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:07:58.026 INFO ProgressMeter - NC_035784.1:81889746 664.9 2468970 3713.5 01:08:05.719 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:08:05.719 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:08:08.888 INFO ProgressMeter - NC_035784.1:81960779 665.0 2469550 3713.4 01:08:20.011 INFO ProgressMeter - NC_035784.1:82016605 665.2 2469990 3713.0 01:08:29.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:08:30.487 INFO ProgressMeter - NC_035784.1:82062247 665.4 2470280 3712.5 01:08:40.546 INFO ProgressMeter - NC_035784.1:82102960 665.6 2470560 3711.9 01:08:51.054 INFO ProgressMeter - NC_035784.1:82165798 665.7 2470960 3711.6 01:09:01.618 INFO ProgressMeter - NC_035784.1:82214408 665.9 2471320 3711.1 01:09:11.937 INFO ProgressMeter - NC_035784.1:82248015 666.1 2471600 3710.6 01:09:16.036 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:09:21.941 INFO ProgressMeter - NC_035784.1:82325305 666.3 2472220 3710.6 01:09:31.953 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:09:32.288 INFO ProgressMeter - NC_035784.1:82409393 666.4 2472880 3710.6 01:09:34.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:09:42.401 INFO ProgressMeter - NC_035784.1:82467048 666.6 2473350 3710.4 01:09:52.564 INFO ProgressMeter - NC_035784.1:82529494 666.8 2473820 3710.1 01:09:52.855 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:09:54.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:10:02.765 INFO ProgressMeter - NC_035784.1:82606963 666.9 2474370 3710.0 01:10:03.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:10:09.903 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:10:09.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:10:09.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:10:11.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:10:11.666 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:10:13.465 INFO ProgressMeter - NC_035784.1:82677828 667.1 2474860 3709.8 01:10:23.503 INFO ProgressMeter - NC_035784.1:82728805 667.3 2475270 3709.5 01:10:33.538 INFO ProgressMeter - NC_035784.1:82809976 667.5 2475890 3709.5 01:10:42.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:10:42.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:10:43.666 INFO ProgressMeter - NC_035784.1:82868186 667.6 2476370 3709.2 01:10:51.082 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:10:54.080 INFO ProgressMeter - NC_035784.1:82976469 667.8 2477120 3709.4 01:11:04.469 INFO ProgressMeter - NC_035784.1:83038757 668.0 2477560 3709.1 01:11:14.518 INFO ProgressMeter - NC_035784.1:83106609 668.1 2478020 3708.8 01:11:14.884 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:11:14.884 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:11:24.811 INFO ProgressMeter - NC_035784.1:83175939 668.3 2478540 3708.7 01:11:34.817 INFO ProgressMeter - NC_035784.1:83293394 668.5 2479460 3709.1 01:11:44.885 INFO ProgressMeter - NC_035784.1:83340995 668.6 2479790 3708.7 01:11:47.464 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:11:54.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:11:54.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:11:54.978 INFO ProgressMeter - NC_035784.1:83388712 668.8 2480180 3708.3 01:11:59.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:12:03.872 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:12:05.695 INFO ProgressMeter - NC_035784.1:83433753 669.0 2480520 3707.9 01:12:15.700 INFO ProgressMeter - NC_035784.1:83501375 669.2 2481030 3707.7 01:12:25.881 INFO ProgressMeter - NC_035784.1:83540096 669.3 2481320 3707.2 01:12:29.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:12:36.713 INFO ProgressMeter - NC_035784.1:83670721 669.5 2481920 3707.1 01:12:40.426 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:12:46.877 INFO ProgressMeter - NC_035784.1:83778119 669.7 2482480 3707.0 01:12:57.187 INFO ProgressMeter - NC_035784.1:83844582 669.8 2482860 3706.6 01:13:00.345 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:05.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:06.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:06.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:06.268 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:06.268 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:07.379 INFO ProgressMeter - NC_035784.1:84079641 670.0 2484280 3707.8 01:13:07.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:07.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:08.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:08.955 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:11.849 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:13.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:13.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:17.472 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:17.501 INFO ProgressMeter - NC_035784.1:84329768 670.2 2485500 3708.7 01:13:18.953 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:20.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:23.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:24.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:24.626 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:24.626 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:27.234 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:27.234 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:27.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:27.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:27.869 INFO ProgressMeter - NC_035784.1:84746182 670.4 2487410 3710.6 01:13:28.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:28.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:28.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:29.313 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:29.431 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:29.431 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:29.480 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:29.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:36.534 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:37.971 INFO ProgressMeter - NC_035784.1:85084988 670.5 2489270 3712.4 01:13:39.252 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:46.575 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:13:48.073 INFO ProgressMeter - NC_035784.1:85242180 670.7 2490230 3712.9 01:13:58.749 INFO ProgressMeter - NC_035784.1:85358209 670.9 2491060 3713.2 01:14:08.911 INFO ProgressMeter - NC_035784.1:85417175 671.0 2491500 3712.9 01:14:14.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:14:15.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:14:18.995 INFO ProgressMeter - NC_035784.1:85483315 671.2 2492020 3712.7 01:14:29.237 INFO ProgressMeter - NC_035784.1:85570433 671.4 2492750 3712.9 01:14:39.266 INFO ProgressMeter - NC_035784.1:85642446 671.6 2493320 3712.8 01:14:41.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:14:41.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:14:49.594 INFO ProgressMeter - NC_035784.1:85693261 671.7 2493730 3712.4 01:14:59.930 INFO ProgressMeter - NC_035784.1:85782648 671.9 2494480 3712.6 01:15:09.999 INFO ProgressMeter - NC_035784.1:85876420 672.1 2495220 3712.8 01:15:10.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:15:14.880 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:15:19.925 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:15:20.448 INFO ProgressMeter - NC_035784.1:85960467 672.2 2495920 3712.9 01:15:24.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:15:30.841 INFO ProgressMeter - NC_035784.1:86077702 672.4 2496880 3713.3 01:15:39.547 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:15:41.088 INFO ProgressMeter - NC_035784.1:86135158 672.6 2497320 3713.0 01:15:51.109 INFO ProgressMeter - NC_035784.1:86262176 672.7 2498420 3713.8 01:15:59.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:16:01.951 INFO ProgressMeter - NC_035784.1:86389589 672.9 2499520 3714.4 01:16:13.031 INFO ProgressMeter - NC_035784.1:86490081 673.1 2500340 3714.6 01:16:23.043 INFO ProgressMeter - NC_035784.1:86634372 673.3 2501510 3715.4 01:16:26.411 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:16:29.277 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:16:33.268 INFO ProgressMeter - NC_035784.1:86753201 673.5 2502500 3715.9 01:16:33.607 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:16:35.412 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:16:35.428 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:16:40.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:16:43.294 INFO ProgressMeter - NC_035784.1:86930994 673.6 2503990 3717.2 01:16:50.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:16:53.631 INFO ProgressMeter - NC_035784.1:86983861 673.8 2504400 3716.9 01:16:54.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:17:03.679 INFO ProgressMeter - NC_035784.1:87104218 674.0 2505300 3717.3 01:17:13.964 INFO ProgressMeter - NC_035784.1:87175227 674.1 2505890 3717.2 01:17:20.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:17:23.968 INFO ProgressMeter - NC_035784.1:87238432 674.3 2506310 3716.9 01:17:34.380 INFO ProgressMeter - NC_035784.1:87291536 674.5 2506710 3716.6 01:17:43.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:17:44.600 INFO ProgressMeter - NC_035784.1:87354861 674.6 2507220 3716.4 01:17:54.681 INFO ProgressMeter - NC_035784.1:87407083 674.8 2507650 3716.1 01:17:59.874 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:17:59.874 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:17:59.874 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:04.899 INFO ProgressMeter - NC_035784.1:87506620 675.0 2508410 3716.3 01:18:05.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:15.056 INFO ProgressMeter - NC_035784.1:87564143 675.1 2508870 3716.0 01:18:25.865 INFO ProgressMeter - NC_035784.1:87622213 675.3 2509360 3715.8 01:18:33.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:33.985 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:36.284 INFO ProgressMeter - NC_035784.1:87725572 675.5 2510060 3715.9 01:18:40.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:40.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:40.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:40.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:40.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:40.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:40.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:40.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:40.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:43.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:43.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:43.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:45.144 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:45.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:46.607 INFO ProgressMeter - NC_035784.1:87798440 675.7 2510540 3715.6 01:18:49.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:49.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:18:56.772 INFO ProgressMeter - NC_035784.1:87892585 675.8 2511210 3715.7 01:19:06.850 INFO ProgressMeter - NC_035784.1:87958443 676.0 2511740 3715.5 01:19:10.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:19:10.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:19:10.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:19:17.043 INFO ProgressMeter - NC_035784.1:88140394 676.2 2512650 3716.0 01:19:27.618 INFO ProgressMeter - NC_035784.1:88170752 676.4 2512860 3715.3 01:19:34.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:19:34.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:19:35.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:19:37.759 INFO ProgressMeter - NC_035784.1:88253755 676.5 2513500 3715.3 01:19:47.976 INFO ProgressMeter - NC_035784.1:88264319 676.7 2513580 3714.5 01:19:58.494 INFO ProgressMeter - NC_035784.1:88377522 676.9 2514300 3714.6 01:19:58.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:20:04.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:20:04.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:20:08.647 INFO ProgressMeter - NC_035784.1:88443712 677.0 2514840 3714.5 01:20:17.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:20:19.149 INFO ProgressMeter - NC_035784.1:88522297 677.2 2515460 3714.4 01:20:29.166 INFO ProgressMeter - NC_035784.1:88592323 677.4 2515990 3714.3 01:20:31.495 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:20:34.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:20:35.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:20:35.143 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:20:35.256 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:20:36.212 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:20:39.188 INFO ProgressMeter - NC_035784.1:88723346 677.5 2516870 3714.7 01:20:49.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:20:49.440 INFO ProgressMeter - NC_035784.1:88762601 677.7 2517170 3714.2 01:20:59.568 INFO ProgressMeter - NC_035784.1:88857625 677.9 2517820 3714.2 01:21:04.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:21:04.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:21:04.417 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:21:05.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:21:09.605 INFO ProgressMeter - NC_035784.1:89004345 678.1 2518900 3714.9 01:21:17.793 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:21:19.888 INFO ProgressMeter - NC_035784.1:89059099 678.2 2519310 3714.6 01:21:26.443 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:21:30.390 INFO ProgressMeter - NC_035784.1:89078718 678.4 2519450 3713.8 01:21:40.458 INFO ProgressMeter - NC_035784.1:89126576 678.6 2519820 3713.4 01:21:50.465 INFO ProgressMeter - NC_035784.1:89236003 678.7 2520550 3713.6 01:21:57.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:21:57.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:21:58.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:21:59.754 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:21:59.754 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:22:00.532 INFO ProgressMeter - NC_035784.1:89351121 678.9 2521370 3713.9 01:22:06.385 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:22:10.610 INFO ProgressMeter - NC_035784.1:89396773 679.1 2521690 3713.4 01:22:10.681 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:22:21.242 INFO ProgressMeter - NC_035784.1:89473694 679.2 2522290 3713.3 01:22:29.395 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:22:29.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:22:31.762 INFO ProgressMeter - NC_035784.1:89547364 679.4 2522920 3713.3 01:22:37.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:22:41.777 INFO ProgressMeter - NC_035784.1:89664529 679.6 2523770 3713.7 01:22:52.113 INFO ProgressMeter - NC_035784.1:89698618 679.8 2524030 3713.1 01:22:52.993 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:23:02.629 INFO ProgressMeter - NC_035784.1:89915055 679.9 2525130 3713.8 01:23:03.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:23:12.855 INFO ProgressMeter - NC_035784.1:89955429 680.1 2525420 3713.3 01:23:22.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:23:23.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:23:23.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:23:23.400 INFO ProgressMeter - NC_035784.1:90018185 680.3 2525910 3713.0 01:23:34.024 INFO ProgressMeter - NC_035784.1:90053459 680.5 2526130 3712.4 01:23:44.823 INFO ProgressMeter - NC_035784.1:90071916 680.6 2526260 3711.6 01:23:55.022 INFO ProgressMeter - NC_035784.1:90093088 680.8 2526410 3710.9 01:24:06.310 INFO ProgressMeter - NC_035784.1:90136206 681.0 2526720 3710.3 01:24:13.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:24:16.319 INFO ProgressMeter - NC_035784.1:90227669 681.2 2527390 3710.4 01:24:26.429 INFO ProgressMeter - NC_035784.1:90292162 681.3 2527880 3710.2 01:24:26.521 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:24:34.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:24:36.442 INFO ProgressMeter - NC_035784.1:90416085 681.5 2528640 3710.4 01:24:46.713 INFO ProgressMeter - NC_035784.1:90490105 681.7 2529140 3710.2 01:24:46.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:24:55.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:24:56.980 INFO ProgressMeter - NC_035784.1:90589995 681.8 2529810 3710.2 01:25:06.996 INFO ProgressMeter - NC_035784.1:90645960 682.0 2530120 3709.8 01:25:19.234 INFO ProgressMeter - NC_035784.1:90676046 682.2 2530320 3709.0 01:25:29.757 INFO ProgressMeter - NC_035784.1:90686890 682.4 2530390 3708.1 01:25:36.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:25:36.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:25:40.395 INFO ProgressMeter - NC_035784.1:90728071 682.6 2530620 3707.5 01:25:40.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:25:50.400 INFO ProgressMeter - NC_035784.1:90833656 682.7 2531190 3707.4 01:25:55.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:25:58.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:25:58.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:25:58.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:26:00.426 INFO ProgressMeter - NC_035784.1:90911430 682.9 2531810 3707.4 01:26:02.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:26:10.620 INFO ProgressMeter - NC_035784.1:90983413 683.1 2532360 3707.3 01:26:20.803 INFO ProgressMeter - NC_035784.1:91046297 683.2 2532860 3707.1 01:26:22.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:26:25.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:26:25.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:26:25.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:26:31.184 INFO ProgressMeter - NC_035784.1:91199879 683.4 2533690 3707.4 01:26:41.592 INFO ProgressMeter - NC_035784.1:91232317 683.6 2533900 3706.8 01:26:48.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:26:48.336 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:26:52.852 INFO ProgressMeter - NC_035784.1:91289051 683.8 2534230 3706.2 01:27:02.912 INFO ProgressMeter - NC_035784.1:91405912 683.9 2534990 3706.4 01:27:11.500 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:12.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:12.963 INFO ProgressMeter - NC_035784.1:91449273 684.1 2535330 3706.0 01:27:13.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:18.719 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:18.719 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:23.211 INFO ProgressMeter - NC_035784.1:91535461 684.3 2536010 3706.1 01:27:29.714 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:29.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:29.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:33.222 INFO ProgressMeter - NC_035784.1:91693137 684.4 2537060 3706.7 01:27:34.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:34.573 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:34.714 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:35.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:35.058 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:35.058 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:35.058 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:40.486 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:43.542 INFO ProgressMeter - NC_035784.1:91942376 684.6 2538550 3708.0 01:27:44.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:44.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:51.318 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:52.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:52.411 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:27:53.545 INFO ProgressMeter - NC_035784.1:92020505 684.8 2539010 3707.7 01:28:01.553 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:28:01.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:28:01.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:28:03.547 INFO ProgressMeter - NC_035784.1:92180485 685.0 2539890 3708.1 01:28:06.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:28:06.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:28:06.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:28:12.410 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:28:13.714 INFO ProgressMeter - NC_035784.1:92348551 685.1 2540750 3708.5 01:28:23.727 INFO ProgressMeter - NC_035784.1:92412574 685.3 2541230 3708.2 01:28:23.823 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:28:28.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:28:28.404 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:28:34.398 INFO ProgressMeter - NC_035784.1:92587997 685.5 2542450 3709.1 01:28:44.782 INFO ProgressMeter - NC_035784.1:92680191 685.6 2543150 3709.2 01:28:55.143 INFO ProgressMeter - NC_035784.1:92758898 685.8 2543820 3709.2 01:28:55.967 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:29:05.174 INFO ProgressMeter - NC_035784.1:92830486 686.0 2544400 3709.1 01:29:09.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:29:15.226 INFO ProgressMeter - NC_035784.1:92921698 686.1 2544980 3709.1 01:29:26.059 INFO ProgressMeter - NC_035784.1:92993927 686.3 2545510 3708.9 01:29:36.446 INFO ProgressMeter - NC_035784.1:93065048 686.5 2546060 3708.7 01:29:40.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:29:40.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:29:44.850 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:29:46.595 INFO ProgressMeter - NC_035784.1:93094341 686.7 2546250 3708.1 01:29:50.766 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:29:52.643 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:29:53.517 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:29:58.034 INFO ProgressMeter - NC_035784.1:93113599 686.9 2546390 3707.3 01:30:08.068 INFO ProgressMeter - NC_035784.1:93141584 687.0 2546630 3706.7 01:30:11.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:30:18.673 INFO ProgressMeter - NC_035784.1:93169078 687.2 2546840 3706.1 01:30:23.994 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:30:23.994 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:30:26.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:30:28.725 INFO ProgressMeter - NC_035784.1:93230911 687.4 2547290 3705.8 01:30:29.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:30:38.744 INFO ProgressMeter - NC_035784.1:93341182 687.5 2547930 3705.9 01:30:46.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:30:48.782 INFO ProgressMeter - NC_035784.1:93392433 687.7 2548320 3705.5 01:30:52.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:30:58.978 INFO ProgressMeter - NC_035784.1:93460077 687.9 2548780 3705.3 01:31:09.032 INFO ProgressMeter - NC_035784.1:93487912 688.0 2548970 3704.6 01:31:15.743 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:31:20.063 INFO ProgressMeter - NC_035784.1:93546835 688.2 2549310 3704.2 01:31:24.265 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:31:24.265 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:31:25.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:31:30.737 INFO ProgressMeter - NC_035784.1:93669355 688.4 2550300 3704.6 01:31:35.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:31:35.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:31:41.126 INFO ProgressMeter - NC_035784.1:93682340 688.6 2550390 3703.8 01:31:41.144 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:31:51.151 INFO ProgressMeter - NC_035784.1:93698162 688.7 2550510 3703.1 01:32:01.333 INFO ProgressMeter - NC_035784.1:93742989 688.9 2550800 3702.6 01:32:01.564 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:32:05.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:32:07.607 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:32:09.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:32:11.592 INFO ProgressMeter - NC_035784.1:93890116 689.1 2551660 3702.9 01:32:19.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:32:21.715 INFO ProgressMeter - NC_035784.1:93932096 689.3 2551990 3702.5 01:32:22.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:32:31.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:32:31.789 INFO ProgressMeter - NC_035784.1:94122304 689.4 2552980 3703.1 01:32:42.063 INFO ProgressMeter - NC_035784.1:94136204 689.6 2553070 3702.3 01:32:48.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:32:52.509 INFO ProgressMeter - NC_035784.1:94156601 689.8 2553220 3701.5 01:32:58.962 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:33:00.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:33:01.029 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:33:03.943 INFO ProgressMeter - NC_035784.1:94169428 690.0 2553310 3700.7 01:33:12.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:33:12.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:33:14.069 INFO ProgressMeter - NC_035784.1:94263261 690.1 2553830 3700.5 01:33:24.123 INFO ProgressMeter - NC_035784.1:94319563 690.3 2554180 3700.1 01:33:27.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:33:27.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:33:27.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:33:34.212 INFO ProgressMeter - NC_035784.1:94408481 690.5 2554680 3699.9 01:33:42.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:33:44.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:33:44.287 INFO ProgressMeter - NC_035784.1:94437366 690.6 2554870 3699.3 01:33:54.659 INFO ProgressMeter - NC_035784.1:94456832 690.8 2555020 3698.6 01:34:04.787 INFO ProgressMeter - NC_035784.1:94476227 691.0 2555170 3697.9 01:34:08.871 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:34:15.166 INFO ProgressMeter - NC_035784.1:94527685 691.1 2555560 3697.6 01:34:26.069 INFO ProgressMeter - NC_035784.1:94617833 691.3 2556160 3697.5 01:34:26.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:34:27.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:34:36.224 INFO ProgressMeter - NC_035784.1:94704022 691.5 2556720 3697.4 01:34:46.184 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:34:46.184 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:34:46.242 INFO ProgressMeter - NC_035784.1:94814230 691.7 2557540 3697.7 01:34:46.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:34:46.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:34:46.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:34:46.657 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:34:56.250 INFO ProgressMeter - NC_035784.1:94926677 691.8 2558420 3698.0 01:35:02.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:35:06.310 INFO ProgressMeter - NC_035784.1:94999736 692.0 2559010 3698.0 01:35:16.387 INFO ProgressMeter - NC_035784.1:95071249 692.2 2559540 3697.9 01:35:27.103 INFO ProgressMeter - NC_035784.1:95209015 692.3 2560450 3698.2 01:35:37.108 INFO ProgressMeter - NC_035784.1:95317772 692.5 2561160 3698.4 01:35:42.239 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:35:42.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:35:47.117 INFO ProgressMeter - NC_035784.1:95403815 692.7 2561720 3698.3 01:35:49.374 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:35:53.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:35:54.022 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:35:57.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:35:57.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:35:57.374 INFO ProgressMeter - NC_035784.1:95672554 692.9 2563150 3699.4 01:36:07.402 INFO ProgressMeter - NC_035784.1:95771289 693.0 2563730 3699.4 01:36:17.473 INFO ProgressMeter - NC_035784.1:95833246 693.2 2564230 3699.2 01:36:27.541 INFO ProgressMeter - NC_035784.1:95895084 693.4 2564660 3698.9 01:36:31.682 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:36:37.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:36:37.554 INFO ProgressMeter - NC_035784.1:95959982 693.5 2565130 3698.7 01:36:48.063 INFO ProgressMeter - NC_035784.1:96007794 693.7 2565520 3698.3 01:36:58.179 INFO ProgressMeter - NC_035784.1:96096149 693.9 2566180 3698.4 01:37:01.472 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:37:08.247 INFO ProgressMeter - NC_035784.1:96231599 694.0 2567140 3698.9 01:37:18.644 INFO ProgressMeter - NC_035784.1:96307577 694.2 2567710 3698.8 01:37:28.920 INFO ProgressMeter - NC_035784.1:96365053 694.4 2568140 3698.5 01:37:39.310 INFO ProgressMeter - NC_035784.1:96379510 694.6 2568240 3697.7 01:37:50.265 INFO ProgressMeter - NC_035784.1:96403194 694.7 2568410 3697.0 01:38:00.400 INFO ProgressMeter - NC_035784.1:96428570 694.9 2568600 3696.3 01:38:11.723 INFO ProgressMeter - NC_035784.1:96502929 695.1 2569190 3696.2 01:38:22.133 INFO ProgressMeter - NC_035784.1:96515452 695.3 2569270 3695.4 01:38:22.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:38:22.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:38:22.311 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:38:22.311 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:38:22.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:38:32.236 INFO ProgressMeter - NC_035784.1:96529074 695.4 2569370 3694.6 01:38:42.323 INFO ProgressMeter - NC_035784.1:96535759 695.6 2569410 3693.8 01:38:53.216 INFO ProgressMeter - NC_035784.1:96553530 695.8 2569540 3693.0 01:39:02.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:02.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:03.237 INFO ProgressMeter - NC_035784.1:96611446 695.9 2569940 3692.7 01:39:03.492 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:08.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:08.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:08.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:11.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:13.271 INFO ProgressMeter - NC_035784.1:96767126 696.1 2570830 3693.1 01:39:15.726 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:15.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:20.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:23.323 INFO ProgressMeter - NC_035784.1:96930093 696.3 2571740 3693.5 01:39:31.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:31.631 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:32.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:32.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:33.630 INFO ProgressMeter - NC_035784.1:97008720 696.5 2572300 3693.4 01:39:43.659 INFO ProgressMeter - NC_035784.1:97050500 696.6 2572600 3693.0 01:39:46.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:49.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:39:53.997 INFO ProgressMeter - NC_035784.1:97063582 696.8 2572690 3692.2 01:40:04.469 INFO ProgressMeter - NC_035784.1:97117718 697.0 2573120 3691.9 01:40:11.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:40:14.565 INFO ProgressMeter - NC_035784.1:97210010 697.1 2573730 3691.8 01:40:18.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:40:25.126 INFO ProgressMeter - NC_035784.1:97249032 697.3 2573970 3691.3 01:40:33.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:40:35.295 INFO ProgressMeter - NC_035784.1:97304268 697.5 2574270 3690.8 01:40:39.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:40:39.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:40:43.051 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:40:43.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:40:43.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:40:43.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:40:45.618 INFO ProgressMeter - NC_035784.1:97456720 697.7 2575090 3691.1 01:40:46.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:40:49.642 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:40:57.021 INFO ProgressMeter - NC_035784.1:97498214 697.8 2575360 3690.4 01:41:07.249 INFO ProgressMeter - NC_035784.1:97544509 698.0 2575640 3689.9 01:41:07.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:09.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:17.574 INFO ProgressMeter - NC_035784.1:97577207 698.2 2575860 3689.3 01:41:18.166 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:18.166 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:18.166 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:23.271 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:25.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:25.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:27.832 INFO ProgressMeter - NC_035784.1:97654930 698.4 2576310 3689.1 01:41:30.232 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:30.232 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:30.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:38.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:38.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:38.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:38.491 INFO ProgressMeter - NC_035784.1:97695836 698.5 2576540 3688.5 01:41:46.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:47.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:49.778 INFO ProgressMeter - NC_035784.1:97755472 698.7 2576900 3688.0 01:41:54.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:56.500 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:41:58.448 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:42:00.567 INFO ProgressMeter - NC_035784.1:97828969 698.9 2577320 3687.7 01:42:10.602 INFO ProgressMeter - NC_035784.1:97857499 699.1 2577500 3687.0 01:42:20.843 INFO ProgressMeter - NC_035784.1:97911087 699.2 2577900 3686.7 01:42:31.371 INFO ProgressMeter - NC_035784.1:97998030 699.4 2578410 3686.5 01:42:33.019 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:42:36.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:42:36.790 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:42:36.790 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:42:37.493 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:42:37.712 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:42:40.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:42:41.384 INFO ProgressMeter - NC_035784.1:98120579 699.6 2579210 3686.8 01:42:51.806 INFO ProgressMeter - NC_035784.1:98170119 699.8 2579580 3686.4 01:42:52.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:42:53.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:42:55.544 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:42:58.861 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:42:58.861 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:01.857 INFO ProgressMeter - NC_035784.1:98256991 699.9 2580050 3686.2 01:43:12.021 INFO ProgressMeter - NC_035784.1:98331398 700.1 2580490 3685.9 01:43:13.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:15.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:19.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:20.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:22.118 INFO ProgressMeter - NC_035784.1:98451982 700.3 2581070 3685.9 01:43:24.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:28.846 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:30.522 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:30.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:30.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:30.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:30.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:30.857 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:32.138 INFO ProgressMeter - NC_035784.1:98618750 700.4 2581920 3686.2 01:43:37.646 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:42.158 INFO ProgressMeter - NC_035785.1:72223 700.6 2582840 3686.6 01:43:45.199 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:45.829 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:51.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:43:53.163 INFO ProgressMeter - NC_035785.1:222073 700.8 2583820 3687.1 01:43:55.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:44:03.369 INFO ProgressMeter - NC_035785.1:399036 701.0 2584980 3687.8 01:44:04.096 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:44:04.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:44:13.401 INFO ProgressMeter - NC_035785.1:519888 701.1 2585750 3688.0 01:44:16.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:44:21.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:44:21.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:44:23.942 INFO ProgressMeter - NC_035785.1:639520 701.3 2586560 3688.3 01:44:34.672 INFO ProgressMeter - NC_035785.1:729684 701.5 2587300 3688.4 01:44:45.207 INFO ProgressMeter - NC_035785.1:771301 701.6 2587640 3687.9 01:44:55.288 INFO ProgressMeter - NC_035785.1:848803 701.8 2588240 3687.9 01:45:01.389 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:01.390 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:05.344 INFO ProgressMeter - NC_035785.1:930365 702.0 2588930 3688.0 01:45:14.617 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:15.518 INFO ProgressMeter - NC_035785.1:1005905 702.2 2589520 3688.0 01:45:16.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:16.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:20.469 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:20.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:26.013 INFO ProgressMeter - NC_035785.1:1364758 702.3 2591320 3689.6 01:45:27.568 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:27.568 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:28.378 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:32.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:34.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:34.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:34.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:36.023 INFO ProgressMeter - NC_035785.1:1564011 702.5 2592660 3690.6 01:45:47.161 INFO ProgressMeter - NC_035785.1:1743599 702.7 2594040 3691.6 01:45:51.236 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:53.035 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:53.296 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:53.296 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:56.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:57.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:45:57.201 INFO ProgressMeter - NC_035785.1:1936852 702.8 2595010 3692.1 01:46:00.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:46:00.731 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:46:00.731 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:46:07.341 INFO ProgressMeter - NC_035785.1:2044493 703.0 2595730 3692.3 01:46:17.604 INFO ProgressMeter - NC_035785.1:2203949 703.2 2596710 3692.8 01:46:27.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:46:27.742 INFO ProgressMeter - NC_035785.1:2363617 703.4 2597780 3693.4 01:46:36.242 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:46:38.319 INFO ProgressMeter - NC_035785.1:2531353 703.5 2599060 3694.3 01:46:48.502 INFO ProgressMeter - NC_035785.1:2582469 703.7 2599440 3693.9 01:46:51.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:46:53.096 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:46:53.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:46:54.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:46:58.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:46:58.626 INFO ProgressMeter - NC_035785.1:2777446 703.9 2600600 3694.7 01:46:59.648 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:02.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:07.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:07.673 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:08.626 INFO ProgressMeter - NC_035785.1:3011850 704.0 2601930 3695.7 01:47:09.448 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:10.033 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:10.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:10.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:19.351 INFO ProgressMeter - NC_035785.1:3187388 704.2 2602960 3696.2 01:47:20.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:20.896 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:21.998 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:22.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:22.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:22.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:29.539 INFO ProgressMeter - NC_035785.1:3330704 704.4 2603750 3696.5 01:47:31.681 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:31.681 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:33.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:37.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:39.715 INFO ProgressMeter - NC_035785.1:3458083 704.6 2604550 3696.7 01:47:49.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:47:49.804 INFO ProgressMeter - NC_035785.1:3614949 704.7 2605360 3697.0 01:47:59.813 INFO ProgressMeter - NC_035785.1:3697554 704.9 2605880 3696.8 01:48:00.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:09.985 INFO ProgressMeter - NC_035785.1:3708757 705.1 2605960 3696.1 01:48:10.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:13.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:20.030 INFO ProgressMeter - NC_035785.1:3784151 705.2 2606490 3695.9 01:48:23.371 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:30.495 INFO ProgressMeter - NC_035785.1:3813791 705.4 2606700 3695.3 01:48:35.642 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:35.642 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:35.642 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:35.642 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:35.643 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:35.643 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:35.643 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:35.643 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:35.877 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:35.877 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:42.093 INFO ProgressMeter - NC_035785.1:3858802 705.6 2607050 3694.8 01:48:44.443 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:48:52.789 INFO ProgressMeter - NC_035785.1:3892698 705.8 2607300 3694.2 01:49:02.798 INFO ProgressMeter - NC_035785.1:3925843 705.9 2607520 3693.7 01:49:11.652 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:11.652 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:13.300 INFO ProgressMeter - NC_035785.1:4035541 706.1 2608210 3693.7 01:49:13.903 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:19.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:22.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:22.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:22.371 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:22.371 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:23.730 INFO ProgressMeter - NC_035785.1:4183004 706.3 2609090 3694.1 01:49:24.527 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:24.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:24.920 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:26.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:26.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:26.474 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:26.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:26.484 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:26.484 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:27.304 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:34.151 INFO ProgressMeter - NC_035785.1:4340822 706.5 2610060 3694.5 01:49:38.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:45.352 INFO ProgressMeter - NC_035785.1:4450487 706.7 2610760 3694.6 01:49:45.871 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:54.234 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:49:56.449 INFO ProgressMeter - NC_035785.1:4476619 706.8 2610950 3693.9 01:50:06.585 INFO ProgressMeter - NC_035785.1:4506441 707.0 2611170 3693.3 01:50:12.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:50:12.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:50:15.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:50:16.909 INFO ProgressMeter - NC_035785.1:4532198 707.2 2611350 3692.6 01:50:23.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:50:27.027 INFO ProgressMeter - NC_035785.1:4571447 707.3 2611610 3692.1 01:50:36.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:50:36.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:50:37.126 INFO ProgressMeter - NC_035785.1:4609964 707.5 2611840 3691.6 01:50:47.264 INFO ProgressMeter - NC_035785.1:4672406 707.7 2612300 3691.3 01:50:47.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:50:47.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:50:47.933 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:50:57.296 INFO ProgressMeter - NC_035785.1:4816199 707.9 2613180 3691.7 01:51:01.855 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:02.096 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:07.318 INFO ProgressMeter - NC_035785.1:4969493 708.0 2614080 3692.1 01:51:10.648 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:17.529 INFO ProgressMeter - NC_035785.1:5117538 708.2 2615050 3692.6 01:51:20.128 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:27.545 INFO ProgressMeter - NC_035785.1:5351406 708.4 2616320 3693.5 01:51:37.550 INFO ProgressMeter - NC_035785.1:5522542 708.5 2617420 3694.2 01:51:38.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:41.871 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:45.553 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:45.554 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:45.554 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:46.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:46.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:46.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:46.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:46.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:46.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:51:48.072 INFO ProgressMeter - NC_035785.1:5766736 708.7 2618870 3695.3 01:51:58.078 INFO ProgressMeter - NC_035785.1:5910185 708.9 2619790 3695.8 01:51:58.527 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:00.341 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:00.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:00.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:00.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:00.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:00.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:05.803 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:07.495 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:08.209 INFO ProgressMeter - NC_035785.1:6134873 709.0 2621140 3696.8 01:52:09.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:15.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:16.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:16.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:16.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:17.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:17.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:18.286 INFO ProgressMeter - NC_035785.1:6546247 709.2 2623110 3698.7 01:52:22.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:27.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:28.452 INFO ProgressMeter - NC_035785.1:6648267 709.4 2623750 3698.7 01:52:34.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:35.533 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:35.898 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:35.962 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:38.536 INFO ProgressMeter - NC_035785.1:6864850 709.5 2624940 3699.5 01:52:41.625 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:49.140 INFO ProgressMeter - NC_035785.1:7048648 709.7 2625990 3700.1 01:52:56.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:57.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:57.284 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:57.463 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:57.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:52:59.268 INFO ProgressMeter - NC_035785.1:7358907 709.9 2627770 3701.7 01:53:04.125 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:05.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:06.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:06.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:06.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:06.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:06.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:06.808 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:06.808 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:07.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:08.351 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:09.325 INFO ProgressMeter - NC_035785.1:7721845 710.1 2629720 3703.6 01:53:17.681 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:17.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:19.404 INFO ProgressMeter - NC_035785.1:7904292 710.2 2630650 3704.0 01:53:28.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:29.469 INFO ProgressMeter - NC_035785.1:8164815 710.4 2632050 3705.1 01:53:29.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:30.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:30.035 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:32.811 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:39.529 INFO ProgressMeter - NC_035785.1:8306041 710.6 2633010 3705.6 01:53:49.664 INFO ProgressMeter - NC_035785.1:8458370 710.7 2633750 3705.7 01:53:51.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:53:59.701 INFO ProgressMeter - NC_035785.1:8563599 710.9 2634510 3705.9 01:54:03.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:03.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:07.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:07.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:07.345 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:07.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:07.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:09.884 INFO ProgressMeter - NC_035785.1:8781261 711.1 2635640 3706.6 01:54:11.831 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:12.296 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:12.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:18.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:20.075 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:20.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:20.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:21.024 INFO ProgressMeter - NC_035785.1:8961094 711.2 2636870 3707.4 01:54:21.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:22.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:22.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:23.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:31.064 INFO ProgressMeter - NC_035785.1:9200954 711.4 2638330 3708.6 01:54:35.583 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:38.483 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:38.483 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:54:41.444 INFO ProgressMeter - NC_035785.1:9271258 711.6 2638840 3708.4 01:54:52.020 INFO ProgressMeter - NC_035785.1:9323187 711.8 2639180 3707.9 01:55:02.081 INFO ProgressMeter - NC_035785.1:9414178 711.9 2639800 3707.9 01:55:08.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:12.513 INFO ProgressMeter - NC_035785.1:9462469 712.1 2640140 3707.5 01:55:13.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:17.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:18.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:18.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:18.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:22.771 INFO ProgressMeter - NC_035785.1:9674572 712.3 2641640 3708.7 01:55:33.342 INFO ProgressMeter - NC_035785.1:9744549 712.5 2642010 3708.3 01:55:33.483 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:33.483 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:33.483 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:35.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:39.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:39.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:43.732 INFO ProgressMeter - NC_035785.1:9976126 712.6 2643380 3709.4 01:55:53.751 INFO ProgressMeter - NC_035785.1:10022325 712.8 2643730 3709.0 01:55:56.193 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:56.193 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:55:59.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:03.758 INFO ProgressMeter - NC_035785.1:10190652 713.0 2644770 3709.6 01:56:05.805 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:07.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:13.820 INFO ProgressMeter - NC_035785.1:10427533 713.1 2646330 3710.9 01:56:19.600 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:19.600 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:20.241 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:22.154 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:22.154 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:23.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:23.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:23.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:23.893 INFO ProgressMeter - NC_035785.1:10525307 713.3 2647020 3711.0 01:56:24.459 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:24.459 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:31.794 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:34.073 INFO ProgressMeter - NC_035785.1:10683909 713.5 2648000 3711.5 01:56:41.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:41.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:44.335 INFO ProgressMeter - NC_035785.1:10830248 713.6 2648970 3711.9 01:56:46.699 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:46.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:46.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:56:54.596 INFO ProgressMeter - NC_035785.1:10979165 713.8 2649840 3712.3 01:57:00.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:00.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:00.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:00.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:03.136 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:03.217 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:03.217 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:04.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:04.637 INFO ProgressMeter - NC_035785.1:11182126 714.0 2650980 3713.0 01:57:11.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:11.125 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:15.799 INFO ProgressMeter - NC_035785.1:11377218 714.2 2652080 3713.6 01:57:17.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:26.006 INFO ProgressMeter - NC_035785.1:11438966 714.3 2652500 3713.3 01:57:26.149 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:26.265 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:33.629 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:36.052 INFO ProgressMeter - NC_035785.1:11509910 714.5 2652970 3713.1 01:57:38.950 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:40.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:42.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:46.106 INFO ProgressMeter - NC_035785.1:11712468 714.7 2654240 3714.0 01:57:46.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:48.799 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:54.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:57:56.141 INFO ProgressMeter - NC_035785.1:11883058 714.8 2655190 3714.4 01:58:03.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:06.686 INFO ProgressMeter - NC_035785.1:12164912 715.0 2656750 3715.7 01:58:09.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:09.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:11.659 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:16.831 INFO ProgressMeter - NC_035785.1:12437359 715.2 2658050 3716.6 01:58:17.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:17.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:17.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:19.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:26.876 INFO ProgressMeter - NC_035785.1:12588834 715.3 2659040 3717.2 01:58:36.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:36.978 INFO ProgressMeter - NC_035785.1:12804011 715.5 2660350 3718.1 01:58:38.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:41.157 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:41.390 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:41.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:42.531 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:44.042 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:45.365 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:45.600 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:46.985 INFO ProgressMeter - NC_035785.1:13184012 715.7 2662310 3720.0 01:58:55.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:55.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:55.374 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:58:57.098 INFO ProgressMeter - NC_035785.1:13389050 715.8 2663630 3720.9 01:58:59.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:59:05.019 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:59:06.922 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:59:07.158 INFO ProgressMeter - NC_035785.1:13737805 716.0 2665490 3722.7 01:59:11.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:59:12.354 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:59:12.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:59:12.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:59:12.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:59:17.187 INFO ProgressMeter - NC_035785.1:13891212 716.2 2666420 3723.1 01:59:19.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 01:59:27.323 INFO ProgressMeter - NC_035785.1:13996858 716.4 2667190 3723.3 01:59:37.641 INFO ProgressMeter - NC_035785.1:14093673 716.5 2667900 3723.4 01:59:47.678 INFO ProgressMeter - NC_035785.1:14143015 716.7 2668210 3723.0 01:59:57.802 INFO ProgressMeter - NC_035785.1:14212443 716.9 2668660 3722.7 02:00:00.749 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:00.749 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:04.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:07.095 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:07.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:07.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:08.004 INFO ProgressMeter - NC_035785.1:14301272 717.0 2669270 3722.7 02:00:13.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:16.798 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:18.191 INFO ProgressMeter - NC_035785.1:14396000 717.2 2669910 3722.7 02:00:23.607 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:25.275 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:25.315 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:25.315 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:28.346 INFO ProgressMeter - NC_035785.1:14426394 717.4 2670130 3722.1 02:00:29.783 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:30.314 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:30.314 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:38.694 INFO ProgressMeter - NC_035785.1:14459102 717.5 2670360 3721.5 02:00:38.718 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:50.006 INFO ProgressMeter - NC_035785.1:14483359 717.7 2670510 3720.8 02:00:51.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:00:54.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:00.218 INFO ProgressMeter - NC_035785.1:14534042 717.9 2670890 3720.4 02:01:00.309 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:00.309 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:00.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:00.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:09.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:09.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:09.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:11.895 INFO ProgressMeter - NC_035785.1:14597764 718.1 2671280 3720.0 02:01:13.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:14.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:22.561 INFO ProgressMeter - NC_035785.1:14667634 718.3 2671800 3719.8 02:01:23.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:23.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:23.125 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:32.762 INFO ProgressMeter - NC_035785.1:14693712 718.4 2672000 3719.2 02:01:39.035 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:39.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:42.767 INFO ProgressMeter - NC_035785.1:14745211 718.6 2672310 3718.7 02:01:44.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:44.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:44.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:44.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:44.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:01:52.946 INFO ProgressMeter - NC_035785.1:14786923 718.8 2672590 3718.2 02:02:03.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:02:03.164 INFO ProgressMeter - NC_035785.1:14835556 718.9 2672930 3717.8 02:02:13.636 INFO ProgressMeter - NC_035785.1:14897366 719.1 2673320 3717.5 02:02:16.443 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:02:19.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:02:22.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:02:24.903 INFO ProgressMeter - NC_035785.1:14981908 719.3 2673840 3717.2 02:02:26.190 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:02:35.105 INFO ProgressMeter - NC_035785.1:15009808 719.5 2674040 3716.6 02:02:35.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:02:45.116 INFO ProgressMeter - NC_035785.1:15097011 719.6 2674610 3716.6 02:02:48.664 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:02:48.664 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:02:48.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:02:48.978 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:02:54.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:02:55.212 INFO ProgressMeter - NC_035785.1:15148691 719.8 2674980 3716.2 02:03:05.216 INFO ProgressMeter - NC_035785.1:15184044 720.0 2675220 3715.7 02:03:05.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:03:05.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:03:14.731 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:03:14.731 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:03:15.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:03:15.658 INFO ProgressMeter - NC_035785.1:15332789 720.2 2676330 3716.3 02:03:21.341 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:03:26.824 INFO ProgressMeter - NC_035785.1:15401417 720.3 2676770 3716.0 02:03:28.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:03:34.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:03:34.931 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:03:35.774 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:03:35.775 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:03:37.444 INFO ProgressMeter - NC_035785.1:15512414 720.5 2677530 3716.1 02:03:49.462 INFO ProgressMeter - NC_035785.1:15545324 720.7 2677760 3715.4 02:03:50.785 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:03:53.791 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:01.144 INFO ProgressMeter - NC_035785.1:15584875 720.9 2678030 3714.8 02:04:11.211 INFO ProgressMeter - NC_035785.1:15617158 721.1 2678270 3714.2 02:04:17.051 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:17.051 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:17.051 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:21.465 INFO ProgressMeter - NC_035785.1:15689683 721.3 2678760 3714.0 02:04:24.783 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:31.481 INFO ProgressMeter - NC_035785.1:15804794 721.4 2679630 3714.4 02:04:31.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:31.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:41.538 INFO ProgressMeter - NC_035785.1:15852364 721.6 2679890 3713.9 02:04:45.861 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:50.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:50.480 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:51.703 INFO ProgressMeter - NC_035785.1:15890427 721.8 2680150 3713.4 02:04:53.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:53.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:53.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:53.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:53.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:53.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:53.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:53.746 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:53.746 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:53.888 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:53.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:58.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:58.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:04:58.476 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:02.310 INFO ProgressMeter - NC_035785.1:15955069 721.9 2680600 3713.1 02:05:04.773 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:06.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:12.494 INFO ProgressMeter - NC_035785.1:15999409 722.1 2680920 3712.7 02:05:13.089 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:13.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:14.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:15.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:16.190 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:19.863 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:19.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:19.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:21.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:21.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:21.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:21.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:23.036 INFO ProgressMeter - NC_035785.1:16122010 722.3 2681690 3712.8 02:05:31.215 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:31.264 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:33.282 INFO ProgressMeter - NC_035785.1:16213579 722.5 2682260 3712.7 02:05:35.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:38.838 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:38.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:38.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:38.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:38.877 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:43.342 INFO ProgressMeter - NC_035785.1:16338723 722.6 2682970 3712.8 02:05:43.514 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:44.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:48.509 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:05:53.524 INFO ProgressMeter - NC_035785.1:16511066 722.8 2684120 3713.6 02:06:00.669 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:03.907 INFO ProgressMeter - NC_035785.1:16589497 723.0 2684640 3713.4 02:06:07.358 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:08.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:08.108 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:13.227 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:13.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:13.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:13.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:13.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:13.975 INFO ProgressMeter - NC_035785.1:16716991 723.1 2685440 3713.6 02:06:22.743 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:24.797 INFO ProgressMeter - NC_035785.1:16944975 723.3 2686790 3714.6 02:06:24.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:24.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:34.817 INFO ProgressMeter - NC_035785.1:17167763 723.5 2688070 3715.5 02:06:41.389 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:44.925 INFO ProgressMeter - NC_035785.1:17210115 723.6 2688340 3715.0 02:06:47.861 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:47.861 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:47.971 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:47.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:47.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:52.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:52.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:06:55.379 INFO ProgressMeter - NC_035785.1:17354677 723.8 2689190 3715.3 02:06:58.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:00.137 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:00.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:00.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:00.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:00.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:00.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:00.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:00.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:01.828 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:03.185 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:03.185 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:04.021 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:05.400 INFO ProgressMeter - NC_035785.1:17499333 724.0 2690180 3715.8 02:07:15.518 INFO ProgressMeter - NC_035785.1:17630615 724.2 2691070 3716.2 02:07:17.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:18.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:18.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:21.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:21.500 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:24.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:24.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:25.909 INFO ProgressMeter - NC_035785.1:17890380 724.3 2692660 3717.5 02:07:36.006 INFO ProgressMeter - NC_035785.1:18068396 724.5 2693720 3718.1 02:07:42.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:46.512 INFO ProgressMeter - NC_035785.1:18130250 724.7 2694140 3717.7 02:07:52.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:52.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:55.729 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:55.729 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:55.729 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:07:56.543 INFO ProgressMeter - NC_035785.1:18206765 724.8 2694640 3717.6 02:07:58.314 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:01.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:01.544 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:07.090 INFO ProgressMeter - NC_035785.1:18469291 725.0 2696130 3718.7 02:08:07.285 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:07.285 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:10.288 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:10.668 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:11.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:11.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:11.819 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:11.819 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:11.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:12.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:12.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:12.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:17.140 INFO ProgressMeter - NC_035785.1:18750668 725.2 2697720 3720.1 02:08:19.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:19.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:21.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:22.025 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:22.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:22.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:23.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:23.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:23.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:23.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:23.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:24.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:25.678 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:27.322 INFO ProgressMeter - NC_035785.1:18924245 725.4 2698920 3720.8 02:08:32.461 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:32.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:32.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:32.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:32.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:34.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:34.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:34.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:38.106 INFO ProgressMeter - NC_035785.1:19055169 725.5 2699790 3721.1 02:08:38.146 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:39.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:39.914 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:43.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:48.114 INFO ProgressMeter - NC_035785.1:19324611 725.7 2701280 3722.3 02:08:48.294 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:48.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:49.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:53.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:53.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:58.829 INFO ProgressMeter - NC_035785.1:19588052 725.9 2702760 3723.4 02:08:59.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:08:59.712 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:00.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:00.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:00.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:02.859 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:03.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:08.844 INFO ProgressMeter - NC_035785.1:19764965 726.0 2703820 3724.0 02:09:09.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:09.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:09.221 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:09.221 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:09.746 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:10.075 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:10.896 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:11.157 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:11.775 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:13.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:18.971 INFO ProgressMeter - NC_035785.1:20023428 726.2 2705470 3725.5 02:09:24.944 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:25.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:25.303 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:29.254 INFO ProgressMeter - NC_035785.1:20255182 726.4 2706630 3726.2 02:09:29.788 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:34.783 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:39.272 INFO ProgressMeter - NC_035785.1:20426864 726.6 2707640 3726.7 02:09:40.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:40.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:41.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:41.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:41.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:46.213 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:46.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:46.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:46.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:47.530 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:49.292 INFO ProgressMeter - NC_035785.1:20648580 726.7 2709030 3727.8 02:09:54.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:54.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:54.846 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:55.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:55.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:57.440 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:57.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:09:59.329 INFO ProgressMeter - NC_035785.1:20971164 726.9 2710920 3729.5 02:10:02.001 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:04.161 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:04.162 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:08.674 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:09.338 INFO ProgressMeter - NC_035785.1:21172209 727.1 2712240 3730.5 02:10:14.880 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:19.353 INFO ProgressMeter - NC_035785.1:21257212 727.2 2712790 3730.4 02:10:20.410 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:25.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:25.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:25.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:26.799 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:28.162 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:28.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:29.388 INFO ProgressMeter - NC_035785.1:21388251 727.4 2713560 3730.6 02:10:40.247 INFO ProgressMeter - NC_035785.1:21450717 727.6 2713960 3730.2 02:10:48.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:48.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:48.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:48.933 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:50.288 INFO ProgressMeter - NC_035785.1:21543660 727.7 2714510 3730.1 02:10:57.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:57.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:10:57.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:00.588 INFO ProgressMeter - NC_035785.1:21686995 727.9 2715340 3730.3 02:11:00.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:00.631 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:00.999 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:03.487 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:03.532 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:05.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:07.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:07.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:09.267 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:10.591 INFO ProgressMeter - NC_035785.1:21951392 728.1 2716840 3731.6 02:11:20.974 INFO ProgressMeter - NC_035785.1:21982008 728.2 2717030 3730.9 02:11:23.749 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:30.986 INFO ProgressMeter - NC_035785.1:22258182 728.4 2718680 3732.3 02:11:36.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:39.316 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:39.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:40.540 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:40.540 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:40.971 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:40.993 INFO ProgressMeter - NC_035785.1:22538594 728.6 2720330 3733.7 02:11:42.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:11:51.007 INFO ProgressMeter - NC_035785.1:22698091 728.7 2721150 3734.0 02:11:55.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:01.294 INFO ProgressMeter - NC_035785.1:22945803 728.9 2722410 3734.9 02:12:10.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:11.822 INFO ProgressMeter - NC_035785.1:23093583 729.1 2723210 3735.1 02:12:13.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:14.829 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:15.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:15.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:15.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:15.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:15.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:15.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:15.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:21.992 INFO ProgressMeter - NC_035785.1:23163512 729.3 2723670 3734.8 02:12:23.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:26.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:27.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:32.075 INFO ProgressMeter - NC_035785.1:23308464 729.4 2724580 3735.2 02:12:42.248 INFO ProgressMeter - NC_035785.1:23455934 729.6 2725520 3735.6 02:12:45.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:48.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:48.375 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:50.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:51.494 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:52.486 INFO ProgressMeter - NC_035785.1:23802777 729.8 2727560 3737.6 02:12:52.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:53.615 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:57.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:58.339 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:12:59.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:00.354 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:01.331 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:02.506 INFO ProgressMeter - NC_035785.1:24199573 729.9 2729750 3739.7 02:13:11.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:12.518 INFO ProgressMeter - NC_035785.1:24445017 730.1 2731050 3740.6 02:13:13.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:14.206 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:14.256 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:14.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:14.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:14.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:14.428 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:14.428 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:15.654 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:15.794 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:16.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:16.858 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:18.151 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:22.589 INFO ProgressMeter - NC_035785.1:24840744 730.3 2732990 3742.4 02:13:27.450 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:27.450 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:30.161 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:32.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:32.686 INFO ProgressMeter - NC_035785.1:24979153 730.4 2733890 3742.8 02:13:34.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:34.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:34.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:37.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:37.965 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:37.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:43.880 INFO ProgressMeter - NC_035785.1:25024827 730.6 2734210 3742.3 02:13:50.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:50.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:50.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:50.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:50.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:13:54.040 INFO ProgressMeter - NC_035785.1:25081381 730.8 2734560 3741.9 02:14:03.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:03.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:03.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:03.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:04.199 INFO ProgressMeter - NC_035785.1:25164919 731.0 2735100 3741.8 02:14:14.203 INFO ProgressMeter - NC_035785.1:25418667 731.1 2736440 3742.7 02:14:16.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:16.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:16.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:16.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:16.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:16.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:16.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:16.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:18.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:23.697 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:24.265 INFO ProgressMeter - NC_035785.1:25719055 731.3 2738110 3744.2 02:14:26.090 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:26.091 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:26.613 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:27.121 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:27.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:27.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:30.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:34.404 INFO ProgressMeter - NC_035785.1:26080021 731.5 2739800 3745.6 02:14:40.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:42.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:44.421 INFO ProgressMeter - NC_035785.1:26215364 731.6 2740590 3745.8 02:14:45.417 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:45.417 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:50.509 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:55.252 INFO ProgressMeter - NC_035785.1:26352121 731.8 2741420 3746.0 02:14:56.274 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:58.916 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:58.916 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:14:58.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:00.275 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:00.294 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:00.496 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:05.412 INFO ProgressMeter - NC_035785.1:26699882 732.0 2743250 3747.7 02:15:06.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:06.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:06.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:06.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:12.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:14.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:14.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:15.438 INFO ProgressMeter - NC_035785.1:27009920 732.2 2744640 3748.7 02:15:16.403 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:17.460 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:17.460 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:17.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:26.257 INFO ProgressMeter - NC_035785.1:27391428 732.3 2746710 3750.6 02:15:35.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:36.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:36.269 INFO ProgressMeter - NC_035785.1:27668056 732.5 2748170 3751.8 02:15:36.407 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:36.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:36.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:37.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:37.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:37.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:46.408 INFO ProgressMeter - NC_035785.1:28080888 732.7 2750230 3753.7 02:15:47.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:47.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:47.963 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:47.963 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:48.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:48.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:51.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:51.419 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:51.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:15:56.543 INFO ProgressMeter - NC_035785.1:28458321 732.8 2752190 3755.5 02:16:03.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:03.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:06.658 INFO ProgressMeter - NC_035785.1:28676564 733.0 2753300 3756.2 02:16:06.829 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:12.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:16.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:16.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:16.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:16.717 INFO ProgressMeter - NC_035785.1:28892722 733.2 2754560 3757.0 02:16:21.297 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:23.041 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:23.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:26.728 INFO ProgressMeter - NC_035785.1:29268241 733.3 2756530 3758.9 02:16:29.041 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:36.750 INFO ProgressMeter - NC_035785.1:29562078 733.5 2758640 3760.9 02:16:39.178 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:43.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:45.905 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:47.391 INFO ProgressMeter - NC_035785.1:29769905 733.7 2760020 3761.9 02:16:49.817 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:51.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:51.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:52.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:54.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:16:57.960 INFO ProgressMeter - NC_035785.1:30022992 733.9 2761340 3762.8 02:17:04.375 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:17:06.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:17:07.131 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:17:07.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:17:07.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:17:07.987 INFO ProgressMeter - NC_035785.1:30099297 734.0 2761820 3762.6 02:17:16.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:17:18.328 INFO ProgressMeter - NC_035785.1:30176129 734.2 2762380 3762.4 02:17:28.414 INFO ProgressMeter - NC_035785.1:30441492 734.4 2763670 3763.3 02:17:28.509 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:17:38.512 INFO ProgressMeter - NC_035785.1:30519691 734.5 2764320 3763.3 02:17:47.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:17:49.199 INFO ProgressMeter - NC_035785.1:30563239 734.7 2764690 3762.9 02:17:57.252 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:17:57.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:17:59.387 INFO ProgressMeter - NC_035785.1:30590811 734.9 2764910 3762.4 02:18:09.640 INFO ProgressMeter - NC_035785.1:30622208 735.1 2765180 3761.9 02:18:19.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:18:19.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:18:19.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:18:19.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:18:19.651 INFO ProgressMeter - NC_035785.1:30703854 735.2 2765810 3761.9 02:18:20.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:18:20.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:18:20.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:18:20.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:18:20.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:18:22.308 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:18:29.695 INFO ProgressMeter - NC_035785.1:30814813 735.4 2766700 3762.2 02:18:31.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:18:39.739 INFO ProgressMeter - NC_035785.1:30901872 735.6 2767420 3762.3 02:18:50.539 INFO ProgressMeter - NC_035785.1:30947196 735.7 2767690 3761.8 02:19:00.722 INFO ProgressMeter - NC_035785.1:31002429 735.9 2768090 3761.5 02:19:01.548 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:19:10.787 INFO ProgressMeter - NC_035785.1:31067252 736.1 2768540 3761.2 02:19:20.824 INFO ProgressMeter - NC_035785.1:31127071 736.2 2769020 3761.0 02:19:21.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:19:31.114 INFO ProgressMeter - NC_035785.1:31241390 736.4 2769910 3761.3 02:19:41.150 INFO ProgressMeter - NC_035785.1:31329127 736.6 2770630 3761.5 02:19:46.103 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:19:51.247 INFO ProgressMeter - NC_035785.1:31396556 736.7 2771170 3761.3 02:20:01.461 INFO ProgressMeter - NC_035785.1:31456620 736.9 2771630 3761.1 02:20:12.031 INFO ProgressMeter - NC_035785.1:31489941 737.1 2771900 3760.6 02:20:22.527 INFO ProgressMeter - NC_035785.1:31534363 737.3 2772220 3760.1 02:20:32.859 INFO ProgressMeter - NC_035785.1:31605891 737.4 2772840 3760.1 02:20:43.315 INFO ProgressMeter - NC_035785.1:31661837 737.6 2773250 3759.7 02:20:44.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:20:47.553 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:20:54.642 INFO ProgressMeter - NC_035785.1:31737161 737.8 2773860 3759.6 02:21:04.684 INFO ProgressMeter - NC_035785.1:31802159 738.0 2774370 3759.4 02:21:13.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:21:13.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:21:14.909 INFO ProgressMeter - NC_035785.1:31862018 738.1 2774810 3759.2 02:21:24.953 INFO ProgressMeter - NC_035785.1:31922526 738.3 2775280 3759.0 02:21:33.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:21:35.169 INFO ProgressMeter - NC_035785.1:31965532 738.5 2775590 3758.5 02:21:45.186 INFO ProgressMeter - NC_035785.1:32008893 738.6 2775940 3758.1 02:21:55.840 INFO ProgressMeter - NC_035785.1:32092930 738.8 2776550 3758.1 02:22:06.145 INFO ProgressMeter - NC_035785.1:32139997 739.0 2776920 3757.7 02:22:16.840 INFO ProgressMeter - NC_035785.1:32196423 739.2 2777360 3757.4 02:22:27.128 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:22:27.733 INFO ProgressMeter - NC_035785.1:32256852 739.4 2777870 3757.1 02:22:37.818 INFO ProgressMeter - NC_035785.1:32310425 739.5 2778320 3756.9 02:22:48.072 INFO ProgressMeter - NC_035785.1:32365825 739.7 2778750 3756.6 02:22:58.558 INFO ProgressMeter - NC_035785.1:32432729 739.9 2779260 3756.4 02:23:08.681 INFO ProgressMeter - NC_035785.1:32488503 740.0 2779740 3756.2 02:23:11.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:23:18.746 INFO ProgressMeter - NC_035785.1:32537077 740.2 2780130 3755.9 02:23:28.759 INFO ProgressMeter - NC_035785.1:32643779 740.4 2781010 3756.2 02:23:36.877 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:23:39.297 INFO ProgressMeter - NC_035785.1:32801077 740.6 2782130 3756.8 02:23:49.538 INFO ProgressMeter - NC_035785.1:32896420 740.7 2782770 3756.8 02:23:52.935 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:23:59.779 INFO ProgressMeter - NC_035785.1:32930792 740.9 2783030 3756.3 02:24:09.922 INFO ProgressMeter - NC_035785.1:32976753 741.1 2783390 3756.0 02:24:19.951 INFO ProgressMeter - NC_035785.1:33013231 741.2 2783660 3755.5 02:24:30.014 INFO ProgressMeter - NC_035785.1:33056886 741.4 2783990 3755.1 02:24:32.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:24:40.189 INFO ProgressMeter - NC_035785.1:33098840 741.6 2784340 3754.7 02:24:50.466 INFO ProgressMeter - NC_035785.1:33157319 741.7 2784790 3754.4 02:25:01.400 INFO ProgressMeter - NC_035785.1:33211133 741.9 2785220 3754.1 02:25:11.723 INFO ProgressMeter - NC_035785.1:33227441 742.1 2785340 3753.4 02:25:18.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:25:18.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:25:18.954 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:25:19.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:25:22.062 INFO ProgressMeter - NC_035785.1:33275509 742.3 2785640 3752.9 02:25:23.965 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:25:23.965 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:25:32.754 INFO ProgressMeter - NC_035785.1:33329935 742.4 2786010 3752.5 02:25:33.626 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:25:38.537 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:25:43.167 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:25:43.329 INFO ProgressMeter - NC_035785.1:33384296 742.6 2786420 3752.2 02:25:53.483 INFO ProgressMeter - NC_035785.1:33434510 742.8 2786820 3751.8 02:26:03.628 INFO ProgressMeter - NC_035785.1:33522428 743.0 2787480 3751.9 02:26:10.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:26:13.902 INFO ProgressMeter - NC_035785.1:33566438 743.1 2787800 3751.4 02:26:23.910 INFO ProgressMeter - NC_035785.1:33615477 743.3 2788180 3751.1 02:26:33.925 INFO ProgressMeter - NC_035785.1:33664672 743.5 2788580 3750.8 02:26:39.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:26:44.030 INFO ProgressMeter - NC_035785.1:33878837 743.6 2789650 3751.4 02:26:54.215 INFO ProgressMeter - NC_035785.1:33912569 743.8 2789930 3750.9 02:26:56.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:04.292 INFO ProgressMeter - NC_035785.1:33975872 744.0 2790410 3750.7 02:27:10.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:14.433 INFO ProgressMeter - NC_035785.1:34036462 744.1 2790880 3750.5 02:27:24.488 INFO ProgressMeter - NC_035785.1:34107471 744.3 2791450 3750.4 02:27:27.940 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:34.637 INFO ProgressMeter - NC_035785.1:34159903 744.5 2791850 3750.1 02:27:36.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:36.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:39.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:39.385 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:39.385 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:39.385 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:39.385 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:39.385 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:39.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:39.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:39.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:40.277 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:44.289 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:44.645 INFO ProgressMeter - NC_035785.1:34369796 744.6 2793010 3750.8 02:27:52.313 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:52.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:52.758 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:54.585 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:27:54.748 INFO ProgressMeter - NC_035785.1:34565279 744.8 2794320 3751.7 02:27:58.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:28:01.358 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:28:01.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:28:04.835 INFO ProgressMeter - NC_035785.1:34841828 745.0 2795920 3753.0 02:28:05.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:28:14.949 INFO ProgressMeter - NC_035785.1:34991086 745.1 2796900 3753.5 02:28:17.667 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:28:17.668 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:28:17.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:28:25.137 INFO ProgressMeter - NC_035785.1:35061077 745.3 2797470 3753.4 02:28:25.325 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:28:27.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:28:34.527 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:28:34.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:28:35.219 INFO ProgressMeter - NC_035785.1:35112148 745.5 2797880 3753.1 02:28:45.247 INFO ProgressMeter - NC_035785.1:35171564 745.6 2798370 3752.9 02:28:51.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:28:55.756 INFO ProgressMeter - NC_035785.1:35217099 745.8 2798670 3752.4 02:29:06.335 INFO ProgressMeter - NC_035785.1:35274687 746.0 2799080 3752.1 02:29:06.516 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:29:10.541 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:29:14.775 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:29:14.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:29:17.761 INFO ProgressMeter - NC_035785.1:35348398 746.2 2799620 3751.9 02:29:20.788 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:29:20.788 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:29:28.236 INFO ProgressMeter - NC_035785.1:35432522 746.4 2800200 3751.8 02:29:39.310 INFO ProgressMeter - NC_035785.1:35474815 746.6 2800520 3751.3 02:29:50.704 INFO ProgressMeter - NC_035785.1:35499950 746.7 2800700 3750.6 02:30:00.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:30:00.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:30:00.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:30:00.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:30:01.849 INFO ProgressMeter - NC_035785.1:35513197 746.9 2800790 3749.8 02:30:01.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:30:12.135 INFO ProgressMeter - NC_035785.1:35555257 747.1 2801090 3749.3 02:30:13.313 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:30:22.248 INFO ProgressMeter - NC_035785.1:35620453 747.3 2801560 3749.1 02:30:32.322 INFO ProgressMeter - NC_035785.1:35670626 747.4 2801910 3748.7 02:30:33.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:30:42.385 INFO ProgressMeter - NC_035785.1:35712003 747.6 2802200 3748.3 02:30:52.668 INFO ProgressMeter - NC_035785.1:35784083 747.8 2802770 3748.2 02:30:57.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:30:57.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:30:57.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:30:57.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:31:02.899 INFO ProgressMeter - NC_035785.1:35878271 747.9 2803490 3748.3 02:31:13.153 INFO ProgressMeter - NC_035785.1:35931214 748.1 2803900 3748.0 02:31:23.880 INFO ProgressMeter - NC_035785.1:35970152 748.3 2804190 3747.4 02:31:32.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:31:32.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:31:33.953 INFO ProgressMeter - NC_035785.1:36009931 748.5 2804460 3747.0 02:31:44.075 INFO ProgressMeter - NC_035785.1:36045673 748.6 2804740 3746.5 02:31:46.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:31:54.203 INFO ProgressMeter - NC_035785.1:36156464 748.8 2805600 3746.8 02:31:57.052 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:32:02.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:32:04.482 INFO ProgressMeter - NC_035785.1:36211265 749.0 2806020 3746.5 02:32:14.837 INFO ProgressMeter - NC_035785.1:36243343 749.1 2806270 3746.0 02:32:25.201 INFO ProgressMeter - NC_035785.1:36300745 749.3 2806670 3745.6 02:32:36.290 INFO ProgressMeter - NC_035785.1:36336650 749.5 2806940 3745.1 02:32:36.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:32:41.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:32:46.651 INFO ProgressMeter - NC_035785.1:36405546 749.7 2807390 3744.8 02:32:56.696 INFO ProgressMeter - NC_035785.1:36446568 749.8 2807710 3744.4 02:33:07.046 INFO ProgressMeter - NC_035785.1:36503063 750.0 2808150 3744.1 02:33:12.220 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:33:17.056 INFO ProgressMeter - NC_035785.1:36585624 750.2 2808790 3744.2 02:33:19.699 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:33:19.699 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:33:27.170 INFO ProgressMeter - NC_035785.1:36639868 750.3 2809250 3743.9 02:33:37.627 INFO ProgressMeter - NC_035785.1:36695749 750.5 2809650 3743.6 02:33:42.678 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:33:42.679 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:33:46.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:33:46.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:33:47.639 INFO ProgressMeter - NC_035785.1:36793452 750.7 2810400 3743.8 02:33:58.138 INFO ProgressMeter - NC_035785.1:36831620 750.9 2810700 3743.3 02:34:01.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:34:01.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:34:08.178 INFO ProgressMeter - NC_035785.1:36883862 751.0 2811150 3743.1 02:34:11.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:34:11.331 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:34:14.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:34:16.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:34:18.264 INFO ProgressMeter - NC_035785.1:36970347 751.2 2811830 3743.1 02:34:27.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:34:28.579 INFO ProgressMeter - NC_035785.1:37047894 751.4 2812410 3743.0 02:34:38.688 INFO ProgressMeter - NC_035785.1:37091376 751.5 2812750 3742.6 02:34:48.908 INFO ProgressMeter - NC_035785.1:37134621 751.7 2813060 3742.2 02:34:59.606 INFO ProgressMeter - NC_035785.1:37162632 751.9 2813270 3741.6 02:35:10.079 INFO ProgressMeter - NC_035785.1:37205152 752.1 2813560 3741.1 02:35:20.554 INFO ProgressMeter - NC_035785.1:37251162 752.2 2813930 3740.7 02:35:31.161 INFO ProgressMeter - NC_035785.1:37306960 752.4 2814330 3740.4 02:35:40.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:35:41.680 INFO ProgressMeter - NC_035785.1:37351513 752.6 2814690 3740.0 02:35:51.678 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:35:51.678 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:35:51.983 INFO ProgressMeter - NC_035785.1:37388237 752.8 2814970 3739.5 02:35:56.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:36:02.068 INFO ProgressMeter - NC_035785.1:37439558 752.9 2815380 3739.2 02:36:10.442 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:36:12.238 INFO ProgressMeter - NC_035785.1:37540166 753.1 2816130 3739.4 02:36:14.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:36:22.568 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:36:22.568 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:36:22.568 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:36:22.576 INFO ProgressMeter - NC_035785.1:37566559 753.3 2816320 3738.8 02:36:27.931 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:36:27.931 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:36:31.531 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:36:31.531 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:36:32.797 INFO ProgressMeter - NC_035785.1:37628091 753.4 2816740 3738.5 02:36:43.637 INFO ProgressMeter - NC_035785.1:37665174 753.6 2817050 3738.0 02:36:53.748 INFO ProgressMeter - NC_035785.1:37728843 753.8 2817560 3737.9 02:37:03.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:03.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:03.918 INFO ProgressMeter - NC_035785.1:37808090 754.0 2818130 3737.8 02:37:10.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:10.443 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:12.258 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:14.273 INFO ProgressMeter - NC_035785.1:37906924 754.1 2818830 3737.8 02:37:20.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:21.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:22.401 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:22.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:24.518 INFO ProgressMeter - NC_035785.1:38015499 754.3 2819560 3738.0 02:37:26.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:35.116 INFO ProgressMeter - NC_035785.1:38115871 754.5 2820030 3737.7 02:37:39.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:39.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:41.927 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:41.927 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:45.119 INFO ProgressMeter - NC_035785.1:38282959 754.6 2820990 3738.2 02:37:50.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:52.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:55.124 INFO ProgressMeter - NC_035785.1:38579635 754.8 2822270 3739.0 02:37:58.877 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:58.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:37:58.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:05.136 INFO ProgressMeter - NC_035785.1:38955111 755.0 2824130 3740.7 02:38:07.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:10.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:10.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:12.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:16.217 INFO ProgressMeter - NC_035785.1:39178988 755.2 2825400 3741.4 02:38:23.888 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:23.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:23.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:25.029 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:26.305 INFO ProgressMeter - NC_035785.1:39203880 755.3 2825580 3740.8 02:38:28.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:29.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:29.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:29.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:29.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:29.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:29.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:29.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:29.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:29.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:29.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:31.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:31.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:36.423 INFO ProgressMeter - NC_035785.1:39498887 755.5 2827060 3742.0 02:38:40.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:41.579 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:42.227 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:42.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:43.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:44.654 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:44.921 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:45.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:45.995 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:45.995 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:45.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:46.858 INFO ProgressMeter - NC_035785.1:39812901 755.7 2828690 3743.3 02:38:46.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:50.401 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:55.500 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:55.500 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:38:56.873 INFO ProgressMeter - NC_035785.1:39992787 755.8 2829730 3743.8 02:39:01.574 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:39:06.997 INFO ProgressMeter - NC_035785.1:40175590 756.0 2830860 3744.5 02:39:15.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:39:17.199 INFO ProgressMeter - NC_035785.1:40319928 756.2 2831690 3744.7 02:39:19.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:39:21.892 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:39:24.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:39:25.157 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:39:25.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:39:26.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:39:28.062 INFO ProgressMeter - NC_035785.1:40631436 756.4 2833520 3746.2 02:39:28.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:39:34.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:39:38.613 INFO ProgressMeter - NC_035785.1:40713703 756.5 2834090 3746.1 02:39:48.614 INFO ProgressMeter - NC_035785.1:40794609 756.7 2834710 3746.1 02:39:58.685 INFO ProgressMeter - NC_035785.1:40865343 756.9 2835220 3746.0 02:40:04.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:40:04.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:40:09.353 INFO ProgressMeter - NC_035785.1:40981663 757.1 2835940 3746.0 02:40:11.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:40:19.389 INFO ProgressMeter - NC_035785.1:41270730 757.2 2837470 3747.2 02:40:29.635 INFO ProgressMeter - NC_035785.1:41313908 757.4 2837770 3746.8 02:40:39.992 INFO ProgressMeter - NC_035785.1:41342064 757.6 2837980 3746.2 02:40:50.039 INFO ProgressMeter - NC_035785.1:41396194 757.7 2838420 3746.0 02:41:00.753 INFO ProgressMeter - NC_035785.1:41442364 757.9 2838790 3745.6 02:41:07.637 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:41:08.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:41:10.829 INFO ProgressMeter - NC_035785.1:41490174 758.1 2839160 3745.2 02:41:19.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:41:20.863 INFO ProgressMeter - NC_035785.1:41528674 758.2 2839450 3744.8 02:41:29.840 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:41:30.885 INFO ProgressMeter - NC_035785.1:41612550 758.4 2840010 3744.7 02:41:33.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:41:34.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:41:34.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:41:34.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:41:35.548 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:41:37.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:41:39.515 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:41:40.885 INFO ProgressMeter - NC_035785.1:41753033 758.6 2840890 3745.0 02:41:51.020 INFO ProgressMeter - NC_035785.1:41836235 758.7 2841500 3745.0 02:42:01.087 INFO ProgressMeter - NC_035785.1:41892408 758.9 2841880 3744.7 02:42:04.607 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:42:04.607 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:42:05.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:42:06.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:42:11.326 INFO ProgressMeter - NC_035785.1:42098959 759.1 2843320 3745.7 02:42:12.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:42:19.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:42:19.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:42:19.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:42:21.569 INFO ProgressMeter - NC_035785.1:42254158 759.3 2844430 3746.3 02:42:28.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:42:31.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:42:32.863 INFO ProgressMeter - NC_035785.1:42342296 759.4 2845010 3746.2 02:42:34.783 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:42:34.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:42:42.883 INFO ProgressMeter - NC_035785.1:42420268 759.6 2845540 3746.1 02:42:52.936 INFO ProgressMeter - NC_035785.1:42477239 759.8 2845990 3745.8 02:43:03.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:43:03.426 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:43:03.444 INFO ProgressMeter - NC_035785.1:42531318 760.0 2846380 3745.5 02:43:05.200 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:43:13.578 INFO ProgressMeter - NC_035785.1:42596445 760.1 2846900 3745.3 02:43:18.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:43:18.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:43:23.941 INFO ProgressMeter - NC_035785.1:42632201 760.3 2847160 3744.8 02:43:34.211 INFO ProgressMeter - NC_035785.1:42669350 760.5 2847450 3744.4 02:43:44.220 INFO ProgressMeter - NC_035785.1:42750321 760.6 2848100 3744.4 02:43:54.275 INFO ProgressMeter - NC_035785.1:42781100 760.8 2848340 3743.9 02:44:04.368 INFO ProgressMeter - NC_035785.1:42837459 761.0 2848750 3743.6 02:44:14.392 INFO ProgressMeter - NC_035785.1:42888865 761.1 2849170 3743.3 02:44:21.086 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:44:24.655 INFO ProgressMeter - NC_035785.1:42969010 761.3 2849830 3743.3 02:44:24.905 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:44:35.897 INFO ProgressMeter - NC_035785.1:43017627 761.5 2850170 3742.9 02:44:45.918 INFO ProgressMeter - NC_035785.1:43082284 761.7 2850610 3742.6 02:44:56.082 INFO ProgressMeter - NC_035785.1:43149243 761.8 2851110 3742.4 02:45:06.146 INFO ProgressMeter - NC_035785.1:43234742 762.0 2851800 3742.5 02:45:08.365 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:45:16.246 INFO ProgressMeter - NC_035785.1:43310095 762.2 2852290 3742.3 02:45:16.707 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:45:22.729 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:45:27.507 INFO ProgressMeter - NC_035785.1:43386723 762.4 2852810 3742.1 02:45:37.572 INFO ProgressMeter - NC_035785.1:43433534 762.5 2853210 3741.8 02:45:45.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:45:45.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:45:45.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:45:47.678 INFO ProgressMeter - NC_035785.1:43482387 762.7 2853600 3741.5 02:45:49.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:45:51.128 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:45:51.128 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:45:51.129 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:45:57.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:45:57.725 INFO ProgressMeter - NC_035785.1:43573809 762.9 2854170 3741.4 02:46:08.355 INFO ProgressMeter - NC_035785.1:43627511 763.0 2854560 3741.1 02:46:18.661 INFO ProgressMeter - NC_035785.1:43693365 763.2 2855090 3740.9 02:46:23.196 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:46:28.750 INFO ProgressMeter - NC_035785.1:43753407 763.4 2855560 3740.7 02:46:34.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:46:38.857 INFO ProgressMeter - NC_035785.1:43847744 763.5 2856280 3740.8 02:46:49.083 INFO ProgressMeter - NC_035785.1:43915405 763.7 2856850 3740.7 02:46:52.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:46:52.770 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:46:56.729 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:46:59.266 INFO ProgressMeter - NC_035785.1:43965982 763.9 2857220 3740.4 02:47:09.431 INFO ProgressMeter - NC_035785.1:44032849 764.1 2857760 3740.3 02:47:17.618 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:18.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:19.286 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:19.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:19.906 INFO ProgressMeter - NC_035785.1:44133763 764.2 2858410 3740.3 02:47:20.800 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:30.331 INFO ProgressMeter - NC_035785.1:44190860 764.4 2858760 3739.9 02:47:32.328 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:34.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:38.533 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:38.534 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:39.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:40.370 INFO ProgressMeter - NC_035785.1:44408018 764.6 2859970 3740.6 02:47:40.512 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:40.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:42.137 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:42.267 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:43.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:45.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:50.714 INFO ProgressMeter - NC_035785.1:44526491 764.7 2860710 3740.8 02:47:52.728 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:47:59.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:00.775 INFO ProgressMeter - NC_035785.1:44677510 764.9 2861800 3741.4 02:48:01.766 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:01.766 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:01.766 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:10.821 INFO ProgressMeter - NC_035785.1:44782363 765.1 2862610 3741.6 02:48:14.482 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:16.403 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:16.790 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:18.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:20.852 INFO ProgressMeter - NC_035785.1:45025741 765.2 2863900 3742.5 02:48:30.745 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:31.224 INFO ProgressMeter - NC_035785.1:45152349 765.4 2864630 3742.6 02:48:37.766 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:39.731 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:40.560 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:40.560 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:41.289 INFO ProgressMeter - NC_035785.1:45518832 765.6 2866600 3744.3 02:48:44.406 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:44.407 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:50.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:48:51.552 INFO ProgressMeter - NC_035785.1:45667572 765.8 2867670 3744.9 02:48:58.594 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:02.190 INFO ProgressMeter - NC_035785.1:45744630 765.9 2868180 3744.7 02:49:03.255 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:12.492 INFO ProgressMeter - NC_035785.1:45796992 766.1 2868460 3744.2 02:49:19.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:22.550 INFO ProgressMeter - NC_035785.1:45833932 766.3 2868680 3743.7 02:49:30.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:30.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:30.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:30.500 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:32.961 INFO ProgressMeter - NC_035785.1:45911918 766.4 2869120 3743.4 02:49:34.858 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:35.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:36.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:36.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:37.213 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:43.265 INFO ProgressMeter - NC_035785.1:46093506 766.6 2870480 3744.3 02:49:52.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:53.511 INFO ProgressMeter - NC_035785.1:46350887 766.8 2871890 3745.4 02:49:53.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:54.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:54.071 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:54.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:54.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:54.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:59.015 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:49:59.487 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:03.659 INFO ProgressMeter - NC_035785.1:46544807 767.0 2872920 3745.9 02:50:03.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:03.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:05.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:05.986 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:06.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:06.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:06.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:13.788 INFO ProgressMeter - NC_035785.1:46781350 767.1 2874120 3746.6 02:50:14.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:15.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:17.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:17.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:24.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:24.237 INFO ProgressMeter - NC_035785.1:47151301 767.3 2875820 3748.0 02:50:24.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:24.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:30.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:30.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:34.081 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:34.320 INFO ProgressMeter - NC_035785.1:47332742 767.5 2876840 3748.5 02:50:35.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:44.327 INFO ProgressMeter - NC_035785.1:47437521 767.6 2877530 3748.6 02:50:46.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:49.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:53.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:53.754 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:53.754 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:54.359 INFO ProgressMeter - NC_035785.1:47802624 767.8 2879310 3750.1 02:50:54.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:54.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:56.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:57.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:57.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:58.171 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:58.171 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:58.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:58.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:50:59.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:04.387 INFO ProgressMeter - NC_035785.1:48050949 768.0 2880740 3751.1 02:51:13.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:14.469 INFO ProgressMeter - NC_035785.1:48224387 768.1 2881740 3751.6 02:51:14.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:14.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:19.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:20.326 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:24.874 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:24.875 INFO ProgressMeter - NC_035785.1:48626232 768.3 2883720 3753.3 02:51:24.901 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:32.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:34.949 INFO ProgressMeter - NC_035785.1:48823185 768.5 2884780 3753.9 02:51:35.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:35.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:35.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:43.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:44.982 INFO ProgressMeter - NC_035785.1:49147061 768.6 2886400 3755.2 02:51:55.332 INFO ProgressMeter - NC_035785.1:49252412 768.8 2887070 3755.2 02:51:56.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:56.472 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:51:59.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:52:01.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:52:01.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:52:01.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:52:01.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:52:02.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:52:05.337 INFO ProgressMeter - NC_035785.1:49440047 769.0 2888240 3755.9 02:52:15.885 INFO ProgressMeter - NC_035785.1:49522674 769.2 2888800 3755.8 02:52:25.914 INFO ProgressMeter - NC_035785.1:49578682 769.3 2889160 3755.4 02:52:32.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:52:36.122 INFO ProgressMeter - NC_035785.1:49758919 769.5 2890160 3755.9 02:52:45.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:52:46.662 INFO ProgressMeter - NC_035785.1:49925860 769.7 2891170 3756.4 02:52:56.662 INFO ProgressMeter - NC_035785.1:50070998 769.8 2892080 3756.7 02:53:01.063 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:06.764 INFO ProgressMeter - NC_035785.1:50293912 770.0 2893710 3758.0 02:53:16.828 INFO ProgressMeter - NC_035785.1:50506824 770.2 2895070 3759.0 02:53:17.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:17.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:18.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:25.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:25.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:26.835 INFO ProgressMeter - NC_035785.1:50624836 770.3 2895720 3759.0 02:53:27.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:37.573 INFO ProgressMeter - NC_035785.1:50851003 770.5 2897130 3760.0 02:53:37.634 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:41.516 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:47.980 INFO ProgressMeter - NC_035785.1:51023833 770.7 2898230 3760.5 02:53:48.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:50.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:50.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:50.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:53:58.155 INFO ProgressMeter - NC_035785.1:51171592 770.9 2898990 3760.7 02:53:58.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:54:00.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:54:05.460 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:54:06.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:54:06.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:54:08.444 INFO ProgressMeter - NC_035786.1:161481 771.0 2900440 3761.7 02:54:17.202 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:54:18.812 INFO ProgressMeter - NC_035786.1:257517 771.2 2901120 3761.8 02:54:28.426 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:54:28.819 INFO ProgressMeter - NC_035786.1:381597 771.4 2901930 3762.0 02:54:31.085 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:54:31.085 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:54:39.381 INFO ProgressMeter - NC_035786.1:451806 771.6 2902430 3761.8 02:54:42.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:54:49.388 INFO ProgressMeter - NC_035786.1:562733 771.7 2903200 3762.0 02:54:53.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:54:56.264 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:54:59.388 INFO ProgressMeter - NC_035786.1:730468 771.9 2904570 3763.0 02:55:08.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:09.453 INFO ProgressMeter - NC_035786.1:810467 772.1 2905150 3762.9 02:55:09.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:10.206 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:12.836 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:12.837 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:15.755 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:19.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:19.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:19.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:19.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:19.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:19.461 INFO ProgressMeter - NC_035786.1:957289 772.2 2905970 3763.1 02:55:19.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:29.501 INFO ProgressMeter - NC_035786.1:1110081 772.4 2907010 3763.7 02:55:31.863 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:37.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:39.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:39.640 INFO ProgressMeter - NC_035786.1:1224227 772.6 2907820 3763.9 02:55:40.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:49.654 INFO ProgressMeter - NC_035786.1:1416285 772.7 2909380 3765.1 02:55:49.697 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:49.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:55:59.675 INFO ProgressMeter - NC_035786.1:1696746 772.9 2911400 3766.9 02:56:02.401 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:04.417 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:04.417 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:04.417 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:06.024 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:07.515 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:07.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:10.597 INFO ProgressMeter - NC_035786.1:1815603 773.1 2912160 3767.0 02:56:13.817 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:13.817 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:15.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:21.489 INFO ProgressMeter - NC_035786.1:1953513 773.3 2913180 3767.4 02:56:31.951 INFO ProgressMeter - NC_035786.1:2036398 773.4 2913780 3767.4 02:56:32.681 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:32.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:37.649 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:37.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:37.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:38.749 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:42.930 INFO ProgressMeter - NC_035786.1:2296148 773.6 2915260 3768.4 02:56:43.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:45.240 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:56:53.040 INFO ProgressMeter - NC_035786.1:2391930 773.8 2915960 3768.5 02:56:59.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:57:03.273 INFO ProgressMeter - NC_035786.1:2533128 774.0 2916910 3768.9 02:57:07.295 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:57:13.529 INFO ProgressMeter - NC_035786.1:2566713 774.1 2917170 3768.4 02:57:18.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:57:20.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:57:24.386 INFO ProgressMeter - NC_035786.1:2643170 774.3 2917730 3768.2 02:57:29.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:57:34.421 INFO ProgressMeter - NC_035786.1:2710315 774.5 2918190 3768.0 02:57:40.863 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:57:42.232 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:57:43.353 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:57:44.427 INFO ProgressMeter - NC_035786.1:2874664 774.6 2919150 3768.4 02:57:45.763 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:57:54.674 INFO ProgressMeter - NC_035786.1:2978995 774.8 2920000 3768.7 02:57:57.516 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:57:59.823 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:57:59.905 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:04.796 INFO ProgressMeter - NC_035786.1:3252122 775.0 2921460 3769.7 02:58:14.813 INFO ProgressMeter - NC_035786.1:3479253 775.1 2922780 3770.6 02:58:24.943 INFO ProgressMeter - NC_035786.1:3691106 775.3 2923950 3771.3 02:58:27.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:27.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:32.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:34.977 INFO ProgressMeter - NC_035786.1:3995850 775.5 2925640 3772.7 02:58:39.033 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:42.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:43.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:43.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:45.043 INFO ProgressMeter - NC_035786.1:4383079 775.6 2927700 3774.5 02:58:45.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:45.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:45.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:45.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:50.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:50.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:50.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:50.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:50.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:50.822 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:51.250 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:52.669 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:52.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:53.663 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:55.163 INFO ProgressMeter - NC_035786.1:4747879 775.8 2929520 3776.1 02:58:55.364 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:57.854 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:58:57.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:01.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:05.209 INFO ProgressMeter - NC_035786.1:4918483 776.0 2930660 3776.7 02:59:10.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:10.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:10.230 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:10.431 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:13.284 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:15.541 INFO ProgressMeter - NC_035786.1:5103713 776.2 2931990 3777.6 02:59:23.157 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:25.745 INFO ProgressMeter - NC_035786.1:5236308 776.3 2932950 3778.0 02:59:28.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:28.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:28.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:28.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:28.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:28.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:28.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:28.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:28.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:28.943 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:28.943 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:34.585 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:34.585 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:34.897 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:35.772 INFO ProgressMeter - NC_035786.1:5395558 776.5 2934050 3778.6 02:59:41.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:45.750 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 02:59:45.817 INFO ProgressMeter - NC_035786.1:5647618 776.7 2935590 3779.8 02:59:56.280 INFO ProgressMeter - NC_035786.1:5874487 776.8 2937050 3780.8 03:00:01.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:02.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:02.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:05.933 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:06.499 INFO ProgressMeter - NC_035786.1:5956046 777.0 2937620 3780.7 03:00:07.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:08.669 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:16.575 INFO ProgressMeter - NC_035786.1:6181233 777.2 2938870 3781.5 03:00:26.599 INFO ProgressMeter - NC_035786.1:6413856 777.3 2940260 3782.5 03:00:30.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:30.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:36.760 INFO ProgressMeter - NC_035786.1:6494081 777.5 2940760 3782.3 03:00:46.021 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:47.421 INFO ProgressMeter - NC_035786.1:6578509 777.7 2941240 3782.0 03:00:48.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:48.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:48.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:48.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:48.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:57.668 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:57.668 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:57.668 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:00:57.737 INFO ProgressMeter - NC_035786.1:6752877 777.9 2942160 3782.4 03:01:02.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:01:04.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:01:07.763 INFO ProgressMeter - NC_035786.1:6880237 778.0 2943070 3782.7 03:01:16.679 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:01:17.811 INFO ProgressMeter - NC_035786.1:6978316 778.2 2943800 3782.9 03:01:18.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:01:21.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:01:24.386 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:01:24.386 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:01:24.386 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:01:24.386 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:01:24.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:01:26.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:01:27.697 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:01:28.125 INFO ProgressMeter - NC_035786.1:7132758 778.4 2945000 3783.6 03:01:38.816 INFO ProgressMeter - NC_035786.1:7198728 778.5 2945460 3783.3 03:01:49.447 INFO ProgressMeter - NC_035786.1:7207037 778.7 2945510 3782.5 03:02:00.592 INFO ProgressMeter - NC_035786.1:7214850 778.9 2945560 3781.7 03:02:12.484 INFO ProgressMeter - NC_035786.1:7225983 779.1 2945630 3780.8 03:02:22.506 INFO ProgressMeter - NC_035786.1:7234498 779.3 2945690 3780.1 03:02:33.005 INFO ProgressMeter - NC_035786.1:7249814 779.4 2945800 3779.4 03:02:44.096 INFO ProgressMeter - NC_035786.1:7257527 779.6 2945850 3778.5 03:02:48.758 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:02:48.997 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:02:48.998 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:02:49.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:02:49.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:02:49.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:02:49.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:02:49.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:02:51.040 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:02:52.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:02:52.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:02:53.460 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:02:54.264 INFO ProgressMeter - NC_035786.1:7321962 779.8 2946260 3778.2 03:03:05.055 INFO ProgressMeter - NC_035786.1:7511351 780.0 2947540 3779.0 03:03:15.326 INFO ProgressMeter - NC_035786.1:7717740 780.2 2948880 3779.9 03:03:20.351 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:25.627 INFO ProgressMeter - NC_035786.1:7876294 780.3 2949800 3780.2 03:03:27.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:28.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:28.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:28.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:28.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:28.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:28.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:30.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:31.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:31.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:36.891 INFO ProgressMeter - NC_035786.1:8004491 780.5 2950560 3780.3 03:03:39.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:39.195 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:39.195 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:39.195 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:47.282 INFO ProgressMeter - NC_035786.1:8078101 780.7 2951000 3780.0 03:03:47.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:47.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:47.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:53.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:56.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:03:57.303 INFO ProgressMeter - NC_035786.1:8461759 780.9 2953020 3781.8 03:04:02.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:04:07.443 INFO ProgressMeter - NC_035786.1:8576819 781.0 2953590 3781.7 03:04:13.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:04:16.377 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:04:17.783 INFO ProgressMeter - NC_035786.1:8628505 781.2 2953930 3781.3 03:04:28.096 INFO ProgressMeter - NC_035786.1:8675636 781.4 2954300 3781.0 03:04:32.847 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:04:39.378 INFO ProgressMeter - NC_035786.1:8723575 781.6 2954660 3780.5 03:04:49.396 INFO ProgressMeter - NC_035786.1:8773967 781.7 2955070 3780.2 03:04:51.241 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:05:00.256 INFO ProgressMeter - NC_035786.1:8954452 781.9 2956110 3780.7 03:05:10.271 INFO ProgressMeter - NC_035786.1:9087894 782.1 2956890 3780.9 03:05:20.716 INFO ProgressMeter - NC_035786.1:9163936 782.2 2957410 3780.7 03:05:31.361 INFO ProgressMeter - NC_035786.1:9192084 782.4 2957600 3780.1 03:05:41.362 INFO ProgressMeter - NC_035786.1:9219699 782.6 2957810 3779.5 03:05:46.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:05:51.830 INFO ProgressMeter - NC_035786.1:9327911 782.8 2958560 3779.7 03:05:56.765 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:05:59.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:05:59.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:05:59.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:05:59.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:05:59.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:00.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:01.900 INFO ProgressMeter - NC_035786.1:9412272 782.9 2959160 3779.6 03:06:07.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:07.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:08.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:08.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:11.382 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:11.382 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:11.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:11.914 INFO ProgressMeter - NC_035786.1:9725703 783.1 2960750 3780.8 03:06:21.922 INFO ProgressMeter - NC_035786.1:9812152 783.3 2961350 3780.8 03:06:23.746 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:26.503 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:32.031 INFO ProgressMeter - NC_035786.1:9991867 783.4 2962460 3781.4 03:06:42.061 INFO ProgressMeter - NC_035786.1:10179341 783.6 2963670 3782.1 03:06:52.237 INFO ProgressMeter - NC_035786.1:10355989 783.8 2964990 3783.0 03:06:53.201 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:55.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:57.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:58.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:06:59.527 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:02.400 INFO ProgressMeter - NC_035786.1:10618112 783.9 2966450 3784.0 03:07:05.038 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:05.585 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:07.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:10.161 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:10.161 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:12.420 INFO ProgressMeter - NC_035786.1:10740986 784.1 2967360 3784.4 03:07:17.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:18.884 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:19.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:19.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:20.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:22.449 INFO ProgressMeter - NC_035786.1:10920256 784.3 2968390 3784.9 03:07:24.256 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:25.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:32.466 INFO ProgressMeter - NC_035786.1:11178534 784.4 2969850 3786.0 03:07:37.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:43.115 INFO ProgressMeter - NC_035786.1:11364465 784.6 2970960 3786.5 03:07:44.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:44.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:44.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:44.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:49.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:50.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:52.755 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:53.204 INFO ProgressMeter - NC_035786.1:11518201 784.8 2971780 3786.8 03:07:53.375 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:07:57.382 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:03.239 INFO ProgressMeter - NC_035786.1:11729341 784.9 2973090 3787.6 03:08:13.271 INFO ProgressMeter - NC_035786.1:11837227 785.1 2973820 3787.7 03:08:15.040 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:23.284 INFO ProgressMeter - NC_035786.1:11963526 785.3 2974690 3788.0 03:08:28.793 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:29.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:31.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:31.892 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:32.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:32.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:33.369 INFO ProgressMeter - NC_035786.1:12088046 785.5 2975430 3788.2 03:08:33.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:33.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:37.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:37.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:41.064 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:43.892 INFO ProgressMeter - NC_035786.1:12275873 785.6 2976530 3788.7 03:08:43.919 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:43.919 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:46.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:50.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:50.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:50.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:50.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:52.199 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:52.199 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:52.199 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:52.200 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:52.240 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:08:53.986 INFO ProgressMeter - NC_035786.1:12416166 785.8 2977420 3789.1 03:09:04.271 INFO ProgressMeter - NC_035786.1:12542705 786.0 2978190 3789.2 03:09:08.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:08.521 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:08.521 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:08.522 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:08.786 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:12.047 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:12.047 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:14.258 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:14.281 INFO ProgressMeter - NC_035786.1:12823816 786.1 2979750 3790.4 03:09:14.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:14.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:14.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:14.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:15.152 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:15.153 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:16.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:17.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:24.287 INFO ProgressMeter - NC_035786.1:13008132 786.3 2980620 3790.7 03:09:33.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:34.331 INFO ProgressMeter - NC_035786.1:13203913 786.5 2981630 3791.2 03:09:34.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:35.907 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:39.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:40.022 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:42.590 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:44.341 INFO ProgressMeter - NC_035786.1:13522713 786.6 2983290 3792.5 03:09:44.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:46.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:49.035 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:49.036 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:49.486 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:52.001 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:52.001 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:09:54.935 INFO ProgressMeter - NC_035786.1:13768031 786.8 2984980 3793.8 03:10:03.367 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:10:05.221 INFO ProgressMeter - NC_035786.1:14062757 787.0 2986440 3794.8 03:10:15.160 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:10:15.247 INFO ProgressMeter - NC_035786.1:14279574 787.1 2987560 3795.4 03:10:15.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:10:15.758 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:10:15.758 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:10:15.758 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:10:15.758 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:10:15.758 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:10:16.800 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:10:17.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:10:25.769 INFO ProgressMeter - NC_035786.1:14504180 787.3 2988960 3796.3 03:10:36.121 INFO ProgressMeter - NC_035786.1:14652441 787.5 2990210 3797.1 03:10:46.147 INFO ProgressMeter - NC_035786.1:14732499 787.7 2990860 3797.1 03:10:50.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:10:50.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:10:56.400 INFO ProgressMeter - NC_035786.1:14809392 787.8 2991470 3797.1 03:11:03.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:06.105 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:06.539 INFO ProgressMeter - NC_035786.1:14949687 788.0 2992560 3797.6 03:11:09.294 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:16.539 INFO ProgressMeter - NC_035786.1:15172708 788.2 2993730 3798.3 03:11:17.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:17.647 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:23.765 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:23.792 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:24.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:24.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:26.605 INFO ProgressMeter - NC_035786.1:15271382 788.3 2994340 3798.3 03:11:37.103 INFO ProgressMeter - NC_035786.1:15376906 788.5 2995110 3798.4 03:11:41.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:41.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:42.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:45.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:47.103 INFO ProgressMeter - NC_035786.1:15446432 788.7 2995620 3798.3 03:11:50.977 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:52.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:52.671 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:53.211 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:11:57.765 INFO ProgressMeter - NC_035786.1:15558828 788.9 2996460 3798.5 03:12:08.035 INFO ProgressMeter - NC_035786.1:15633106 789.0 2997010 3798.3 03:12:18.169 INFO ProgressMeter - NC_035786.1:15718543 789.2 2997620 3798.3 03:12:26.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:12:28.623 INFO ProgressMeter - NC_035786.1:15787958 789.4 2998180 3798.2 03:12:31.509 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:12:38.775 INFO ProgressMeter - NC_035786.1:15927660 789.5 2999130 3798.6 03:12:48.787 INFO ProgressMeter - NC_035786.1:16078516 789.7 3000190 3799.1 03:12:59.768 INFO ProgressMeter - NC_035786.1:16264303 789.9 3001410 3799.8 03:13:11.386 INFO ProgressMeter - NC_035786.1:16379135 790.1 3002210 3799.9 03:13:21.777 INFO ProgressMeter - NC_035786.1:16414469 790.3 3002490 3799.4 03:13:27.890 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:13:29.411 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:13:32.133 INFO ProgressMeter - NC_035786.1:16705263 790.4 3003950 3800.4 03:13:32.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:13:33.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:13:42.140 INFO ProgressMeter - NC_035786.1:16777097 790.6 3004400 3800.2 03:13:44.063 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:13:45.050 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:13:50.390 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:13:50.390 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:13:52.588 INFO ProgressMeter - NC_035786.1:16867209 790.8 3005030 3800.1 03:13:52.983 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:13:54.583 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:13:55.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:02.679 INFO ProgressMeter - NC_035786.1:17011604 790.9 3005950 3800.5 03:14:08.012 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:12.318 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:13.746 INFO ProgressMeter - NC_035786.1:17195108 791.1 3007010 3800.9 03:14:13.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:23.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:23.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:23.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:23.765 INFO ProgressMeter - NC_035786.1:17493305 791.3 3008450 3801.9 03:14:26.386 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:28.478 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:28.478 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:28.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:28.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:28.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:28.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:33.776 INFO ProgressMeter - NC_035786.1:17840282 791.5 3010320 3803.5 03:14:39.819 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:39.820 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:41.203 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:41.203 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:41.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:42.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:42.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:44.015 INFO ProgressMeter - NC_035786.1:17940809 791.6 3011010 3803.6 03:14:49.020 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:49.020 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:54.023 INFO ProgressMeter - NC_035786.1:18185491 791.8 3012620 3804.8 03:14:56.217 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:56.663 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:59.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:14:59.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:04.035 INFO ProgressMeter - NC_035786.1:18353651 792.0 3013620 3805.3 03:15:07.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:08.050 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:14.090 INFO ProgressMeter - NC_035786.1:18417488 792.1 3014100 3805.1 03:15:24.147 INFO ProgressMeter - NC_035786.1:18468889 792.3 3014440 3804.7 03:15:28.919 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:28.920 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:30.535 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:31.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:34.326 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:34.326 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:34.335 INFO ProgressMeter - NC_035786.1:18638192 792.5 3015370 3805.0 03:15:35.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:35.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:35.508 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:37.090 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:41.554 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:44.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:44.721 INFO ProgressMeter - NC_035786.1:18875273 792.6 3016620 3805.8 03:15:46.466 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:50.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:50.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:50.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:50.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:50.783 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:50.783 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:15:54.726 INFO ProgressMeter - NC_035786.1:19181204 792.8 3018140 3806.9 03:15:59.338 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:16:01.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:16:05.162 INFO ProgressMeter - NC_035786.1:19384467 793.0 3019430 3807.7 03:16:15.287 INFO ProgressMeter - NC_035786.1:19494935 793.2 3020150 3807.8 03:16:19.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:16:19.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:16:19.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:16:23.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:16:25.193 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:16:25.314 INFO ProgressMeter - NC_035786.1:19692530 793.3 3021300 3808.4 03:16:31.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:16:34.185 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:16:35.808 INFO ProgressMeter - NC_035786.1:20026303 793.5 3023020 3809.8 03:16:45.808 INFO ProgressMeter - NC_035786.1:20248470 793.7 3024470 3810.8 03:16:55.610 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:16:55.816 INFO ProgressMeter - NC_035786.1:20464929 793.8 3025940 3811.8 03:16:59.634 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:16:59.634 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:05.973 INFO ProgressMeter - NC_035786.1:20818918 794.0 3027780 3813.3 03:17:06.206 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:06.316 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:06.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:12.130 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:12.131 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:16.280 INFO ProgressMeter - NC_035786.1:21076956 794.2 3029120 3814.2 03:17:16.290 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:16.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:16.617 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:19.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:19.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:19.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:22.378 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:23.080 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:26.417 INFO ProgressMeter - NC_035786.1:21306626 794.3 3030380 3815.0 03:17:30.307 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:30.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:36.574 INFO ProgressMeter - NC_035786.1:21499206 794.5 3031690 3815.8 03:17:39.885 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:41.276 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:41.276 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:46.939 INFO ProgressMeter - NC_035786.1:21712744 794.7 3032740 3816.3 03:17:51.788 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:52.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:52.712 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:17:57.044 INFO ProgressMeter - NC_035786.1:21978594 794.8 3034100 3817.2 03:18:04.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:07.495 INFO ProgressMeter - NC_035786.1:22054817 795.0 3034580 3817.0 03:18:16.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:18.089 INFO ProgressMeter - NC_035786.1:22104178 795.2 3034960 3816.6 03:18:24.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:28.140 INFO ProgressMeter - NC_035786.1:22246972 795.4 3035860 3816.9 03:18:33.040 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:34.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:34.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:34.522 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:34.743 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:38.187 INFO ProgressMeter - NC_035786.1:22435359 795.5 3036990 3817.6 03:18:39.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:40.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:43.167 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:46.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:47.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:48.226 INFO ProgressMeter - NC_035786.1:22631896 795.7 3038180 3818.3 03:18:58.383 INFO ProgressMeter - NC_035786.1:22715624 795.9 3038670 3818.1 03:18:58.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:58.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:18:58.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:02.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:06.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:06.831 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:08.682 INFO ProgressMeter - NC_035786.1:22929817 796.0 3039790 3818.6 03:19:13.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:13.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:13.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:15.265 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:17.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:17.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:18.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:18.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:18.649 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:18.649 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:18.722 INFO ProgressMeter - NC_035786.1:23248900 796.2 3041240 3819.7 03:19:24.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:24.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:25.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:28.898 INFO ProgressMeter - NC_035786.1:23599638 796.4 3042940 3821.0 03:19:28.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:28.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:31.268 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:38.910 INFO ProgressMeter - NC_035786.1:23788957 796.5 3044010 3821.5 03:19:43.691 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:48.912 INFO ProgressMeter - NC_035786.1:23943635 796.7 3045030 3822.0 03:19:50.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:19:53.151 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:00.875 INFO ProgressMeter - NC_035786.1:24052073 796.9 3045750 3821.9 03:20:03.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:03.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:10.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:10.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:10.986 INFO ProgressMeter - NC_035786.1:24239307 797.1 3046980 3822.7 03:20:16.181 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:17.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:21.056 INFO ProgressMeter - NC_035786.1:24387970 797.2 3048080 3823.3 03:20:25.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:25.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:25.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:25.460 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:25.460 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:25.731 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:31.521 INFO ProgressMeter - NC_035786.1:24507630 797.4 3048970 3823.5 03:20:41.829 INFO ProgressMeter - NC_035786.1:24680067 797.6 3050230 3824.3 03:20:52.509 INFO ProgressMeter - NC_035786.1:24788393 797.8 3051100 3824.5 03:20:56.012 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:59.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:20:59.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:02.719 INFO ProgressMeter - NC_035786.1:24868701 797.9 3051640 3824.4 03:21:06.872 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:10.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:12.730 INFO ProgressMeter - NC_035786.1:24971718 798.1 3052320 3824.4 03:21:12.933 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:12.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:13.859 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:14.116 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:18.315 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:22.775 INFO ProgressMeter - NC_035786.1:25246539 798.3 3054020 3825.8 03:21:30.891 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:32.791 INFO ProgressMeter - NC_035786.1:25410991 798.4 3054970 3826.2 03:21:33.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:33.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:33.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:35.480 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:35.480 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:38.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:43.194 INFO ProgressMeter - NC_035786.1:25629637 798.6 3056270 3827.0 03:21:50.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:21:53.207 INFO ProgressMeter - NC_035786.1:25827638 798.8 3057580 3827.8 03:21:59.916 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:22:03.412 INFO ProgressMeter - NC_035786.1:26118964 799.0 3059290 3829.1 03:22:05.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:22:07.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:22:07.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:22:13.428 INFO ProgressMeter - NC_035786.1:26287383 799.1 3060290 3829.6 03:22:17.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:22:25.077 INFO ProgressMeter - NC_035786.1:26338074 799.3 3060640 3829.1 03:22:35.263 INFO ProgressMeter - NC_035786.1:26381913 799.5 3060970 3828.7 03:22:46.143 INFO ProgressMeter - NC_035786.1:26415319 799.7 3061220 3828.1 03:22:48.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:22:49.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:22:51.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:22:56.978 INFO ProgressMeter - NC_035786.1:26465071 799.8 3061620 3827.8 03:23:03.406 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:03.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:06.993 INFO ProgressMeter - NC_035786.1:26682222 800.0 3063120 3828.8 03:23:07.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:15.277 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:15.278 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:17.440 INFO ProgressMeter - NC_035786.1:26824281 800.2 3063960 3829.1 03:23:27.474 INFO ProgressMeter - NC_035786.1:26998174 800.4 3065180 3829.8 03:23:27.647 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:28.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:28.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:28.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:32.389 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:33.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:37.481 INFO ProgressMeter - NC_035786.1:27184545 800.5 3066320 3830.4 03:23:42.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:43.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:47.481 INFO ProgressMeter - NC_035786.1:27522035 800.7 3067960 3831.7 03:23:50.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:57.504 INFO ProgressMeter - NC_035786.1:27639970 800.9 3068770 3831.9 03:23:58.086 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:23:58.983 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:01.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:06.669 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:06.872 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:06.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:06.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:06.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:06.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:06.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:06.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:06.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:07.622 INFO ProgressMeter - NC_035786.1:27768933 801.0 3069680 3832.2 03:24:18.083 INFO ProgressMeter - NC_035786.1:27825166 801.2 3070130 3831.9 03:24:22.749 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:22.808 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:28.216 INFO ProgressMeter - NC_035786.1:27902713 801.4 3070700 3831.8 03:24:35.385 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:36.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:38.278 INFO ProgressMeter - NC_035786.1:28000692 801.5 3071470 3832.0 03:24:40.777 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:48.532 INFO ProgressMeter - NC_035786.1:28093363 801.7 3072140 3832.0 03:24:50.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:51.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:54.182 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:24:59.127 INFO ProgressMeter - NC_035786.1:28168640 801.9 3072750 3831.9 03:25:04.662 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:25:04.662 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:25:09.242 INFO ProgressMeter - NC_035786.1:28219774 802.0 3073120 3831.6 03:25:14.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:25:19.316 INFO ProgressMeter - NC_035786.1:28308789 802.2 3073800 3831.6 03:25:29.321 INFO ProgressMeter - NC_035786.1:28398927 802.4 3074500 3831.7 03:25:32.149 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:25:40.318 INFO ProgressMeter - NC_035786.1:28600016 802.6 3075880 3832.5 03:25:42.534 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:25:45.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:25:50.353 INFO ProgressMeter - NC_035786.1:28756492 802.7 3076830 3832.9 03:25:51.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:25:51.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:25:53.774 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:25:56.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:25:58.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:25:58.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:25:58.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:26:00.576 INFO ProgressMeter - NC_035786.1:28970234 802.9 3078350 3834.0 03:26:10.658 INFO ProgressMeter - NC_035786.1:29147309 803.1 3079390 3834.5 03:26:12.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:26:13.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:26:13.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:26:19.181 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:26:20.714 INFO ProgressMeter - NC_035786.1:29298749 803.2 3080450 3835.0 03:26:30.736 INFO ProgressMeter - NC_035786.1:29573508 803.4 3082030 3836.2 03:26:34.990 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:26:40.779 INFO ProgressMeter - NC_035786.1:29711620 803.6 3083040 3836.7 03:26:47.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:26:50.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:26:50.802 INFO ProgressMeter - NC_035786.1:29915093 803.7 3084340 3837.5 03:26:51.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:26:51.880 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:26:56.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:01.072 INFO ProgressMeter - NC_035786.1:30126900 803.9 3085710 3838.4 03:27:01.507 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:05.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:10.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:10.770 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:11.112 INFO ProgressMeter - NC_035786.1:30316821 804.1 3086810 3838.9 03:27:21.935 INFO ProgressMeter - NC_035786.1:30429099 804.3 3087570 3839.0 03:27:29.407 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:31.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:31.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:31.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:31.628 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:31.958 INFO ProgressMeter - NC_035786.1:30552930 804.4 3088450 3839.3 03:27:36.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:40.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:42.040 INFO ProgressMeter - NC_035786.1:30745452 804.6 3089670 3840.0 03:27:48.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:48.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:48.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:48.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:48.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:50.652 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:51.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:52.053 INFO ProgressMeter - NC_035786.1:30963085 804.8 3090940 3840.8 03:27:58.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:59.042 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:27:59.042 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:02.202 INFO ProgressMeter - NC_035786.1:31109195 804.9 3091800 3841.1 03:28:08.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:09.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:09.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:09.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:13.388 INFO ProgressMeter - NC_035786.1:31332310 805.1 3093070 3841.8 03:28:18.965 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:21.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:23.547 INFO ProgressMeter - NC_035786.1:31476432 805.3 3094020 3842.1 03:28:34.831 INFO ProgressMeter - NC_035786.1:31682011 805.5 3095360 3842.9 03:28:38.710 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:41.026 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:44.221 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:44.251 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:44.269 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:45.812 INFO ProgressMeter - NC_035786.1:31863434 805.7 3096490 3843.4 03:28:53.629 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:53.637 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:55.351 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:55.999 INFO ProgressMeter - NC_035786.1:32041674 805.8 3097560 3843.9 03:28:56.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:28:57.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:29:02.254 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:29:05.999 INFO ProgressMeter - NC_035786.1:32235779 806.0 3098910 3844.8 03:29:09.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:29:16.039 INFO ProgressMeter - NC_035786.1:32428267 806.2 3100080 3845.5 03:29:26.782 INFO ProgressMeter - NC_035786.1:32675122 806.3 3101530 3846.4 03:29:32.069 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:29:32.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:29:33.128 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:29:35.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:29:36.791 INFO ProgressMeter - NC_035786.1:32833140 806.5 3102590 3846.9 03:29:46.846 INFO ProgressMeter - NC_035786.1:32890010 806.7 3102980 3846.6 03:29:56.848 INFO ProgressMeter - NC_035786.1:32979549 806.8 3103600 3846.6 03:30:02.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:06.316 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:07.496 INFO ProgressMeter - NC_035786.1:33055559 807.0 3104060 3846.3 03:30:15.096 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:16.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:16.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:17.587 INFO ProgressMeter - NC_035786.1:33232792 807.2 3104970 3846.6 03:30:23.261 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:23.261 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:25.311 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:27.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:27.977 INFO ProgressMeter - NC_035786.1:33389709 807.4 3106060 3847.2 03:30:29.991 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:38.010 INFO ProgressMeter - NC_035786.1:33498309 807.5 3106850 3847.4 03:30:38.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:40.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:48.033 INFO ProgressMeter - NC_035786.1:33580983 807.7 3107470 3847.3 03:30:48.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:30:58.056 INFO ProgressMeter - NC_035786.1:33678355 807.9 3108240 3847.5 03:31:08.707 INFO ProgressMeter - NC_035786.1:33719955 808.0 3108580 3847.1 03:31:19.240 INFO ProgressMeter - NC_035786.1:33763657 808.2 3108850 3846.6 03:31:23.772 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:31:23.772 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:31:24.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:31:29.265 INFO ProgressMeter - NC_035786.1:33820646 808.4 3109230 3846.2 03:31:31.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:31:40.626 INFO ProgressMeter - NC_035786.1:33869062 808.6 3109580 3845.8 03:31:40.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:31:44.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:31:44.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:31:50.910 INFO ProgressMeter - NC_035786.1:33914327 808.7 3109900 3845.3 03:31:55.811 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:32:01.046 INFO ProgressMeter - NC_035786.1:34033023 808.9 3110540 3845.3 03:32:01.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:32:01.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:32:01.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:32:01.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:32:11.339 INFO ProgressMeter - NC_035786.1:34094497 809.1 3111020 3845.1 03:32:21.342 INFO ProgressMeter - NC_035786.1:34139927 809.3 3111350 3844.7 03:32:31.537 INFO ProgressMeter - NC_035786.1:34204414 809.4 3111820 3844.5 03:32:33.307 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:32:41.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:32:41.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:32:41.664 INFO ProgressMeter - NC_035786.1:34299946 809.6 3112410 3844.4 03:32:51.935 INFO ProgressMeter - NC_035786.1:34338312 809.8 3112710 3844.0 03:33:02.910 INFO ProgressMeter - NC_035786.1:34367630 809.9 3112910 3843.4 03:33:03.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:33:13.525 INFO ProgressMeter - NC_035786.1:34384474 810.1 3113030 3842.7 03:33:13.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:33:16.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:33:23.594 INFO ProgressMeter - NC_035786.1:34444618 810.3 3113450 3842.4 03:33:33.751 INFO ProgressMeter - NC_035786.1:34483242 810.5 3113760 3842.0 03:33:35.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:33:39.468 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:33:41.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:33:44.045 INFO ProgressMeter - NC_035786.1:34576889 810.6 3114430 3842.0 03:33:45.540 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:33:51.258 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:33:54.051 INFO ProgressMeter - NC_035786.1:34638046 810.8 3114920 3841.8 03:33:56.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:04.268 INFO ProgressMeter - NC_035786.1:34680567 811.0 3115220 3841.4 03:34:06.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:06.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:06.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:06.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:06.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:06.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:06.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:06.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:06.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:06.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:06.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:06.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:10.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:15.142 INFO ProgressMeter - NC_035786.1:34719382 811.1 3115460 3840.8 03:34:18.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:18.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:19.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:25.157 INFO ProgressMeter - NC_035786.1:34796082 811.3 3116010 3840.7 03:34:25.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:26.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:26.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:28.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:36.763 INFO ProgressMeter - NC_035786.1:34812760 811.5 3116120 3839.9 03:34:36.774 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:46.814 INFO ProgressMeter - NC_035786.1:34886930 811.7 3116620 3839.7 03:34:47.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:49.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:50.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:34:56.966 INFO ProgressMeter - NC_035786.1:35099849 811.8 3118000 3840.6 03:35:07.047 INFO ProgressMeter - NC_035786.1:35159797 812.0 3118430 3840.4 03:35:17.489 INFO ProgressMeter - NC_035786.1:35204402 812.2 3118790 3840.0 03:35:21.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:27.567 INFO ProgressMeter - NC_035786.1:35290324 812.4 3119430 3840.0 03:35:32.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:32.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:33.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:38.185 INFO ProgressMeter - NC_035786.1:35441693 812.5 3120380 3840.3 03:35:48.519 INFO ProgressMeter - NC_035786.1:35493372 812.7 3120730 3839.9 03:35:48.735 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:48.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:48.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:50.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:50.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:56.965 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:56.965 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:56.965 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:58.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:35:58.542 INFO ProgressMeter - NC_035786.1:35780643 812.9 3122180 3840.9 03:36:08.842 INFO ProgressMeter - NC_035786.1:35860846 813.0 3122750 3840.8 03:36:10.242 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:17.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:17.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:18.889 INFO ProgressMeter - NC_035786.1:35965196 813.2 3123480 3840.9 03:36:25.783 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:25.783 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:28.900 INFO ProgressMeter - NC_035786.1:36013620 813.4 3123820 3840.6 03:36:33.091 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:38.912 INFO ProgressMeter - NC_035786.1:36205735 813.5 3124950 3841.2 03:36:40.669 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:40.669 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:40.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:40.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:43.744 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:46.160 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:49.487 INFO ProgressMeter - NC_035786.1:36577934 813.7 3126960 3842.8 03:36:55.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:36:59.497 INFO ProgressMeter - NC_035786.1:36747728 813.9 3128010 3843.3 03:37:06.765 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:06.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:07.464 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:09.678 INFO ProgressMeter - NC_035786.1:36916898 814.1 3128980 3843.7 03:37:13.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:14.212 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:18.410 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:19.699 INFO ProgressMeter - NC_035786.1:37088350 814.2 3130150 3844.3 03:37:24.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:24.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:24.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:24.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:24.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:26.902 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:29.740 INFO ProgressMeter - NC_035786.1:37307176 814.4 3131490 3845.2 03:37:32.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:33.464 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:33.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:37.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:37.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:37.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:40.106 INFO ProgressMeter - NC_035786.1:37477979 814.6 3132600 3845.7 03:37:41.058 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:41.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:44.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:44.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:48.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:48.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:50.363 INFO ProgressMeter - NC_035786.1:37701617 814.7 3134060 3846.7 03:37:53.814 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:55.353 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:37:58.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:00.388 INFO ProgressMeter - NC_035786.1:37872124 814.9 3135380 3847.6 03:38:08.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:10.451 INFO ProgressMeter - NC_035786.1:37974320 815.1 3136110 3847.7 03:38:10.965 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:15.507 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:15.508 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:15.508 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:20.963 INFO ProgressMeter - NC_035786.1:38103811 815.2 3136990 3847.9 03:38:21.983 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:26.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:30.481 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:31.092 INFO ProgressMeter - NC_035786.1:38255062 815.4 3138090 3848.5 03:38:31.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:32.947 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:33.356 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:33.356 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:36.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:41.112 INFO ProgressMeter - NC_035786.1:38411309 815.6 3139100 3848.9 03:38:43.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:43.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:48.014 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:51.803 INFO ProgressMeter - NC_035786.1:38527414 815.8 3139860 3849.0 03:38:55.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:57.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:57.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:58.241 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:38:58.241 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:39:02.110 INFO ProgressMeter - NC_035786.1:38613087 815.9 3140430 3848.9 03:39:12.111 INFO ProgressMeter - NC_035786.1:38713755 816.1 3141100 3848.9 03:39:16.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:39:16.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:39:18.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:39:18.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:39:20.500 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:39:22.118 INFO ProgressMeter - NC_035786.1:38870184 816.3 3142150 3849.4 03:39:26.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:39:28.115 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:39:32.308 INFO ProgressMeter - NC_035786.1:38939154 816.4 3142610 3849.2 03:39:42.316 INFO ProgressMeter - NC_035786.1:38989984 816.6 3143040 3848.9 03:39:50.978 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:39:50.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:39:52.254 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:39:52.647 INFO ProgressMeter - NC_035786.1:39070848 816.8 3143670 3848.9 03:40:02.697 INFO ProgressMeter - NC_035786.1:39176710 816.9 3144440 3849.0 03:40:04.307 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:06.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:08.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:08.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:08.646 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:08.646 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:08.876 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:09.167 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:12.722 INFO ProgressMeter - NC_035786.1:39372536 817.1 3145660 3849.7 03:40:20.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:20.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:20.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:22.913 INFO ProgressMeter - NC_035786.1:39558580 817.3 3146860 3850.4 03:40:30.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:33.055 INFO ProgressMeter - NC_035786.1:39749021 817.4 3147990 3851.0 03:40:33.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:33.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:39.890 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:42.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:40:43.064 INFO ProgressMeter - NC_035786.1:39892257 817.6 3149000 3851.5 03:40:54.327 INFO ProgressMeter - NC_035786.1:39946575 817.8 3149430 3851.1 03:41:02.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:41:04.506 INFO ProgressMeter - NC_035786.1:40000798 818.0 3149860 3850.8 03:41:14.839 INFO ProgressMeter - NC_035786.1:40043008 818.1 3150180 3850.4 03:41:24.887 INFO ProgressMeter - NC_035786.1:40089017 818.3 3150540 3850.1 03:41:26.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:41:34.907 INFO ProgressMeter - NC_035786.1:40142516 818.5 3150910 3849.7 03:41:34.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:41:41.356 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:41:44.942 INFO ProgressMeter - NC_035786.1:40204634 818.6 3151390 3849.5 03:41:46.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:41:53.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:41:55.002 INFO ProgressMeter - NC_035786.1:40301014 818.8 3152120 3849.6 03:42:05.271 INFO ProgressMeter - NC_035786.1:40576114 819.0 3153630 3850.7 03:42:09.584 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:09.584 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:15.350 INFO ProgressMeter - NC_035786.1:40792967 819.2 3154900 3851.4 03:42:26.231 INFO ProgressMeter - NC_035786.1:40952640 819.3 3155810 3851.7 03:42:28.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:28.276 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:29.943 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:29.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:30.392 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:36.364 INFO ProgressMeter - NC_035786.1:41056388 819.5 3156520 3851.8 03:42:36.417 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:37.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:41.345 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:46.376 INFO ProgressMeter - NC_035786.1:41398159 819.7 3158270 3853.1 03:42:56.606 INFO ProgressMeter - NC_035786.1:41564129 819.8 3159260 3853.5 03:42:57.020 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:57.020 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:57.021 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:42:57.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:43:06.758 INFO ProgressMeter - NC_035786.1:41853130 820.0 3160910 3854.7 03:43:08.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:43:08.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:43:08.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:43:08.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:43:08.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:43:09.081 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:43:10.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:43:10.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:43:16.834 INFO ProgressMeter - NC_035786.1:42037454 820.2 3162020 3855.3 03:43:22.108 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:43:22.108 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:43:26.850 INFO ProgressMeter - NC_035786.1:42210378 820.3 3163190 3855.9 03:43:29.263 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:43:36.900 INFO ProgressMeter - NC_035786.1:42336452 820.5 3164090 3856.2 03:43:46.932 INFO ProgressMeter - NC_035786.1:42381476 820.7 3164420 3855.9 03:43:56.987 INFO ProgressMeter - NC_035786.1:42400264 820.8 3164550 3855.2 03:44:07.315 INFO ProgressMeter - NC_035786.1:42421273 821.0 3164720 3854.6 03:44:17.797 INFO ProgressMeter - NC_035786.1:42459948 821.2 3165020 3854.2 03:44:18.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:44:18.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:44:28.413 INFO ProgressMeter - NC_035786.1:42509491 821.4 3165380 3853.8 03:44:36.493 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:44:38.451 INFO ProgressMeter - NC_035786.1:42540056 821.5 3165590 3853.3 03:44:49.439 INFO ProgressMeter - NC_035786.1:42578782 821.7 3165860 3852.7 03:44:59.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:44:59.720 INFO ProgressMeter - NC_035786.1:42618556 821.9 3166180 3852.3 03:45:05.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:45:08.041 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:45:08.041 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:45:09.809 INFO ProgressMeter - NC_035786.1:42671861 822.1 3166580 3852.0 03:45:20.283 INFO ProgressMeter - NC_035786.1:42702805 822.2 3166810 3851.5 03:45:30.369 INFO ProgressMeter - NC_035786.1:42760634 822.4 3167240 3851.2 03:45:40.469 INFO ProgressMeter - NC_035786.1:42830495 822.6 3167730 3851.0 03:45:42.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:45:46.186 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:45:48.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:45:50.766 INFO ProgressMeter - NC_035786.1:42941164 822.7 3168460 3851.1 03:46:00.819 INFO ProgressMeter - NC_035786.1:43001761 822.9 3168890 3850.8 03:46:10.981 INFO ProgressMeter - NC_035786.1:43063699 823.1 3169380 3850.6 03:46:17.696 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:46:17.697 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:46:18.210 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:46:21.095 INFO ProgressMeter - NC_035786.1:43151179 823.2 3170080 3850.7 03:46:31.190 INFO ProgressMeter - NC_035786.1:43268925 823.4 3170920 3850.9 03:46:42.333 INFO ProgressMeter - NC_035786.1:43389440 823.6 3171880 3851.2 03:46:52.707 INFO ProgressMeter - NC_035786.1:43616639 823.8 3173450 3852.3 03:47:00.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:02.749 INFO ProgressMeter - NC_035786.1:43873005 823.9 3174800 3853.2 03:47:04.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:08.476 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:13.111 INFO ProgressMeter - NC_035786.1:44006166 824.1 3175690 3853.5 03:47:18.263 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:18.377 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:20.481 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:20.481 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:23.251 INFO ProgressMeter - NC_035786.1:44120307 824.3 3176500 3853.7 03:47:30.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:33.340 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:33.340 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:33.561 INFO ProgressMeter - NC_035786.1:44276984 824.5 3177550 3854.1 03:47:42.644 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:42.644 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:44.113 INFO ProgressMeter - NC_035786.1:44369472 824.6 3178240 3854.1 03:47:44.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:45.109 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:46.014 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:47.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:53.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:47:54.135 INFO ProgressMeter - NC_035786.1:44560997 824.8 3179400 3854.8 03:47:58.406 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:48:04.462 INFO ProgressMeter - NC_035786.1:44629026 825.0 3179890 3854.6 03:48:14.723 INFO ProgressMeter - NC_035786.1:44673983 825.1 3180220 3854.2 03:48:16.240 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:48:18.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:48:18.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:48:24.730 INFO ProgressMeter - NC_035786.1:44931213 825.3 3181670 3855.1 03:48:28.764 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:48:34.773 INFO ProgressMeter - NC_035786.1:45141041 825.5 3182830 3855.8 03:48:44.676 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:48:44.790 INFO ProgressMeter - NC_035786.1:45300259 825.6 3183920 3856.3 03:48:44.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:48:49.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:48:49.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:48:51.234 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:48:55.466 INFO ProgressMeter - NC_035786.1:45370264 825.8 3184370 3856.0 03:48:55.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:48:59.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:48:59.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:49:06.563 INFO ProgressMeter - NC_035786.1:45527264 826.0 3185220 3856.2 03:49:11.171 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:49:13.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:49:13.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:49:16.631 INFO ProgressMeter - NC_035786.1:45612419 826.2 3185750 3856.0 03:49:26.679 INFO ProgressMeter - NC_035786.1:45656695 826.3 3186100 3855.7 03:49:32.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:49:36.786 INFO ProgressMeter - NC_035786.1:45781930 826.5 3187070 3856.1 03:49:47.051 INFO ProgressMeter - NC_035786.1:45803805 826.7 3187230 3855.5 03:49:57.480 INFO ProgressMeter - NC_035786.1:45859047 826.9 3187640 3855.1 03:50:05.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:50:07.515 INFO ProgressMeter - NC_035786.1:45890168 827.0 3187870 3854.6 03:50:17.732 INFO ProgressMeter - NC_035786.1:45941123 827.2 3188280 3854.3 03:50:28.644 INFO ProgressMeter - NC_035786.1:45975551 827.4 3188530 3853.8 03:50:29.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:50:39.167 INFO ProgressMeter - NC_035786.1:46037851 827.5 3188980 3853.5 03:50:43.047 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:50:43.047 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:50:46.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:50:48.657 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:50:49.231 INFO ProgressMeter - NC_035786.1:46082308 827.7 3189330 3853.2 03:50:55.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:50:59.258 INFO ProgressMeter - NC_035786.1:46144485 827.9 3189780 3852.9 03:51:04.258 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:51:09.992 INFO ProgressMeter - NC_035786.1:46251929 828.1 3190570 3853.1 03:51:10.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:51:13.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:51:16.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:51:20.139 INFO ProgressMeter - NC_035786.1:46324934 828.2 3191090 3852.9 03:51:30.275 INFO ProgressMeter - NC_035786.1:46396501 828.4 3191570 3852.7 03:51:32.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:51:32.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:51:33.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:51:34.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:51:34.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:51:40.477 INFO ProgressMeter - NC_035786.1:46620958 828.6 3192980 3853.6 03:51:48.758 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:51:51.458 INFO ProgressMeter - NC_035786.1:46747701 828.8 3193800 3853.7 03:51:54.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:51:58.508 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:01.488 INFO ProgressMeter - NC_035786.1:46886838 828.9 3194750 3854.1 03:52:01.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:01.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:01.905 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:01.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:09.449 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:11.509 INFO ProgressMeter - NC_035786.1:47079778 829.1 3195990 3854.8 03:52:12.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:21.722 INFO ProgressMeter - NC_035786.1:47211175 829.3 3196860 3855.1 03:52:22.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:24.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:28.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:31.813 INFO ProgressMeter - NC_035786.1:47308403 829.4 3197530 3855.1 03:52:33.719 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:42.179 INFO ProgressMeter - NC_035786.1:47438418 829.6 3198410 3855.4 03:52:43.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:43.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:52:52.681 INFO ProgressMeter - NC_035786.1:47506522 829.8 3198880 3855.1 03:52:56.242 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:02.750 INFO ProgressMeter - NC_035786.1:47718811 829.9 3200280 3856.0 03:53:13.046 INFO ProgressMeter - NC_035786.1:47893175 830.1 3201470 3856.7 03:53:13.253 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:15.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:15.984 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:17.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:17.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:20.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:20.033 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:20.033 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:23.393 INFO ProgressMeter - NC_035786.1:47985678 830.3 3202070 3856.6 03:53:26.860 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:27.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:27.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:27.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:27.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:33.827 INFO ProgressMeter - NC_035786.1:48130220 830.5 3202810 3856.7 03:53:35.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:37.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:37.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:38.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:38.814 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:38.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:41.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:41.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:42.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:43.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:43.856 INFO ProgressMeter - NC_035786.1:48434621 830.6 3204330 3857.7 03:53:44.296 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:44.296 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:45.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:50.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:50.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:52.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:53.193 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:53.957 INFO ProgressMeter - NC_035786.1:48629734 830.8 3205450 3858.3 03:53:55.139 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:55.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:55.912 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:53:56.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:54:00.572 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:54:01.838 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:54:03.990 INFO ProgressMeter - NC_035786.1:48812386 831.0 3206580 3858.9 03:54:07.744 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:54:14.237 INFO ProgressMeter - NC_035786.1:48955152 831.1 3207640 3859.4 03:54:24.299 INFO ProgressMeter - NC_035786.1:48993116 831.3 3207950 3859.0 03:54:34.340 INFO ProgressMeter - NC_035786.1:49043622 831.5 3208330 3858.6 03:54:44.742 INFO ProgressMeter - NC_035786.1:49117743 831.6 3208820 3858.4 03:54:52.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:54:54.914 INFO ProgressMeter - NC_035786.1:49163763 831.8 3209150 3858.0 03:55:04.944 INFO ProgressMeter - NC_035786.1:49233243 832.0 3209690 3857.9 03:55:05.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:55:14.968 INFO ProgressMeter - NC_035786.1:49304958 832.1 3210190 3857.7 03:55:21.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:55:25.262 INFO ProgressMeter - NC_035786.1:49342454 832.3 3210460 3857.3 03:55:25.912 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:55:25.912 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:55:35.565 INFO ProgressMeter - NC_035786.1:49381954 832.5 3210750 3856.8 03:55:38.240 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:55:43.401 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:55:46.630 INFO ProgressMeter - NC_035786.1:49481969 832.7 3211380 3856.7 03:55:54.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:55:57.175 INFO ProgressMeter - NC_035786.1:49523526 832.8 3211660 3856.2 03:55:57.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:56:07.345 INFO ProgressMeter - NC_035786.1:49561179 833.0 3211950 3855.8 03:56:08.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:56:17.378 INFO ProgressMeter - NC_035786.1:49614675 833.2 3212330 3855.5 03:56:27.721 INFO ProgressMeter - NC_035786.1:49683053 833.4 3212860 3855.3 03:56:31.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:56:31.474 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:56:31.474 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:56:31.480 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:56:37.784 INFO ProgressMeter - NC_035786.1:49749757 833.5 3213390 3855.2 03:56:47.930 INFO ProgressMeter - NC_035786.1:49808721 833.7 3213860 3855.0 03:56:58.334 INFO ProgressMeter - NC_035786.1:49832819 833.9 3214050 3854.4 03:57:08.653 INFO ProgressMeter - NC_035786.1:49852539 834.0 3214210 3853.8 03:57:19.223 INFO ProgressMeter - NC_035786.1:49881914 834.2 3214450 3853.3 03:57:29.297 INFO ProgressMeter - NC_035786.1:49933405 834.4 3214880 3853.0 03:57:39.436 INFO ProgressMeter - NC_035786.1:50009230 834.6 3215430 3852.9 03:57:39.967 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:57:39.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:57:41.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:57:41.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:57:41.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:57:49.525 INFO ProgressMeter - NC_035786.1:50125363 834.7 3216240 3853.1 03:57:59.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:00.560 INFO ProgressMeter - NC_035786.1:50285627 834.9 3217460 3853.7 03:58:00.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:00.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:01.890 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:02.152 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:02.152 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:04.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:04.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:04.990 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:11.963 INFO ProgressMeter - NC_035786.1:50462969 835.1 3218680 3854.3 03:58:21.149 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:22.306 INFO ProgressMeter - NC_035786.1:50527690 835.3 3219180 3854.1 03:58:29.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:32.358 INFO ProgressMeter - NC_035786.1:50709894 835.4 3220310 3854.7 03:58:34.728 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:39.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:58:42.378 INFO ProgressMeter - NC_035786.1:50882761 835.6 3221520 3855.3 03:58:52.450 INFO ProgressMeter - NC_035786.1:51085892 835.8 3222830 3856.1 03:59:02.866 INFO ProgressMeter - NC_035786.1:51139683 835.9 3223230 3855.8 03:59:06.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:12.872 INFO ProgressMeter - NC_035786.1:51191276 836.1 3223620 3855.5 03:59:24.127 INFO ProgressMeter - NC_035786.1:51248416 836.3 3224090 3855.2 03:59:34.175 INFO ProgressMeter - NC_035786.1:51292660 836.5 3224390 3854.8 03:59:35.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:35.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:35.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:35.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:36.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:36.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:36.312 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:36.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:36.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:37.481 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:38.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:41.482 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:41.482 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:43.378 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:43.378 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:44.202 INFO ProgressMeter - NC_035786.1:51450422 836.6 3225330 3855.1 03:59:44.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:44.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:44.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:44.770 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:44.770 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:44.770 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:45.166 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:47.206 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:49.744 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:52.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:52.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:54.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 03:59:54.401 INFO ProgressMeter - NC_035786.1:51762847 836.8 3226880 3856.2 03:59:55.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:00:04.611 INFO ProgressMeter - NC_035786.1:51848010 837.0 3227360 3856.0 04:00:10.916 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:00:15.090 INFO ProgressMeter - NC_035786.1:51945905 837.1 3227970 3855.9 04:00:25.491 INFO ProgressMeter - NC_035786.1:52002891 837.3 3228440 3855.7 04:00:36.289 INFO ProgressMeter - NC_035786.1:52048854 837.5 3228790 3855.3 04:00:46.464 INFO ProgressMeter - NC_035786.1:52086517 837.7 3229080 3854.8 04:00:57.048 INFO ProgressMeter - NC_035786.1:52115695 837.8 3229310 3854.3 04:01:01.356 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:01:05.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:01:07.139 INFO ProgressMeter - NC_035786.1:52225084 838.0 3230040 3854.4 04:01:07.297 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:01:07.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:01:07.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:01:08.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:01:11.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:01:11.535 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:01:12.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:01:17.303 INFO ProgressMeter - NC_035786.1:52322619 838.2 3230750 3854.5 04:01:27.688 INFO ProgressMeter - NC_035786.1:52382099 838.4 3231220 3854.2 04:01:34.905 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:01:38.417 INFO ProgressMeter - NC_035786.1:52436191 838.5 3231570 3853.8 04:01:45.866 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:01:49.708 INFO ProgressMeter - NC_035786.1:52458678 838.7 3231740 3853.2 04:01:59.982 INFO ProgressMeter - NC_035786.1:52486134 838.9 3231950 3852.6 04:02:10.576 INFO ProgressMeter - NC_035786.1:52507413 839.1 3232100 3852.0 04:02:14.861 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:02:14.861 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:02:15.069 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:02:15.070 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:02:19.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:02:20.602 INFO ProgressMeter - NC_035786.1:52596521 839.2 3232630 3851.9 04:02:30.630 INFO ProgressMeter - NC_035786.1:52650985 839.4 3233010 3851.5 04:02:33.085 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:02:33.085 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:02:33.085 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:02:33.085 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:02:33.085 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:02:33.085 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:02:40.887 INFO ProgressMeter - NC_035786.1:52712959 839.6 3233470 3851.3 04:02:47.356 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:02:51.010 INFO ProgressMeter - NC_035786.1:52750904 839.7 3233740 3850.9 04:02:51.933 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:01.631 INFO ProgressMeter - NC_035786.1:52820958 839.9 3234290 3850.7 04:03:05.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:07.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:07.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:07.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:07.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:08.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:08.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:08.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:08.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:12.111 INFO ProgressMeter - NC_035786.1:52849651 840.1 3234470 3850.1 04:03:12.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:16.017 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:16.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:22.258 INFO ProgressMeter - NC_035786.1:52900352 840.3 3234860 3849.8 04:03:32.470 INFO ProgressMeter - NC_035786.1:52994790 840.4 3235490 3849.8 04:03:37.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:42.471 INFO ProgressMeter - NC_035786.1:53104505 840.6 3236240 3849.9 04:03:52.679 INFO ProgressMeter - NC_035786.1:53210211 840.8 3236820 3849.8 04:03:55.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:58.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:58.557 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:58.557 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:03:58.557 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:04:00.553 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:04:02.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:04:02.693 INFO ProgressMeter - NC_035786.1:53350064 840.9 3237550 3849.9 04:04:05.518 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:04:05.519 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:04:08.276 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:04:11.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:04:11.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:04:13.082 INFO ProgressMeter - NC_035786.1:53533725 841.1 3238560 3850.3 04:04:23.145 INFO ProgressMeter - NC_035786.1:53568323 841.3 3238810 3849.9 04:04:33.194 INFO ProgressMeter - NC_035786.1:53654254 841.4 3239520 3849.9 04:04:43.422 INFO ProgressMeter - NC_035786.1:53700500 841.6 3239890 3849.6 04:04:46.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:04:53.694 INFO ProgressMeter - NC_035786.1:53752973 841.8 3240230 3849.2 04:04:56.575 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:04:58.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:04:59.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:04.131 INFO ProgressMeter - NC_035786.1:53853138 842.0 3240860 3849.2 04:05:10.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:10.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:13.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:14.408 INFO ProgressMeter - NC_035786.1:53959134 842.1 3241720 3849.4 04:05:15.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:15.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:15.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:17.297 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:20.051 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:24.735 INFO ProgressMeter - NC_035786.1:54114708 842.3 3242800 3849.9 04:05:28.955 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:28.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:28.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:31.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:31.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:32.340 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:34.957 INFO ProgressMeter - NC_035786.1:54241155 842.5 3243640 3850.1 04:05:37.517 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:41.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:41.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:45.135 INFO ProgressMeter - NC_035786.1:54405686 842.6 3244570 3850.4 04:05:45.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:45.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:55.320 INFO ProgressMeter - NC_035786.1:54700569 842.8 3246040 3851.4 04:05:55.831 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:05:55.831 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:05.566 INFO ProgressMeter - NC_035786.1:54925753 843.0 3247470 3852.3 04:06:06.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:12.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:12.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:15.610 INFO ProgressMeter - NC_035786.1:55038320 843.2 3248210 3852.4 04:06:19.392 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:23.276 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:23.540 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:25.710 INFO ProgressMeter - NC_035786.1:55219148 843.3 3249360 3853.0 04:06:32.744 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:34.091 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:35.750 INFO ProgressMeter - NC_035786.1:55381759 843.5 3250390 3853.5 04:06:42.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:44.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:48.211 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:48.953 INFO ProgressMeter - NC_035786.1:55569552 843.7 3251360 3853.6 04:06:54.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:54.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:55.231 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:55.231 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:56.777 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:58.785 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:58.785 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:06:58.975 INFO ProgressMeter - NC_035786.1:55788812 843.9 3252390 3854.1 04:07:00.403 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:07:09.022 INFO ProgressMeter - NC_035786.1:55869512 844.0 3252920 3854.0 04:07:19.080 INFO ProgressMeter - NC_035786.1:56020106 844.2 3253940 3854.4 04:07:22.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:07:29.369 INFO ProgressMeter - NC_035786.1:56117984 844.4 3254600 3854.4 04:07:29.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:07:29.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:07:39.543 INFO ProgressMeter - NC_035786.1:56132807 844.6 3254710 3853.8 04:07:49.339 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:07:50.886 INFO ProgressMeter - NC_035786.1:56158260 844.7 3254880 3853.1 04:07:50.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:01.045 INFO ProgressMeter - NC_035786.1:56176915 844.9 3255010 3852.5 04:08:11.144 INFO ProgressMeter - NC_035786.1:56215785 845.1 3255290 3852.0 04:08:11.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:11.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:11.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:11.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:12.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:12.971 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:12.971 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:21.615 INFO ProgressMeter - NC_035786.1:56298318 845.3 3255860 3851.9 04:08:29.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:31.625 INFO ProgressMeter - NC_035786.1:56336311 845.4 3256150 3851.5 04:08:41.734 INFO ProgressMeter - NC_035786.1:56401650 845.6 3256580 3851.2 04:08:51.959 INFO ProgressMeter - NC_035786.1:56440218 845.8 3256880 3850.8 04:08:55.598 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:55.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:55.673 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:55.673 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:55.674 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:56.404 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:08:58.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:00.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:02.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:02.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:02.086 INFO ProgressMeter - NC_035786.1:56504741 845.9 3257320 3850.6 04:09:07.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:12.440 INFO ProgressMeter - NC_035786.1:56561821 846.1 3257640 3850.2 04:09:12.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:12.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:12.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:13.447 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:13.447 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:15.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:22.663 INFO ProgressMeter - NC_035786.1:56617417 846.3 3258020 3849.8 04:09:32.109 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:33.157 INFO ProgressMeter - NC_035786.1:56691025 846.4 3258500 3849.6 04:09:43.199 INFO ProgressMeter - NC_035786.1:56746204 846.6 3258830 3849.2 04:09:45.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:09:53.263 INFO ProgressMeter - NC_035786.1:56796851 846.8 3259180 3848.9 04:10:01.507 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:03.276 INFO ProgressMeter - NC_035786.1:56855545 847.0 3259610 3848.6 04:10:08.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:08.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:08.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:08.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:08.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:08.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:11.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:11.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:11.594 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:16.388 INFO ProgressMeter - NC_035786.1:56907033 847.2 3259890 3848.0 04:10:16.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:26.576 INFO ProgressMeter - NC_035786.1:56964049 847.3 3260310 3847.7 04:10:36.602 INFO ProgressMeter - NC_035786.1:57044781 847.5 3260860 3847.6 04:10:43.016 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:43.643 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:44.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:44.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:10:47.049 INFO ProgressMeter - NC_035786.1:57086549 847.7 3261180 3847.2 04:10:57.983 INFO ProgressMeter - NC_035786.1:57129472 847.9 3261500 3846.7 04:11:08.211 INFO ProgressMeter - NC_035786.1:57171941 848.0 3261820 3846.3 04:11:18.442 INFO ProgressMeter - NC_035786.1:57207411 848.2 3262090 3845.9 04:11:28.474 INFO ProgressMeter - NC_035786.1:57259878 848.4 3262460 3845.6 04:11:31.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:31.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:32.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:32.776 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:32.776 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:34.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:34.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:36.872 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:38.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:38.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:38.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:38.529 INFO ProgressMeter - NC_035786.1:57366906 848.5 3263250 3845.7 04:11:44.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:48.948 INFO ProgressMeter - NC_035786.1:57455759 848.7 3263810 3845.6 04:11:49.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:51.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:51.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:51.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:51.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:52.927 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:57.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:58.484 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:11:58.972 INFO ProgressMeter - NC_035786.1:57568176 848.9 3264510 3845.7 04:12:01.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:12:02.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:12:02.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:12:08.978 INFO ProgressMeter - NC_035786.1:57739617 849.0 3265600 3846.2 04:12:11.186 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:12:11.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:12:19.142 INFO ProgressMeter - NC_035787.1:76401 849.2 3266750 3846.8 04:12:26.074 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:12:29.195 INFO ProgressMeter - NC_035787.1:353670 849.4 3268400 3848.0 04:12:37.029 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:12:39.515 INFO ProgressMeter - NC_035787.1:561202 849.6 3269760 3848.8 04:12:49.640 INFO ProgressMeter - NC_035787.1:653573 849.7 3270430 3848.8 04:12:55.375 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:12:55.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:12:59.662 INFO ProgressMeter - NC_035787.1:799898 849.9 3271390 3849.2 04:13:05.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:13:09.842 INFO ProgressMeter - NC_035787.1:904566 850.1 3271970 3849.1 04:13:19.850 INFO ProgressMeter - NC_035787.1:965627 850.2 3272410 3848.9 04:13:21.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:13:29.955 INFO ProgressMeter - NC_035787.1:1051732 850.4 3272990 3848.8 04:13:34.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:13:36.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:13:39.985 INFO ProgressMeter - NC_035787.1:1128126 850.6 3273480 3848.6 04:13:47.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:13:47.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:13:47.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:13:47.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:13:47.361 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:13:50.016 INFO ProgressMeter - NC_035787.1:1230343 850.7 3274180 3848.7 04:13:53.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:00.112 INFO ProgressMeter - NC_035787.1:1418000 850.9 3275410 3849.4 04:14:08.414 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:10.127 INFO ProgressMeter - NC_035787.1:1550450 851.1 3276250 3849.6 04:14:15.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:15.419 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:20.160 INFO ProgressMeter - NC_035787.1:1733131 851.2 3277400 3850.2 04:14:25.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:26.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:30.227 INFO ProgressMeter - NC_035787.1:1968658 851.4 3278830 3851.1 04:14:40.601 INFO ProgressMeter - NC_035787.1:2117531 851.6 3279690 3851.3 04:14:40.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:40.914 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:43.431 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:43.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:43.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:43.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:51.073 INFO ProgressMeter - NC_035787.1:2200801 851.7 3280190 3851.1 04:14:56.676 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:56.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:14:56.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:01.312 INFO ProgressMeter - NC_035787.1:2331700 851.9 3281050 3851.4 04:15:04.193 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:04.666 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:09.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:10.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:10.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:11.886 INFO ProgressMeter - NC_035787.1:2752373 852.1 3283150 3853.0 04:15:21.949 INFO ProgressMeter - NC_035787.1:2864048 852.3 3283810 3853.1 04:15:25.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:32.338 INFO ProgressMeter - NC_035787.1:2909226 852.4 3284130 3852.6 04:15:40.137 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:40.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:40.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:40.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:40.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:40.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:40.600 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:40.600 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:41.098 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:42.346 INFO ProgressMeter - NC_035787.1:3081574 852.6 3285360 3853.3 04:15:50.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:15:52.363 INFO ProgressMeter - NC_035787.1:3237275 852.8 3286400 3853.8 04:15:56.756 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:16:02.555 INFO ProgressMeter - NC_035787.1:3326256 852.9 3287040 3853.8 04:16:12.791 INFO ProgressMeter - NC_035787.1:3513805 853.1 3288260 3854.4 04:16:22.410 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:16:22.855 INFO ProgressMeter - NC_035787.1:3657996 853.3 3289280 3854.9 04:16:22.916 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:16:33.590 INFO ProgressMeter - NC_035787.1:3713819 853.5 3289630 3854.5 04:16:34.897 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:16:35.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:16:35.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:16:35.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:16:35.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:16:40.430 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:16:40.430 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:16:43.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:16:43.616 INFO ProgressMeter - NC_035787.1:3782420 853.6 3290150 3854.3 04:16:54.502 INFO ProgressMeter - NC_035787.1:3881477 853.8 3290850 3854.3 04:17:05.505 INFO ProgressMeter - NC_035787.1:3943389 854.0 3291310 3854.1 04:17:07.521 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:09.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:13.848 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:13.849 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:13.849 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:15.543 INFO ProgressMeter - NC_035787.1:4039034 854.2 3291990 3854.1 04:17:24.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:24.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:24.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:24.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:24.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:24.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:25.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:25.895 INFO ProgressMeter - NC_035787.1:4222580 854.3 3293170 3854.7 04:17:27.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:28.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:29.197 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:29.197 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:29.307 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:29.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:35.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:36.004 INFO ProgressMeter - NC_035787.1:4378299 854.5 3294070 3855.0 04:17:46.013 INFO ProgressMeter - NC_035787.1:4589104 854.7 3295060 3855.4 04:17:51.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:53.912 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:53.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:55.564 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:55.610 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:17:56.014 INFO ProgressMeter - NC_035787.1:4768512 854.8 3296230 3856.0 04:18:06.082 INFO ProgressMeter - NC_035787.1:4860173 855.0 3296760 3855.9 04:18:10.461 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:16.112 INFO ProgressMeter - NC_035787.1:4918083 855.2 3297220 3855.7 04:18:16.353 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:16.353 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:16.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:16.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:16.444 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:16.793 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:16.794 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:16.876 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:19.581 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:22.243 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:26.551 INFO ProgressMeter - NC_035787.1:5033827 855.3 3297990 3855.8 04:18:28.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:31.738 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:32.130 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:34.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:36.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:36.925 INFO ProgressMeter - NC_035787.1:5309684 855.5 3299820 3857.1 04:18:42.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:44.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:18:47.667 INFO ProgressMeter - NC_035787.1:5531907 855.7 3300940 3857.6 04:18:58.407 INFO ProgressMeter - NC_035787.1:5683487 855.9 3301940 3858.0 04:18:59.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:19:00.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:19:08.416 INFO ProgressMeter - NC_035787.1:5841424 856.0 3302990 3858.5 04:19:13.234 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:19:19.161 INFO ProgressMeter - NC_035787.1:6001274 856.2 3303810 3858.6 04:19:19.898 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:19:29.164 INFO ProgressMeter - NC_035787.1:6103178 856.4 3304480 3858.7 04:19:39.327 INFO ProgressMeter - NC_035787.1:6208854 856.6 3305240 3858.8 04:19:40.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:19:49.566 INFO ProgressMeter - NC_035787.1:6366140 856.7 3306340 3859.3 04:19:59.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:19:59.568 INFO ProgressMeter - NC_035787.1:6491590 856.9 3307220 3859.6 04:20:08.544 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:08.544 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:08.544 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:08.544 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:09.721 INFO ProgressMeter - NC_035787.1:6562349 857.1 3307640 3859.3 04:20:10.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:10.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:14.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:19.890 INFO ProgressMeter - NC_035787.1:6629725 857.2 3308080 3859.0 04:20:24.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:29.921 INFO ProgressMeter - NC_035787.1:6692924 857.4 3308550 3858.8 04:20:32.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:40.119 INFO ProgressMeter - NC_035787.1:6839811 857.6 3309590 3859.3 04:20:43.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:44.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:48.080 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:50.372 INFO ProgressMeter - NC_035787.1:7052635 857.7 3310940 3860.1 04:20:52.980 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:20:57.406 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:00.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:00.761 INFO ProgressMeter - NC_035787.1:7295336 857.9 3312540 3861.2 04:21:03.277 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:06.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:06.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:06.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:10.766 INFO ProgressMeter - NC_035787.1:7500030 858.1 3313830 3861.9 04:21:13.439 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:13.439 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:14.063 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:21.141 INFO ProgressMeter - NC_035787.1:7762476 858.2 3315480 3863.1 04:21:21.235 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:23.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:23.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:24.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:31.146 INFO ProgressMeter - NC_035787.1:7985418 858.4 3317020 3864.1 04:21:37.230 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:37.230 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:37.230 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:38.814 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:41.263 INFO ProgressMeter - NC_035787.1:8190678 858.6 3318190 3864.7 04:21:48.254 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:49.157 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:49.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:51.326 INFO ProgressMeter - NC_035787.1:8353468 858.8 3319210 3865.2 04:21:55.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:21:58.719 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:22:00.358 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:22:00.358 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:22:00.367 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:22:01.442 INFO ProgressMeter - NC_035787.1:8525448 858.9 3320320 3865.7 04:22:11.608 INFO ProgressMeter - NC_035787.1:8551733 859.1 3320530 3865.2 04:22:21.658 INFO ProgressMeter - NC_035787.1:8590047 859.3 3320820 3864.8 04:22:31.669 INFO ProgressMeter - NC_035787.1:8646519 859.4 3321190 3864.4 04:22:32.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:22:35.686 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:22:35.686 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:22:42.888 INFO ProgressMeter - NC_035787.1:8687346 859.6 3321470 3863.9 04:22:47.625 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:22:47.625 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:22:48.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:22:48.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:22:54.185 INFO ProgressMeter - NC_035787.1:8699788 859.8 3321560 3863.2 04:23:04.390 INFO ProgressMeter - NC_035787.1:8713106 860.0 3321650 3862.5 04:23:15.531 INFO ProgressMeter - NC_035787.1:8728186 860.2 3321750 3861.8 04:23:15.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:23:19.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:23:25.537 INFO ProgressMeter - NC_035787.1:8777493 860.3 3322090 3861.5 04:23:36.147 INFO ProgressMeter - NC_035787.1:8890898 860.5 3322950 3861.7 04:23:46.884 INFO ProgressMeter - NC_035787.1:8934997 860.7 3323320 3861.3 04:23:52.086 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:23:54.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:23:54.136 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:23:57.400 INFO ProgressMeter - NC_035787.1:9064264 860.9 3324250 3861.6 04:23:57.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:24:03.338 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:24:07.477 INFO ProgressMeter - NC_035787.1:9246847 861.0 3325410 3862.2 04:24:12.461 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:24:12.461 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:24:12.461 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:24:12.461 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:24:17.486 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:24:17.498 INFO ProgressMeter - NC_035787.1:9479775 861.2 3326720 3862.9 04:24:27.659 INFO ProgressMeter - NC_035787.1:9685904 861.4 3328020 3863.7 04:24:34.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:24:37.685 INFO ProgressMeter - NC_035787.1:9963518 861.5 3329480 3864.6 04:24:41.324 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:24:46.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:24:46.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:24:47.739 INFO ProgressMeter - NC_035787.1:10128134 861.7 3330530 3865.1 04:24:51.136 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:24:58.290 INFO ProgressMeter - NC_035787.1:10370057 861.9 3332010 3866.0 04:25:08.291 INFO ProgressMeter - NC_035787.1:10535792 862.0 3333210 3866.7 04:25:10.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:10.292 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:11.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:11.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:11.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:18.344 INFO ProgressMeter - NC_035787.1:10629138 862.2 3333760 3866.6 04:25:22.325 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:22.325 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:22.550 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:28.664 INFO ProgressMeter - NC_035787.1:10903358 862.4 3335590 3867.9 04:25:30.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:34.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:34.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:34.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:34.727 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:34.885 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:34.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:34.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:34.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:34.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:36.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:36.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:36.834 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:39.008 INFO ProgressMeter - NC_035787.1:11149506 862.5 3336820 3868.6 04:25:39.102 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:49.645 INFO ProgressMeter - NC_035787.1:11221274 862.7 3337290 3868.3 04:25:52.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:52.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:25:59.665 INFO ProgressMeter - NC_035787.1:11407417 862.9 3338460 3868.9 04:26:04.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:07.887 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:07.888 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:07.888 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:09.730 INFO ProgressMeter - NC_035787.1:11542940 863.1 3339340 3869.2 04:26:19.773 INFO ProgressMeter - NC_035787.1:11771008 863.2 3340590 3869.9 04:26:24.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:30.002 INFO ProgressMeter - NC_035787.1:11906895 863.4 3341570 3870.3 04:26:36.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:36.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:36.683 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:36.683 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:40.112 INFO ProgressMeter - NC_035787.1:12180386 863.6 3343260 3871.5 04:26:42.785 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:44.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:44.047 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:44.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:44.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:49.484 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:26:50.330 INFO ProgressMeter - NC_035787.1:12374980 863.7 3344320 3871.9 04:27:00.554 INFO ProgressMeter - NC_035787.1:12535757 863.9 3345430 3872.5 04:27:00.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:09.823 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:09.846 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:10.929 INFO ProgressMeter - NC_035787.1:12735988 864.1 3346720 3873.2 04:27:14.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:17.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:21.099 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:21.755 INFO ProgressMeter - NC_035787.1:12954171 864.3 3348130 3874.0 04:27:21.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:25.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:25.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:25.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:27.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:27.230 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:27.495 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:31.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:31.430 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:31.763 INFO ProgressMeter - NC_035787.1:13179425 864.4 3349500 3874.8 04:27:33.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:33.232 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:40.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:41.967 INFO ProgressMeter - NC_035787.1:13354765 864.6 3350600 3875.3 04:27:42.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:42.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:43.383 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:43.383 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:46.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:47.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:51.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:51.661 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:51.661 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:51.661 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:51.968 INFO ProgressMeter - NC_035787.1:13594877 864.8 3352060 3876.3 04:27:54.673 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:55.264 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:56.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:58.058 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:58.398 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:58.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:58.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:58.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:58.588 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:27:59.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:28:02.018 INFO ProgressMeter - NC_035787.1:13740082 864.9 3352930 3876.5 04:28:03.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:28:12.838 INFO ProgressMeter - NC_035787.1:13859730 865.1 3353610 3876.5 04:28:22.866 INFO ProgressMeter - NC_035787.1:13872396 865.3 3353700 3875.9 04:28:30.640 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:28:32.997 INFO ProgressMeter - NC_035787.1:13891503 865.4 3353840 3875.3 04:28:43.916 INFO ProgressMeter - NC_035787.1:13912795 865.6 3353990 3874.6 04:28:54.080 INFO ProgressMeter - NC_035787.1:13922300 865.8 3354060 3874.0 04:29:04.284 INFO ProgressMeter - NC_035787.1:13942054 866.0 3354210 3873.4 04:29:14.317 INFO ProgressMeter - NC_035787.1:13966680 866.1 3354410 3872.9 04:29:19.371 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:29:24.338 INFO ProgressMeter - NC_035787.1:14029677 866.3 3354850 3872.6 04:29:29.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:29:34.582 INFO ProgressMeter - NC_035787.1:14139568 866.5 3355710 3872.8 04:29:37.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:29:39.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:29:44.907 INFO ProgressMeter - NC_035787.1:14185143 866.6 3356050 3872.5 04:29:54.956 INFO ProgressMeter - NC_035787.1:14243719 866.8 3356460 3872.2 04:30:05.984 INFO ProgressMeter - NC_035787.1:14257294 867.0 3356550 3871.5 04:30:07.286 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:16.063 INFO ProgressMeter - NC_035787.1:14295617 867.2 3356830 3871.0 04:30:17.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:17.891 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:18.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:18.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:23.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:23.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:23.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:23.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:23.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:23.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:23.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:23.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:23.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:23.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:23.613 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:26.089 INFO ProgressMeter - NC_035787.1:14368143 867.3 3357300 3870.8 04:30:26.289 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:34.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:36.278 INFO ProgressMeter - NC_035787.1:14427862 867.5 3357760 3870.6 04:30:46.428 INFO ProgressMeter - NC_035787.1:14449896 867.7 3357940 3870.1 04:30:51.389 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:54.476 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:54.476 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:30:56.779 INFO ProgressMeter - NC_035787.1:14476176 867.8 3358140 3869.5 04:31:02.144 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:31:03.127 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:31:05.010 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:31:06.091 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:31:07.654 INFO ProgressMeter - NC_035787.1:14502521 868.0 3358310 3868.9 04:31:17.705 INFO ProgressMeter - NC_035787.1:14537316 868.2 3358580 3868.5 04:31:27.776 INFO ProgressMeter - NC_035787.1:14580028 868.4 3358910 3868.1 04:31:29.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:31:32.831 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:31:34.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:31:34.261 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:31:38.096 INFO ProgressMeter - NC_035787.1:14734935 868.5 3359970 3868.6 04:31:48.105 INFO ProgressMeter - NC_035787.1:14836868 868.7 3360710 3868.7 04:31:58.112 INFO ProgressMeter - NC_035787.1:15019877 868.9 3361700 3869.1 04:32:08.711 INFO ProgressMeter - NC_035787.1:15217921 869.0 3363000 3869.8 04:32:14.534 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:32:18.726 INFO ProgressMeter - NC_035787.1:15508456 869.2 3364500 3870.8 04:32:24.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:32:28.993 INFO ProgressMeter - NC_035787.1:15616566 869.4 3365240 3870.9 04:32:30.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:32:32.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:32:39.142 INFO ProgressMeter - NC_035787.1:15723273 869.5 3366020 3871.0 04:32:49.207 INFO ProgressMeter - NC_035787.1:15748242 869.7 3366220 3870.5 04:33:00.590 INFO ProgressMeter - NC_035787.1:15772771 869.9 3366410 3869.9 04:33:11.391 INFO ProgressMeter - NC_035787.1:15793065 870.1 3366560 3869.2 04:33:21.891 INFO ProgressMeter - NC_035787.1:15808282 870.3 3366660 3868.6 04:33:32.313 INFO ProgressMeter - NC_035787.1:15853878 870.4 3367010 3868.2 04:33:39.012 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:33:42.365 INFO ProgressMeter - NC_035787.1:15942408 870.6 3367710 3868.3 04:33:52.456 INFO ProgressMeter - NC_035787.1:16016479 870.8 3368270 3868.2 04:33:57.493 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:33:57.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:33:57.579 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:02.525 INFO ProgressMeter - NC_035787.1:16057840 870.9 3368590 3867.8 04:34:10.417 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:12.813 INFO ProgressMeter - NC_035787.1:16148313 871.1 3369170 3867.7 04:34:18.575 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:19.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:22.682 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:22.817 INFO ProgressMeter - NC_035787.1:16228136 871.3 3369770 3867.6 04:34:22.847 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:24.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:33.081 INFO ProgressMeter - NC_035787.1:16260238 871.4 3370000 3867.1 04:34:33.444 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:35.922 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:35.922 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:35.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:35.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:35.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:41.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:41.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:41.712 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:43.199 INFO ProgressMeter - NC_035787.1:16336138 871.6 3370450 3866.9 04:34:46.442 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:34:53.486 INFO ProgressMeter - NC_035787.1:16417556 871.8 3370920 3866.7 04:35:03.725 INFO ProgressMeter - NC_035787.1:16525266 872.0 3371590 3866.7 04:35:10.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:10.503 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:12.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:12.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:13.828 INFO ProgressMeter - NC_035787.1:16724297 872.1 3372740 3867.3 04:35:23.892 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:23.894 INFO ProgressMeter - NC_035787.1:16872159 872.3 3373710 3867.6 04:35:25.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:25.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:25.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:25.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:25.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:27.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:33.973 INFO ProgressMeter - NC_035787.1:17101959 872.5 3375040 3868.4 04:35:34.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:34.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:34.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:37.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:38.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:44.356 INFO ProgressMeter - NC_035787.1:17249224 872.6 3375910 3868.6 04:35:44.791 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:44.805 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:45.087 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:47.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:47.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:47.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:48.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:49.326 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:49.326 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:49.326 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:49.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:49.669 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:49.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:49.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:51.535 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:35:54.638 INFO ProgressMeter - NC_035787.1:17383921 872.8 3376730 3868.8 04:36:04.684 INFO ProgressMeter - NC_035787.1:17486075 873.0 3377410 3868.9 04:36:14.777 INFO ProgressMeter - NC_035787.1:17631924 873.1 3378350 3869.2 04:36:14.817 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:36:17.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:36:17.897 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:36:24.802 INFO ProgressMeter - NC_035787.1:17827768 873.3 3379550 3869.8 04:36:36.672 INFO ProgressMeter - NC_035787.1:17918478 873.5 3380150 3869.6 04:36:45.172 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:36:46.674 INFO ProgressMeter - NC_035787.1:17956970 873.7 3380420 3869.2 04:36:47.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:36:57.260 INFO ProgressMeter - NC_035787.1:18016420 873.8 3380870 3868.9 04:37:07.282 INFO ProgressMeter - NC_035787.1:18067238 874.0 3381220 3868.6 04:37:12.572 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:17.615 INFO ProgressMeter - NC_035787.1:18212312 874.2 3382180 3868.9 04:37:18.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:18.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:20.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:20.828 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:21.967 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:27.948 INFO ProgressMeter - NC_035787.1:18293901 874.4 3382700 3868.8 04:37:33.933 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:35.476 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:38.299 INFO ProgressMeter - NC_035787.1:18414370 874.5 3383400 3868.8 04:37:44.799 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:44.799 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:44.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:44.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:48.594 INFO ProgressMeter - NC_035787.1:18532183 874.7 3384070 3868.8 04:37:54.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:37:58.744 INFO ProgressMeter - NC_035787.1:18670591 874.9 3384870 3869.0 04:38:01.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:01.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:01.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:01.038 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:01.038 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:01.788 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:02.130 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:08.896 INFO ProgressMeter - NC_035787.1:18774945 875.0 3385530 3869.0 04:38:09.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:11.047 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:11.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:12.717 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:14.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:14.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:14.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:19.005 INFO ProgressMeter - NC_035787.1:18953814 875.2 3386550 3869.4 04:38:29.033 INFO ProgressMeter - NC_035787.1:19068416 875.4 3387320 3869.5 04:38:29.095 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:31.114 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:31.114 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:35.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:39.182 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:39.182 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:39.184 INFO ProgressMeter - NC_035787.1:19186542 875.5 3388070 3869.7 04:38:44.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:49.207 INFO ProgressMeter - NC_035787.1:19346986 875.7 3389120 3870.1 04:38:54.912 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:57.713 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:58.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:58.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:38:59.326 INFO ProgressMeter - NC_035787.1:19620087 875.9 3390730 3871.2 04:39:04.503 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:06.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:06.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:09.628 INFO ProgressMeter - NC_035787.1:19705059 876.1 3391400 3871.2 04:39:20.336 INFO ProgressMeter - NC_035787.1:19772682 876.2 3391900 3871.0 04:39:23.564 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:27.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:29.474 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:29.474 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:30.510 INFO ProgressMeter - NC_035787.1:20031479 876.4 3393210 3871.7 04:39:30.871 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:32.078 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:32.078 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:32.082 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:39.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:39.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:39.366 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:40.605 INFO ProgressMeter - NC_035787.1:20197555 876.6 3394130 3872.0 04:39:46.239 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:39:51.623 INFO ProgressMeter - NC_035787.1:20465490 876.8 3395790 3873.1 04:40:00.558 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:01.715 INFO ProgressMeter - NC_035787.1:20529187 876.9 3396270 3872.9 04:40:04.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:12.009 INFO ProgressMeter - NC_035787.1:20656215 877.1 3397160 3873.2 04:40:12.493 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:12.493 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:22.016 INFO ProgressMeter - NC_035787.1:20867711 877.3 3398340 3873.8 04:40:22.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:31.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:31.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:32.036 INFO ProgressMeter - NC_035787.1:20989337 877.4 3399100 3873.9 04:40:35.355 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:42.055 INFO ProgressMeter - NC_035787.1:21224748 877.6 3400410 3874.7 04:40:50.309 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:52.537 INFO ProgressMeter - NC_035787.1:21354734 877.8 3401320 3875.0 04:40:54.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:55.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:55.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:55.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:55.746 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:56.154 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:56.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:40:56.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:02.405 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:03.328 INFO ProgressMeter - NC_035787.1:21703510 878.0 3402830 3875.9 04:41:04.610 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:07.550 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:07.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:07.896 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:07.896 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:11.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:13.596 INFO ProgressMeter - NC_035787.1:21918775 878.1 3403960 3876.4 04:41:24.370 INFO ProgressMeter - NC_035787.1:22104233 878.3 3405050 3876.9 04:41:27.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:27.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:34.385 INFO ProgressMeter - NC_035787.1:22241881 878.5 3405930 3877.1 04:41:41.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:41.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:44.547 INFO ProgressMeter - NC_035787.1:22450683 878.6 3407130 3877.7 04:41:53.625 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:54.523 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:54.555 INFO ProgressMeter - NC_035787.1:22596601 878.8 3407950 3877.9 04:41:57.989 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:58.395 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:58.395 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:58.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:59.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:59.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:41:59.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:00.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:03.770 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:04.571 INFO ProgressMeter - NC_035787.1:22857764 879.0 3409390 3878.8 04:42:07.400 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:09.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:12.336 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:14.986 INFO ProgressMeter - NC_035787.1:23062635 879.1 3410640 3879.5 04:42:20.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:25.025 INFO ProgressMeter - NC_035787.1:23166129 879.3 3411350 3879.6 04:42:31.274 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:33.717 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:35.078 INFO ProgressMeter - NC_035787.1:23371153 879.5 3412390 3880.0 04:42:38.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:39.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:45.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:45.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:46.043 INFO ProgressMeter - NC_035787.1:23631916 879.7 3413880 3880.9 04:42:53.836 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:53.837 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:54.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:55.553 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:42:56.768 INFO ProgressMeter - NC_035787.1:23737485 879.8 3414560 3880.9 04:43:00.367 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:00.367 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:01.785 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:02.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:02.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:06.934 INFO ProgressMeter - NC_035787.1:24007042 880.0 3415930 3881.7 04:43:16.969 INFO ProgressMeter - NC_035787.1:24174148 880.2 3417150 3882.3 04:43:17.296 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:20.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:20.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:25.668 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:27.385 INFO ProgressMeter - NC_035787.1:24347140 880.4 3418270 3882.8 04:43:33.967 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:36.449 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:37.353 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:37.390 INFO ProgressMeter - NC_035787.1:24529110 880.5 3419250 3883.2 04:43:37.912 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:43.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:43.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:46.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:46.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:46.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:46.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:43:47.467 INFO ProgressMeter - NC_035787.1:24754224 880.7 3420370 3883.8 04:43:57.486 INFO ProgressMeter - NC_035787.1:24811309 880.9 3420780 3883.5 04:43:58.927 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:44:07.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:44:07.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:44:08.815 INFO ProgressMeter - NC_035787.1:25001430 881.0 3421870 3883.9 04:44:18.973 INFO ProgressMeter - NC_035787.1:25157738 881.2 3423030 3884.5 04:44:25.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:44:25.494 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:44:27.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:44:29.093 INFO ProgressMeter - NC_035787.1:25513225 881.4 3424790 3885.7 04:44:39.268 INFO ProgressMeter - NC_035787.1:25584605 881.6 3425340 3885.6 04:44:49.297 INFO ProgressMeter - NC_035787.1:25667890 881.7 3425970 3885.6 04:44:52.535 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:44:56.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:44:56.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:44:59.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:44:59.616 INFO ProgressMeter - NC_035787.1:25811719 881.9 3426850 3885.8 04:45:06.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:09.692 INFO ProgressMeter - NC_035787.1:25929654 882.1 3427640 3886.0 04:45:15.955 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:16.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:16.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:16.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:16.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:17.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:19.869 INFO ProgressMeter - NC_035787.1:26141280 882.2 3428720 3886.4 04:45:25.710 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:28.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:29.874 INFO ProgressMeter - NC_035787.1:26301533 882.4 3429670 3886.8 04:45:34.160 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:34.160 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:39.881 INFO ProgressMeter - NC_035787.1:26448595 882.6 3430410 3886.9 04:45:39.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:50.098 INFO ProgressMeter - NC_035787.1:26678752 882.7 3431450 3887.3 04:45:50.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:52.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:52.944 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:54.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:54.484 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:54.484 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:45:54.484 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:46:00.365 INFO ProgressMeter - NC_035787.1:26853057 882.9 3432550 3887.8 04:46:10.380 INFO ProgressMeter - NC_035787.1:26974449 883.1 3433380 3888.0 04:46:20.883 INFO ProgressMeter - NC_035787.1:27038364 883.2 3433900 3887.8 04:46:30.917 INFO ProgressMeter - NC_035787.1:27081154 883.4 3434240 3887.5 04:46:41.206 INFO ProgressMeter - NC_035787.1:27143910 883.6 3434700 3887.2 04:46:45.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:46:48.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:46:50.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:46:51.855 INFO ProgressMeter - NC_035787.1:27202578 883.8 3435100 3886.9 04:46:52.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:02.752 INFO ProgressMeter - NC_035787.1:27362663 883.9 3436070 3887.2 04:47:05.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:05.085 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:05.386 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:05.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:07.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:07.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:10.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:10.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:12.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:12.141 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:12.753 INFO ProgressMeter - NC_035787.1:27645565 884.1 3437520 3888.1 04:47:15.697 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:20.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:22.843 INFO ProgressMeter - NC_035787.1:27849371 884.3 3438620 3888.6 04:47:23.986 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:24.684 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:25.278 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:25.278 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:25.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:25.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:25.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:28.861 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:33.560 INFO ProgressMeter - NC_035787.1:27953977 884.5 3439270 3888.6 04:47:33.933 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:43.605 INFO ProgressMeter - NC_035787.1:28122874 884.6 3440130 3888.8 04:47:53.662 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:47:53.663 INFO ProgressMeter - NC_035787.1:28138105 884.8 3440230 3888.2 04:48:03.759 INFO ProgressMeter - NC_035787.1:28209811 885.0 3440750 3888.0 04:48:13.916 INFO ProgressMeter - NC_035787.1:28253453 885.1 3441070 3887.7 04:48:24.147 INFO ProgressMeter - NC_035787.1:28309100 885.3 3441490 3887.4 04:48:34.646 INFO ProgressMeter - NC_035787.1:28399083 885.5 3442100 3887.3 04:48:40.779 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:48:42.607 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:48:44.768 INFO ProgressMeter - NC_035787.1:28453151 885.6 3442490 3887.0 04:48:45.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:48:55.815 INFO ProgressMeter - NC_035787.1:28522971 885.8 3442970 3886.7 04:48:57.664 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:48:57.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:48:57.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:48:57.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:48:57.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:48:57.787 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:49:00.230 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:49:00.230 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:49:06.484 INFO ProgressMeter - NC_035787.1:28584099 886.0 3443440 3886.5 04:49:16.487 INFO ProgressMeter - NC_035787.1:28679958 886.2 3444070 3886.5 04:49:17.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:49:21.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:49:26.643 INFO ProgressMeter - NC_035787.1:28761902 886.3 3444640 3886.4 04:49:36.659 INFO ProgressMeter - NC_035787.1:28834224 886.5 3445180 3886.2 04:49:41.077 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:49:41.077 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:49:46.668 INFO ProgressMeter - NC_035787.1:28891926 886.7 3445630 3886.0 04:49:56.893 INFO ProgressMeter - NC_035787.1:28949547 886.8 3446070 3885.8 04:50:04.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:50:07.283 INFO ProgressMeter - NC_035787.1:29038185 887.0 3446730 3885.8 04:50:17.715 INFO ProgressMeter - NC_035787.1:29096865 887.2 3447170 3885.5 04:50:28.226 INFO ProgressMeter - NC_035787.1:29195869 887.4 3447680 3885.3 04:50:32.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:50:38.375 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:50:38.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:50:38.388 INFO ProgressMeter - NC_035787.1:29277230 887.5 3448200 3885.1 04:50:45.438 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:50:45.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:50:48.959 INFO ProgressMeter - NC_035787.1:29372279 887.7 3448810 3885.1 04:50:51.289 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:50:57.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:50:57.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:50:58.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:50:58.969 INFO ProgressMeter - NC_035787.1:29468794 887.9 3449360 3884.9 04:51:00.572 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:05.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:08.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:09.005 INFO ProgressMeter - NC_035787.1:29551290 888.0 3449930 3884.9 04:51:09.407 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:09.408 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:09.408 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:09.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:11.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:19.148 INFO ProgressMeter - NC_035787.1:29701035 888.2 3450800 3885.1 04:51:29.229 INFO ProgressMeter - NC_035787.1:29852390 888.4 3451810 3885.5 04:51:29.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:29.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:29.512 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:29.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:30.285 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:30.285 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:34.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:34.919 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:36.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:39.587 INFO ProgressMeter - NC_035787.1:29993641 888.6 3452710 3885.8 04:51:48.697 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:48.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:50.291 INFO ProgressMeter - NC_035787.1:30197993 888.7 3453760 3886.2 04:51:50.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:50.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:50.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:50.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:52.081 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:52.081 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:52.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:53.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:53.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:53.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:53.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:53.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:53.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:53.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:53.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:53.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:54.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:54.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:54.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:54.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:54.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:55.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:56.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:56.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:56.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:56.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:51:57.533 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:00.590 INFO ProgressMeter - NC_035787.1:30291092 888.9 3454450 3886.2 04:52:06.598 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:07.217 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:07.217 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:07.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:07.337 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:09.598 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:10.636 INFO ProgressMeter - NC_035787.1:30414096 889.1 3455170 3886.3 04:52:11.991 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:11.991 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:11.991 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:11.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:12.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:12.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:16.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:17.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:17.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:17.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:17.610 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:17.610 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:20.641 INFO ProgressMeter - NC_035787.1:30522634 889.2 3455860 3886.3 04:52:21.542 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:23.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:24.536 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:24.537 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:24.537 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:24.537 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:24.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:25.588 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:25.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:25.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:25.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:25.590 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:25.590 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:26.140 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:26.153 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:26.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:28.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:30.677 INFO ProgressMeter - NC_035787.1:30915806 889.4 3457870 3887.8 04:52:36.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:36.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:36.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:36.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:40.774 INFO ProgressMeter - NC_035787.1:31060072 889.6 3458890 3888.2 04:52:46.814 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:46.814 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:46.814 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:46.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:46.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:50.786 INFO ProgressMeter - NC_035787.1:31303637 889.7 3460380 3889.2 04:52:54.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:52:54.932 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:00.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:00.844 INFO ProgressMeter - NC_035787.1:31461189 889.9 3461380 3889.6 04:53:10.866 INFO ProgressMeter - NC_035787.1:31751442 890.1 3462930 3890.6 04:53:12.810 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:12.810 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:16.136 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:16.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:17.361 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:20.414 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:21.243 INFO ProgressMeter - NC_035787.1:32031206 890.2 3464630 3891.8 04:53:22.512 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:23.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:29.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:31.428 INFO ProgressMeter - NC_035787.1:32251881 890.4 3465860 3892.4 04:53:31.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:32.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:41.470 INFO ProgressMeter - NC_035787.1:32399957 890.6 3466830 3892.7 04:53:42.365 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:48.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:51.691 INFO ProgressMeter - NC_035787.1:32554281 890.8 3467890 3893.2 04:53:52.014 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:53:54.808 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:00.572 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:01.752 INFO ProgressMeter - NC_035787.1:32788054 890.9 3469720 3894.5 04:54:08.508 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:08.699 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:09.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:09.291 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:09.292 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:12.205 INFO ProgressMeter - NC_035787.1:32973612 891.1 3471060 3895.3 04:54:19.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:20.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:20.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:20.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:20.755 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:23.285 INFO ProgressMeter - NC_035787.1:33195594 891.3 3472510 3896.1 04:54:28.259 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:28.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:28.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:28.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:28.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:28.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:29.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:33.415 INFO ProgressMeter - NC_035787.1:33470257 891.5 3474150 3897.2 04:54:40.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:40.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:40.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:43.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:43.419 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:43.425 INFO ProgressMeter - NC_035787.1:33709425 891.6 3475530 3898.0 04:54:47.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:47.121 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:52.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:54:53.508 INFO ProgressMeter - NC_035787.1:33862855 891.8 3476370 3898.2 04:54:54.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:05.016 INFO ProgressMeter - NC_035787.1:33990016 892.0 3477130 3898.2 04:55:14.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:15.424 INFO ProgressMeter - NC_035787.1:34168599 892.2 3478140 3898.6 04:55:16.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:22.837 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:22.837 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:25.589 INFO ProgressMeter - NC_035787.1:34451063 892.3 3479780 3899.7 04:55:28.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:31.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:31.859 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:31.859 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:35.923 INFO ProgressMeter - NC_035787.1:34574052 892.5 3480590 3899.8 04:55:41.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:41.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:42.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:42.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:43.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.488 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.488 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:44.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:45.962 INFO ProgressMeter - NC_035787.1:34843922 892.7 3482060 3900.8 04:55:49.838 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:55:55.998 INFO ProgressMeter - NC_035787.1:34964802 892.8 3482890 3901.0 04:56:02.691 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:56:02.691 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:56:06.124 INFO ProgressMeter - NC_035787.1:35206928 893.0 3484160 3901.6 04:56:07.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:56:07.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:56:14.129 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:56:14.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:56:16.365 INFO ProgressMeter - NC_035787.1:35494865 893.2 3485670 3902.6 04:56:26.453 INFO ProgressMeter - NC_035787.1:35662582 893.3 3486720 3903.0 04:56:28.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:56:36.520 INFO ProgressMeter - NC_035787.1:35696953 893.5 3486990 3902.6 04:56:47.216 INFO ProgressMeter - NC_035787.1:35776921 893.7 3487580 3902.5 04:56:48.504 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:56:57.448 INFO ProgressMeter - NC_035787.1:35879007 893.9 3488280 3902.5 04:56:58.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:57:07.473 INFO ProgressMeter - NC_035787.1:35953354 894.0 3488760 3902.3 04:57:17.844 INFO ProgressMeter - NC_035787.1:36006510 894.2 3489100 3902.0 04:57:18.986 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:57:24.131 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:57:25.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:57:25.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:57:27.966 INFO ProgressMeter - NC_035787.1:36097190 894.4 3489720 3901.9 04:57:38.184 INFO ProgressMeter - NC_035787.1:36164096 894.5 3490200 3901.7 04:57:44.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:57:48.610 INFO ProgressMeter - NC_035787.1:36216585 894.7 3490540 3901.3 04:57:59.024 INFO ProgressMeter - NC_035787.1:36296960 894.9 3491060 3901.2 04:58:09.409 INFO ProgressMeter - NC_035787.1:36371419 895.1 3491510 3900.9 04:58:20.090 INFO ProgressMeter - NC_035787.1:36413058 895.2 3491770 3900.4 04:58:24.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:58:30.201 INFO ProgressMeter - NC_035787.1:36574896 895.4 3492750 3900.8 04:58:40.945 INFO ProgressMeter - NC_035787.1:36624942 895.6 3493080 3900.4 04:58:50.958 INFO ProgressMeter - NC_035787.1:36666412 895.7 3493380 3900.0 04:58:54.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:58:59.983 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:59:01.197 INFO ProgressMeter - NC_035787.1:36747683 895.9 3493890 3899.8 04:59:11.238 INFO ProgressMeter - NC_035787.1:36814514 896.1 3494310 3899.5 04:59:21.315 INFO ProgressMeter - NC_035787.1:36888269 896.3 3494720 3899.3 04:59:31.503 INFO ProgressMeter - NC_035787.1:36922726 896.4 3494970 3898.8 04:59:42.815 INFO ProgressMeter - NC_035787.1:36965518 896.6 3495260 3898.3 04:59:54.104 INFO ProgressMeter - NC_035787.1:37055535 896.8 3495820 3898.1 04:59:55.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 04:59:55.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:04.122 INFO ProgressMeter - NC_035787.1:37115190 897.0 3496280 3897.9 05:00:08.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:10.993 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:11.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:12.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:12.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:14.490 INFO ProgressMeter - NC_035787.1:37225278 897.1 3496960 3897.9 05:00:19.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:24.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:24.652 INFO ProgressMeter - NC_035787.1:37277289 897.3 3497370 3897.6 05:00:28.308 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:29.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:29.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:34.712 INFO ProgressMeter - NC_035787.1:37520422 897.5 3498610 3898.3 05:00:36.050 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:36.050 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:36.051 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:36.793 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:43.146 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:45.178 INFO ProgressMeter - NC_035787.1:37697312 897.6 3499710 3898.8 05:00:55.274 INFO ProgressMeter - NC_035787.1:37764072 897.8 3500200 3898.6 05:00:56.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:00:56.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:02.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:02.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:02.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:02.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:02.777 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:03.239 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:05.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:05.401 INFO ProgressMeter - NC_035787.1:37950580 898.0 3501460 3899.2 05:01:06.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:15.544 INFO ProgressMeter - NC_035787.1:38091397 898.2 3502510 3899.7 05:01:23.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:25.576 INFO ProgressMeter - NC_035787.1:38205175 898.3 3503150 3899.7 05:01:26.012 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:26.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:26.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:26.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:26.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:35.986 INFO ProgressMeter - NC_035787.1:38344254 898.5 3504070 3899.9 05:01:42.437 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:45.075 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:46.226 INFO ProgressMeter - NC_035787.1:38479731 898.7 3505050 3900.3 05:01:48.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:51.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:54.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:01:56.238 INFO ProgressMeter - NC_035787.1:38765982 898.8 3506580 3901.3 05:02:00.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:00.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:00.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:00.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:00.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:00.943 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:06.414 INFO ProgressMeter - NC_035787.1:38907669 899.0 3507600 3901.7 05:02:08.338 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:16.513 INFO ProgressMeter - NC_035787.1:39130023 899.2 3508900 3902.4 05:02:26.566 INFO ProgressMeter - NC_035787.1:39260884 899.3 3509750 3902.6 05:02:28.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:36.752 INFO ProgressMeter - NC_035787.1:39459200 899.5 3510840 3903.1 05:02:41.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:42.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:43.964 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:45.025 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:46.402 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:46.403 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:46.450 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:46.824 INFO ProgressMeter - NC_035787.1:39686706 899.7 3512150 3903.8 05:02:47.817 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:02:56.943 INFO ProgressMeter - NC_035787.1:39954090 899.8 3513790 3904.9 05:02:58.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:00.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:00.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:03.450 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:03.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:05.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:05.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:07.235 INFO ProgressMeter - NC_035787.1:40170330 900.0 3515160 3905.7 05:03:09.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:10.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:11.264 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:11.324 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:11.535 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:13.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:14.144 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:14.144 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:14.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:17.630 INFO ProgressMeter - NC_035787.1:40434536 900.2 3516630 3906.5 05:03:24.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:25.057 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:27.653 INFO ProgressMeter - NC_035787.1:40768378 900.4 3518620 3908.0 05:03:32.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:38.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:38.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:38.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:38.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:38.546 INFO ProgressMeter - NC_035787.1:40871095 900.5 3519190 3907.9 05:03:39.554 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:39.554 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:39.554 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:39.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:39.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:39.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:39.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:39.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:39.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:39.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:39.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:39.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:03:48.932 INFO ProgressMeter - NC_035787.1:40960577 900.7 3519700 3907.7 05:03:59.667 INFO ProgressMeter - NC_035787.1:40980462 900.9 3519830 3907.1 05:04:09.925 INFO ProgressMeter - NC_035787.1:41045788 901.1 3520310 3906.8 05:04:13.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:13.874 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:13.874 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:16.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:16.141 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:17.455 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:19.095 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:19.564 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:19.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:20.139 INFO ProgressMeter - NC_035787.1:41377261 901.2 3522320 3908.3 05:04:21.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:22.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:24.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:24.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:29.774 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:30.143 INFO ProgressMeter - NC_035787.1:41623753 901.4 3523990 3909.5 05:04:36.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:36.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:40.262 INFO ProgressMeter - NC_035787.1:41737892 901.6 3524710 3909.5 05:04:40.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:40.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:40.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:41.332 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:42.859 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:44.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:44.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:45.885 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:46.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:50.462 INFO ProgressMeter - NC_035787.1:42104113 901.7 3526650 3911.0 05:04:50.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:52.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:52.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:54.683 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:54.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:55.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:55.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:55.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:04:56.341 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:05:00.468 INFO ProgressMeter - NC_035787.1:42402624 901.9 3528310 3912.1 05:05:01.461 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:05:01.461 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:05:10.557 INFO ProgressMeter - NC_035787.1:42580243 902.1 3529510 3912.7 05:05:20.760 INFO ProgressMeter - NC_035787.1:42665359 902.2 3530230 3912.7 05:05:30.918 INFO ProgressMeter - NC_035787.1:42757395 902.4 3530910 3912.8 05:05:40.966 INFO ProgressMeter - NC_035787.1:42822944 902.6 3531350 3912.5 05:05:43.255 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:05:49.950 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:05:50.792 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:05:50.793 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:05:51.019 INFO ProgressMeter - NC_035787.1:42909964 902.7 3531970 3912.5 05:05:53.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:05:54.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:05:54.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:01.352 INFO ProgressMeter - NC_035787.1:42945694 902.9 3532220 3912.0 05:06:03.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:03.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:07.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:07.377 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:07.377 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:11.636 INFO ProgressMeter - NC_035787.1:43008742 903.1 3532650 3911.7 05:06:15.647 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:15.647 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:16.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:16.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:17.091 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:20.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:21.789 INFO ProgressMeter - NC_035787.1:43282197 903.3 3534050 3912.6 05:06:30.421 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:32.092 INFO ProgressMeter - NC_035787.1:43307740 903.4 3534210 3912.0 05:06:32.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:40.115 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:43.329 INFO ProgressMeter - NC_035787.1:43359046 903.6 3534540 3911.5 05:06:44.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:50.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:50.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:50.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:50.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:50.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:06:53.472 INFO ProgressMeter - NC_035787.1:43404621 903.8 3534850 3911.2 05:06:57.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:02.159 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:03.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:06.639 INFO ProgressMeter - NC_035787.1:43444713 904.0 3535120 3910.5 05:07:09.699 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:09.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:12.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:12.269 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:16.956 INFO ProgressMeter - NC_035787.1:43482190 904.2 3535380 3910.0 05:07:21.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:21.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:27.114 INFO ProgressMeter - NC_035787.1:43517207 904.3 3535600 3909.6 05:07:31.235 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:34.626 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:35.963 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:36.903 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:37.385 INFO ProgressMeter - NC_035787.1:43564777 904.5 3535920 3909.2 05:07:37.412 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:37.412 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:37.412 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:37.412 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:38.251 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:48.725 INFO ProgressMeter - NC_035787.1:43604655 904.7 3536150 3908.6 05:07:53.512 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:53.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:53.514 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:53.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:07:59.137 INFO ProgressMeter - NC_035787.1:43644544 904.9 3536400 3908.1 05:08:09.142 INFO ProgressMeter - NC_035787.1:43737500 905.0 3536940 3908.0 05:08:13.987 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:13.987 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:17.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:17.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:17.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:17.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:17.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:17.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:17.459 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:17.460 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:17.460 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:19.550 INFO ProgressMeter - NC_035787.1:43826350 905.2 3537470 3907.9 05:08:21.572 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:21.572 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:28.459 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:29.937 INFO ProgressMeter - NC_035787.1:43876269 905.4 3537830 3907.5 05:08:33.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:35.837 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:40.008 INFO ProgressMeter - NC_035787.1:43959729 905.6 3538360 3907.4 05:08:43.674 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:46.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:50.270 INFO ProgressMeter - NC_035787.1:43994574 905.7 3538590 3906.9 05:08:51.914 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:55.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:57.325 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:08:58.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:09:01.168 INFO ProgressMeter - NC_035787.1:44027907 905.9 3538820 3906.3 05:09:04.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:09:04.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:09:04.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:09:12.118 INFO ProgressMeter - NC_035787.1:44054500 906.1 3539010 3905.8 05:09:22.663 INFO ProgressMeter - NC_035787.1:44095446 906.3 3539340 3905.4 05:09:23.332 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:09:23.888 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:09:33.988 INFO ProgressMeter - NC_035787.1:44168403 906.5 3539790 3905.1 05:09:44.556 INFO ProgressMeter - NC_035787.1:44179856 906.6 3539870 3904.4 05:09:55.452 INFO ProgressMeter - NC_035787.1:44227036 906.8 3540220 3904.0 05:10:03.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:06.637 INFO ProgressMeter - NC_035787.1:44302971 907.0 3540730 3903.8 05:10:12.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:12.820 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:12.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:12.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:13.836 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:13.836 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:16.983 INFO ProgressMeter - NC_035787.1:44468540 907.2 3541590 3904.0 05:10:22.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:22.948 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:23.727 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:23.727 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:27.562 INFO ProgressMeter - NC_035787.1:44625756 907.4 3542580 3904.3 05:10:31.356 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:32.239 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:10:38.476 INFO ProgressMeter - NC_035787.1:44703708 907.5 3543030 3904.0 05:10:49.734 INFO ProgressMeter - NC_035787.1:44759127 907.7 3543420 3903.6 05:10:59.854 INFO ProgressMeter - NC_035787.1:44821511 907.9 3543890 3903.4 05:11:07.289 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:11:09.869 INFO ProgressMeter - NC_035787.1:44965777 908.1 3544650 3903.5 05:11:20.045 INFO ProgressMeter - NC_035787.1:45042452 908.2 3545100 3903.3 05:11:24.269 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:11:30.626 INFO ProgressMeter - NC_035787.1:45188906 908.4 3545970 3903.5 05:11:40.782 INFO ProgressMeter - NC_035787.1:45263489 908.6 3546370 3903.2 05:11:46.488 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:11:47.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:11:50.821 INFO ProgressMeter - NC_035787.1:45321381 908.7 3546730 3902.9 05:12:01.484 INFO ProgressMeter - NC_035787.1:45394175 908.9 3547280 3902.7 05:12:10.186 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:12:11.700 INFO ProgressMeter - NC_035787.1:45521307 909.1 3548170 3903.0 05:12:20.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:12:23.651 INFO ProgressMeter - NC_035787.1:45545533 909.3 3548360 3902.3 05:12:28.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:12:33.716 INFO ProgressMeter - NC_035787.1:45589568 909.5 3548700 3902.0 05:12:42.294 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:12:43.898 INFO ProgressMeter - NC_035787.1:45632187 909.6 3549060 3901.7 05:12:53.957 INFO ProgressMeter - NC_035787.1:45683941 909.8 3549480 3901.4 05:13:02.064 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:03.986 INFO ProgressMeter - NC_035787.1:45747489 910.0 3549990 3901.3 05:13:04.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:12.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:12.654 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:12.654 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:12.654 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:14.170 INFO ProgressMeter - NC_035787.1:45838446 910.1 3550500 3901.1 05:13:24.362 INFO ProgressMeter - NC_035787.1:45913984 910.3 3551080 3901.0 05:13:25.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:27.101 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:34.526 INFO ProgressMeter - NC_035787.1:45955364 910.5 3551400 3900.6 05:13:42.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:42.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:42.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:42.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:42.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:13:44.595 INFO ProgressMeter - NC_035787.1:46039867 910.6 3551980 3900.5 05:13:55.156 INFO ProgressMeter - NC_035787.1:46104779 910.8 3552480 3900.3 05:13:57.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:14:05.590 INFO ProgressMeter - NC_035787.1:46150187 911.0 3552820 3900.0 05:14:15.793 INFO ProgressMeter - NC_035787.1:46221710 911.2 3553370 3899.8 05:14:17.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:14:25.069 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:14:25.069 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:14:26.071 INFO ProgressMeter - NC_035787.1:46352825 911.3 3554060 3899.9 05:14:26.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:14:36.094 INFO ProgressMeter - NC_035787.1:46403233 911.5 3554350 3899.5 05:14:41.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:14:44.382 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:14:44.382 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:14:46.212 INFO ProgressMeter - NC_035787.1:46503099 911.7 3555130 3899.6 05:14:56.585 INFO ProgressMeter - NC_035787.1:46562388 911.8 3555570 3899.3 05:14:56.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:15:00.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:15:06.850 INFO ProgressMeter - NC_035787.1:46665166 912.0 3556310 3899.4 05:15:16.969 INFO ProgressMeter - NC_035787.1:46772818 912.2 3557120 3899.6 05:15:26.974 INFO ProgressMeter - NC_035787.1:46782597 912.3 3557180 3898.9 05:15:37.903 INFO ProgressMeter - NC_035787.1:46853814 912.5 3557700 3898.7 05:15:48.290 INFO ProgressMeter - NC_035787.1:46922927 912.7 3558220 3898.6 05:15:52.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:15:58.327 INFO ProgressMeter - NC_035787.1:47000495 912.9 3558770 3898.5 05:16:08.589 INFO ProgressMeter - NC_035787.1:47072083 913.0 3559230 3898.2 05:16:19.349 INFO ProgressMeter - NC_035787.1:47104204 913.2 3559450 3897.7 05:16:29.522 INFO ProgressMeter - NC_035787.1:47128336 913.4 3559580 3897.1 05:16:39.574 INFO ProgressMeter - NC_035787.1:47188954 913.6 3560030 3896.9 05:16:41.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:16:49.863 INFO ProgressMeter - NC_035787.1:47251278 913.7 3560490 3896.7 05:16:58.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:17:00.194 INFO ProgressMeter - NC_035787.1:47334216 913.9 3561050 3896.5 05:17:03.997 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:17:04.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:17:10.559 INFO ProgressMeter - NC_035787.1:47391082 914.1 3561390 3896.2 05:17:12.710 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:17:12.710 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:17:20.965 INFO ProgressMeter - NC_035787.1:47433792 914.2 3561670 3895.8 05:17:31.007 INFO ProgressMeter - NC_035787.1:47471595 914.4 3561970 3895.4 05:17:37.358 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:17:37.358 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:17:37.358 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:17:40.733 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:17:41.027 INFO ProgressMeter - NC_035787.1:47538642 914.6 3562430 3895.2 05:17:51.229 INFO ProgressMeter - NC_035787.1:47585521 914.7 3562770 3894.8 05:17:54.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:17:54.610 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:18:01.535 INFO ProgressMeter - NC_035787.1:47628679 914.9 3563090 3894.4 05:18:09.254 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:18:13.337 INFO ProgressMeter - NC_035787.1:47754627 915.1 3563760 3894.3 05:18:20.793 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:18:23.518 INFO ProgressMeter - NC_035787.1:47777850 915.3 3563900 3893.7 05:18:33.804 INFO ProgressMeter - NC_035787.1:47853602 915.5 3564430 3893.6 05:18:35.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:18:35.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:18:35.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:18:35.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:18:39.217 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:18:43.843 INFO ProgressMeter - NC_035787.1:48003808 915.6 3565420 3894.0 05:18:53.985 INFO ProgressMeter - NC_035787.1:48055162 915.8 3565830 3893.7 05:18:54.718 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:19:04.257 INFO ProgressMeter - NC_035787.1:48126345 916.0 3566260 3893.4 05:19:10.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:19:14.583 INFO ProgressMeter - NC_035787.1:48189626 916.1 3566730 3893.2 05:19:23.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:19:24.762 INFO ProgressMeter - NC_035787.1:48256086 916.3 3567190 3893.0 05:19:29.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:19:34.762 INFO ProgressMeter - NC_035787.1:48323315 916.5 3567660 3892.8 05:19:45.074 INFO ProgressMeter - NC_035787.1:48372260 916.6 3568070 3892.5 05:19:48.234 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:19:52.674 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:19:55.170 INFO ProgressMeter - NC_035787.1:48427435 916.8 3568520 3892.3 05:20:05.977 INFO ProgressMeter - NC_035787.1:48464393 917.0 3568820 3891.9 05:20:16.028 INFO ProgressMeter - NC_035787.1:48533478 917.2 3569240 3891.6 05:20:26.089 INFO ProgressMeter - NC_035787.1:48577580 917.3 3569560 3891.2 05:20:33.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:33.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:35.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:36.350 INFO ProgressMeter - NC_035787.1:48659967 917.5 3570120 3891.1 05:20:36.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:38.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:38.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:38.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:38.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:39.234 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:39.349 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:39.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:39.752 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:40.230 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:40.230 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:40.313 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:41.654 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:41.654 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:41.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:41.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:42.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:42.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:43.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:44.217 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:46.430 INFO ProgressMeter - NC_035787.1:48830629 917.7 3571280 3891.7 05:20:48.509 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:48.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:49.058 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:49.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:49.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:53.209 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:53.210 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:53.211 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:20:57.064 INFO ProgressMeter - NC_035787.1:48919464 917.8 3571910 3891.6 05:21:07.590 INFO ProgressMeter - NC_035787.1:48937299 918.0 3572040 3891.0 05:21:15.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:21:17.996 INFO ProgressMeter - NC_035787.1:48985969 918.2 3572350 3890.6 05:21:28.648 INFO ProgressMeter - NC_035787.1:49001751 918.4 3572470 3890.0 05:21:38.698 INFO ProgressMeter - NC_035787.1:49023741 918.5 3572610 3889.4 05:21:46.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:21:48.882 INFO ProgressMeter - NC_035787.1:49048706 918.7 3572780 3888.9 05:21:53.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:21:53.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:21:58.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:21:58.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:21:59.013 INFO ProgressMeter - NC_035787.1:49070989 918.9 3572940 3888.4 05:22:09.504 INFO ProgressMeter - NC_035787.1:49090646 919.1 3573080 3887.8 05:22:19.828 INFO ProgressMeter - NC_035787.1:49119791 919.2 3573280 3887.3 05:22:26.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:22:28.865 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:22:30.094 INFO ProgressMeter - NC_035787.1:49140580 919.4 3573430 3886.7 05:22:34.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:22:34.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:22:40.106 INFO ProgressMeter - NC_035787.1:49186992 919.6 3573790 3886.4 05:22:50.476 INFO ProgressMeter - NC_035787.1:49237877 919.7 3574160 3886.1 05:22:59.151 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:22:59.151 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:00.490 INFO ProgressMeter - NC_035787.1:49331479 919.9 3574710 3886.0 05:23:02.098 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:10.651 INFO ProgressMeter - NC_035787.1:49400480 920.1 3575240 3885.8 05:23:11.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:21.366 INFO ProgressMeter - NC_035787.1:49566173 920.3 3576170 3886.1 05:23:28.887 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:31.547 INFO ProgressMeter - NC_035787.1:49666000 920.4 3576740 3886.0 05:23:31.840 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:31.865 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:34.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:36.978 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:41.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:41.625 INFO ProgressMeter - NC_035787.1:49841699 920.6 3577730 3886.3 05:23:50.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:50.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:50.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:50.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:50.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:50.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:50.111 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:23:51.728 INFO ProgressMeter - NC_035787.1:49929718 920.8 3578410 3886.4 05:24:02.789 INFO ProgressMeter - NC_035787.1:49966806 920.9 3578680 3885.9 05:24:12.803 INFO ProgressMeter - NC_035787.1:50043953 921.1 3579190 3885.7 05:24:18.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:24:22.861 INFO ProgressMeter - NC_035787.1:50110415 921.3 3579680 3885.6 05:24:26.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:24:33.210 INFO ProgressMeter - NC_035787.1:50201684 921.4 3580250 3885.5 05:24:38.446 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:24:39.777 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:24:44.382 INFO ProgressMeter - NC_035787.1:50233390 921.6 3580460 3884.9 05:24:48.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:24:48.493 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:24:49.227 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:24:54.460 INFO ProgressMeter - NC_035787.1:50254077 921.8 3580600 3884.3 05:25:00.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:04.501 INFO ProgressMeter - NC_035787.1:50377550 922.0 3581340 3884.4 05:25:14.687 INFO ProgressMeter - NC_035787.1:50478677 922.1 3582050 3884.5 05:25:16.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:21.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:21.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:25.092 INFO ProgressMeter - NC_035787.1:50561298 922.3 3582600 3884.4 05:25:27.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:27.707 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:27.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:27.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:28.664 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:29.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:33.856 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:34.832 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:35.161 INFO ProgressMeter - NC_035787.1:50882725 922.5 3584090 3885.3 05:25:39.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:25:45.167 INFO ProgressMeter - NC_035787.1:50943459 922.6 3584550 3885.1 05:25:55.403 INFO ProgressMeter - NC_035787.1:51015028 922.8 3585070 3884.9 05:26:05.433 INFO ProgressMeter - NC_035787.1:51098337 923.0 3585650 3884.8 05:26:08.659 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:09.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:09.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:10.203 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:14.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:14.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:14.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:14.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:14.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:15.459 INFO ProgressMeter - NC_035787.1:51208923 923.2 3586420 3885.0 05:26:15.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:15.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:15.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:20.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:25.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:25.231 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:25.505 INFO ProgressMeter - NC_035787.1:51392590 923.3 3587430 3885.4 05:26:27.403 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:35.653 INFO ProgressMeter - NC_035787.1:51456135 923.5 3587920 3885.2 05:26:45.863 INFO ProgressMeter - NC_035787.1:51502021 923.7 3588280 3884.8 05:26:52.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:26:56.450 INFO ProgressMeter - NC_035787.1:51579366 923.8 3588840 3884.7 05:27:06.501 INFO ProgressMeter - NC_035787.1:51696050 924.0 3589520 3884.7 05:27:07.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:27:07.021 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:27:07.021 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:27:16.528 INFO ProgressMeter - NC_035787.1:51763736 924.2 3590040 3884.6 05:27:26.541 INFO ProgressMeter - NC_035787.1:51847602 924.3 3590670 3884.6 05:27:34.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:27:36.574 INFO ProgressMeter - NC_035787.1:51948890 924.5 3591430 3884.7 05:27:40.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:27:46.785 INFO ProgressMeter - NC_035787.1:52038283 924.7 3592050 3884.7 05:27:57.628 INFO ProgressMeter - NC_035787.1:52080667 924.9 3592380 3884.3 05:28:01.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:08.227 INFO ProgressMeter - NC_035787.1:52161438 925.0 3592970 3884.2 05:28:17.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:18.272 INFO ProgressMeter - NC_035787.1:52247079 925.2 3593570 3884.1 05:28:18.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:18.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:20.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:24.378 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:24.378 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:25.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:27.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:27.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:27.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:28.911 INFO ProgressMeter - NC_035787.1:52354716 925.4 3594250 3884.1 05:28:29.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:33.826 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:36.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:39.288 INFO ProgressMeter - NC_035787.1:52662451 925.6 3595950 3885.2 05:28:41.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:43.886 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:43.887 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:48.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:49.347 INFO ProgressMeter - NC_035787.1:52755829 925.7 3596590 3885.2 05:28:58.999 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:28:59.449 INFO ProgressMeter - NC_035787.1:52809934 925.9 3597030 3885.0 05:29:02.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:29:02.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:29:09.620 INFO ProgressMeter - NC_035787.1:52860756 926.1 3597400 3884.6 05:29:10.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:29:14.383 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:29:14.383 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:29:14.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:29:19.757 INFO ProgressMeter - NC_035787.1:52894330 926.2 3597640 3884.2 05:29:29.896 INFO ProgressMeter - NC_035787.1:52940681 926.4 3597990 3883.9 05:29:40.190 INFO ProgressMeter - NC_035787.1:53032872 926.6 3598750 3884.0 05:29:50.288 INFO ProgressMeter - NC_035787.1:53108716 926.7 3599250 3883.8 05:29:51.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:29:52.990 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:29:53.167 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:29:53.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:29:53.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:29:53.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:29:55.255 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:30:00.290 INFO ProgressMeter - NC_035787.1:53209089 926.9 3599880 3883.8 05:30:09.823 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:30:09.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:30:09.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:30:10.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:30:10.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:30:10.479 INFO ProgressMeter - NC_035787.1:53264427 927.1 3600220 3883.4 05:30:20.605 INFO ProgressMeter - NC_035787.1:53311472 927.2 3600560 3883.1 05:30:30.789 INFO ProgressMeter - NC_035787.1:53341126 927.4 3600780 3882.6 05:30:40.840 INFO ProgressMeter - NC_035787.1:53394170 927.6 3601180 3882.4 05:30:51.190 INFO ProgressMeter - NC_035787.1:53449301 927.7 3601610 3882.1 05:30:57.333 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:31:01.453 INFO ProgressMeter - NC_035787.1:53500883 927.9 3602010 3881.8 05:31:11.540 INFO ProgressMeter - NC_035787.1:53548803 928.1 3602360 3881.5 05:31:12.713 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:31:16.208 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:31:21.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:31:22.320 INFO ProgressMeter - NC_035787.1:53678539 928.3 3603200 3881.6 05:31:32.856 INFO ProgressMeter - NC_035787.1:53715392 928.4 3603480 3881.2 05:31:42.882 INFO ProgressMeter - NC_035787.1:53737780 928.6 3603650 3880.7 05:31:53.086 INFO ProgressMeter - NC_035787.1:53770418 928.8 3603910 3880.3 05:32:03.534 INFO ProgressMeter - NC_035787.1:53877111 929.0 3604660 3880.3 05:32:04.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:32:08.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:32:10.542 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:32:14.087 INFO ProgressMeter - NC_035787.1:53991438 929.1 3605520 3880.5 05:32:24.445 INFO ProgressMeter - NC_035787.1:54094035 929.3 3606350 3880.7 05:32:34.683 INFO ProgressMeter - NC_035787.1:54331316 929.5 3607680 3881.4 05:32:36.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:32:42.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:32:42.897 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:32:42.897 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:32:44.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:32:44.752 INFO ProgressMeter - NC_035787.1:54615149 929.6 3608970 3882.1 05:32:48.054 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:32:54.786 INFO ProgressMeter - NC_035787.1:54790504 929.8 3610080 3882.6 05:32:59.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:33:04.834 INFO ProgressMeter - NC_035787.1:54915959 930.0 3610830 3882.7 05:33:08.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:33:15.053 INFO ProgressMeter - NC_035787.1:55133210 930.1 3612250 3883.5 05:33:19.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:33:25.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:33:25.213 INFO ProgressMeter - NC_035787.1:55285604 930.3 3613190 3883.8 05:33:35.685 INFO ProgressMeter - NC_035787.1:55409122 930.5 3614020 3884.0 05:33:46.145 INFO ProgressMeter - NC_035787.1:55669880 930.7 3615620 3885.0 05:33:56.249 INFO ProgressMeter - NC_035787.1:55764783 930.8 3616330 3885.0 05:34:06.367 INFO ProgressMeter - NC_035787.1:55818961 931.0 3616720 3884.8 05:34:07.277 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:34:08.403 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:34:10.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:34:16.560 INFO ProgressMeter - NC_035787.1:55880765 931.2 3617210 3884.6 05:34:26.560 INFO ProgressMeter - NC_035787.1:55960767 931.3 3617800 3884.5 05:34:37.094 INFO ProgressMeter - NC_035787.1:56018552 931.5 3618240 3884.3 05:34:47.338 INFO ProgressMeter - NC_035787.1:56176066 931.7 3619220 3884.6 05:34:57.538 INFO ProgressMeter - NC_035787.1:56365224 931.9 3620690 3885.5 05:35:00.440 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:00.440 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:02.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:08.075 INFO ProgressMeter - NC_035787.1:56453934 932.0 3621350 3885.4 05:35:11.581 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:11.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:11.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:12.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:12.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:18.077 INFO ProgressMeter - NC_035787.1:56509828 932.2 3621730 3885.2 05:35:22.787 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:26.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:26.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:28.091 INFO ProgressMeter - NC_035787.1:56619709 932.4 3622390 3885.2 05:35:31.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:39.168 INFO ProgressMeter - NC_035787.1:56659715 932.5 3622720 3884.8 05:35:49.215 INFO ProgressMeter - NC_035787.1:56820135 932.7 3623750 3885.2 05:35:56.676 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:35:59.836 INFO ProgressMeter - NC_035787.1:56862651 932.9 3624030 3884.7 05:36:07.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:36:07.967 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:36:08.631 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:36:09.860 INFO ProgressMeter - NC_035787.1:57086235 933.1 3625340 3885.4 05:36:13.522 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:36:14.211 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:36:20.128 INFO ProgressMeter - NC_035787.1:57162189 933.2 3625890 3885.3 05:36:20.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:36:30.253 INFO ProgressMeter - NC_035787.1:57239692 933.4 3626460 3885.2 05:36:36.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:36:37.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:36:37.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:36:38.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:36:40.282 INFO ProgressMeter - NC_035787.1:57428695 933.6 3627640 3885.8 05:36:50.620 INFO ProgressMeter - NC_035787.1:57495876 933.7 3628130 3885.6 05:37:00.910 INFO ProgressMeter - NC_035787.1:57571258 933.9 3628630 3885.4 05:37:11.315 INFO ProgressMeter - NC_035787.1:57630836 934.1 3629010 3885.1 05:37:22.507 INFO ProgressMeter - NC_035787.1:57672618 934.3 3629330 3884.7 05:37:32.680 INFO ProgressMeter - NC_035787.1:57708973 934.4 3629620 3884.3 05:37:43.263 INFO ProgressMeter - NC_035787.1:57802630 934.6 3630370 3884.3 05:37:49.182 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:37:52.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:37:52.420 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:37:53.412 INFO ProgressMeter - NC_035787.1:57912636 934.8 3631150 3884.5 05:37:59.437 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:03.507 INFO ProgressMeter - NC_035787.1:58083806 935.0 3632220 3884.9 05:38:06.486 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:06.932 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:07.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:07.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:07.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:07.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:07.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:07.581 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:07.581 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:07.581 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:07.581 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:07.581 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:08.036 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:08.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:11.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:11.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:11.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:11.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:14.109 INFO ProgressMeter - NC_035787.1:58258566 935.1 3633200 3885.2 05:38:14.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:15.019 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:15.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:17.140 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:24.287 INFO ProgressMeter - NC_035787.1:58432543 935.3 3634090 3885.5 05:38:27.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:27.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:27.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:27.926 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:30.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:31.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:34.304 INFO ProgressMeter - NC_035787.1:58663506 935.5 3635420 3886.2 05:38:35.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:35.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:44.417 INFO ProgressMeter - NC_035787.1:58836933 935.6 3636570 3886.7 05:38:49.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:54.467 INFO ProgressMeter - NC_035787.1:58942091 935.8 3637290 3886.8 05:38:55.458 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:38:57.838 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:00.804 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:02.398 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:04.620 INFO ProgressMeter - NC_035787.1:59098178 936.0 3638360 3887.3 05:39:05.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:07.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:07.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:07.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:14.779 INFO ProgressMeter - NC_035787.1:59261989 936.1 3639380 3887.6 05:39:18.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:18.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:19.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:24.854 INFO ProgressMeter - NC_035787.1:59403627 936.3 3640330 3888.0 05:39:27.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:27.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:28.203 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:31.753 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:35.102 INFO ProgressMeter - NC_035787.1:59580915 936.5 3641520 3888.5 05:39:45.126 INFO ProgressMeter - NC_035787.1:59644288 936.6 3642030 3888.4 05:39:54.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:39:55.128 INFO ProgressMeter - NC_035787.1:59777597 936.8 3643030 3888.7 05:39:59.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:40:01.253 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:40:05.564 INFO ProgressMeter - NC_035787.1:59917528 937.0 3644130 3889.2 05:40:15.594 INFO ProgressMeter - NC_035787.1:60036278 937.2 3645060 3889.5 05:40:20.652 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:40:20.652 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:40:21.643 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:40:25.917 INFO ProgressMeter - NC_035787.1:60079660 937.3 3645400 3889.1 05:40:28.516 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:40:33.787 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:40:36.421 INFO ProgressMeter - NC_035787.1:60187955 937.5 3646120 3889.2 05:40:46.712 INFO ProgressMeter - NC_035787.1:60247876 937.7 3646640 3889.0 05:40:55.791 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:40:55.791 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:40:55.792 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:40:57.042 INFO ProgressMeter - NC_035787.1:60311077 937.8 3647150 3888.9 05:41:04.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:41:07.110 INFO ProgressMeter - NC_035787.1:60373166 938.0 3647640 3888.7 05:41:17.122 INFO ProgressMeter - NC_035787.1:60426188 938.2 3648060 3888.4 05:41:27.134 INFO ProgressMeter - NC_035787.1:60518731 938.3 3648800 3888.5 05:41:29.382 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:41:36.237 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:41:37.421 INFO ProgressMeter - NC_035787.1:60592758 938.5 3649380 3888.4 05:41:41.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:41:47.422 INFO ProgressMeter - NC_035787.1:60742444 938.7 3650540 3889.0 05:41:47.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:41:47.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:41:47.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:41:57.439 INFO ProgressMeter - NC_035787.1:60857285 938.9 3651460 3889.3 05:41:59.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:41:59.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:42:07.962 INFO ProgressMeter - NC_035787.1:60938346 939.0 3652130 3889.3 05:42:17.968 INFO ProgressMeter - NC_035787.1:60987930 939.2 3652550 3889.0 05:42:21.713 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:42:28.299 INFO ProgressMeter - NC_035787.1:61077628 939.4 3653270 3889.1 05:42:30.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:42:36.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:42:36.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:42:36.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:42:36.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:42:37.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:42:37.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:42:38.651 INFO ProgressMeter - NC_035787.1:61162479 939.5 3653870 3889.0 05:42:40.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:42:48.800 INFO ProgressMeter - NC_035787.1:61240811 939.7 3654530 3889.0 05:42:49.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:42:58.805 INFO ProgressMeter - NC_035787.1:61320046 939.9 3655090 3888.9 05:43:09.110 INFO ProgressMeter - NC_035787.1:61403391 940.0 3655780 3888.9 05:43:14.646 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:43:18.153 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:43:19.138 INFO ProgressMeter - NC_035787.1:61508591 940.2 3656620 3889.1 05:43:29.918 INFO ProgressMeter - NC_035787.1:61554625 940.4 3656980 3888.8 05:43:39.945 INFO ProgressMeter - NC_035787.1:61611269 940.6 3657390 3888.5 05:43:50.158 INFO ProgressMeter - NC_035787.1:61675029 940.7 3657900 3888.4 05:44:01.156 INFO ProgressMeter - NC_035787.1:61700033 940.9 3658100 3887.8 05:44:11.264 INFO ProgressMeter - NC_035787.1:61727388 941.1 3658320 3887.3 05:44:21.332 INFO ProgressMeter - NC_035787.1:61752588 941.3 3658510 3886.9 05:44:31.580 INFO ProgressMeter - NC_035787.1:61776375 941.4 3658680 3886.3 05:44:35.027 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:44:42.056 INFO ProgressMeter - NC_035787.1:61841334 941.6 3659140 3886.1 05:44:52.226 INFO ProgressMeter - NC_035787.1:61887851 941.8 3659510 3885.8 05:44:59.315 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:45:02.418 INFO ProgressMeter - NC_035787.1:61947877 941.9 3659960 3885.6 05:45:02.527 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:45:12.437 INFO ProgressMeter - NC_035787.1:62031581 942.1 3660580 3885.5 05:45:22.454 INFO ProgressMeter - NC_035787.1:62127431 942.3 3661110 3885.4 05:45:32.498 INFO ProgressMeter - NC_035787.1:62183295 942.4 3661530 3885.2 05:45:42.651 INFO ProgressMeter - NC_035787.1:62259796 942.6 3662080 3885.1 05:45:53.530 INFO ProgressMeter - NC_035787.1:62355136 942.8 3662770 3885.0 05:45:57.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:45:59.848 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:03.604 INFO ProgressMeter - NC_035787.1:62535233 943.0 3663900 3885.5 05:46:04.365 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:12.798 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:13.614 INFO ProgressMeter - NC_035787.1:62632636 943.1 3664580 3885.6 05:46:13.674 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:13.674 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:13.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:20.550 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:23.665 INFO ProgressMeter - NC_035787.1:62756929 943.3 3665550 3885.9 05:46:29.562 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:29.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:33.367 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:33.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:33.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:33.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:33.903 INFO ProgressMeter - NC_035787.1:62910803 943.5 3666690 3886.4 05:46:36.756 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:36.756 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:37.337 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:37.337 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:43.251 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:44.466 INFO ProgressMeter - NC_035787.1:63023344 943.6 3667460 3886.5 05:46:48.751 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:53.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:54.502 INFO ProgressMeter - NC_035787.1:63172533 943.8 3668460 3886.9 05:46:54.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:55.082 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:55.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:55.259 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:55.259 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:55.512 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:46:55.554 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:00.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:04.530 INFO ProgressMeter - NC_035787.1:63301858 944.0 3669310 3887.1 05:47:07.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:14.590 INFO ProgressMeter - NC_035787.1:63435492 944.1 3670410 3887.6 05:47:15.788 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:15.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:16.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:17.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:17.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:24.729 INFO ProgressMeter - NC_035787.1:63536809 944.3 3671230 3887.7 05:47:27.659 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:27.659 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:35.102 INFO ProgressMeter - NC_035787.1:63592560 944.5 3671620 3887.4 05:47:39.412 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:39.412 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:39.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:39.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:39.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:40.517 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:40.517 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:40.517 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:40.517 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:41.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:46.714 INFO ProgressMeter - NC_035787.1:63715872 944.7 3672460 3887.5 05:47:54.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:55.235 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:56.208 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:56.780 INFO ProgressMeter - NC_035787.1:63744173 944.8 3672650 3887.1 05:47:56.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:47:56.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:48:06.911 INFO ProgressMeter - NC_035787.1:63836995 945.0 3673290 3887.0 05:48:07.745 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:48:07.745 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:48:11.480 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:48:13.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:48:17.911 INFO ProgressMeter - NC_035787.1:63955362 945.2 3674100 3887.1 05:48:26.635 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:48:28.192 INFO ProgressMeter - NC_035787.1:64029403 945.4 3674570 3886.9 05:48:31.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:48:38.215 INFO ProgressMeter - NC_035787.1:64125779 945.5 3675140 3886.8 05:48:38.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:48:38.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:48:38.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:48:38.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:48:48.423 INFO ProgressMeter - NC_035787.1:64190989 945.7 3675620 3886.7 05:48:52.401 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:48:59.267 INFO ProgressMeter - NC_035787.1:64256224 945.9 3676110 3886.4 05:49:10.424 INFO ProgressMeter - NC_035787.1:64327416 946.1 3676670 3886.3 05:49:20.471 INFO ProgressMeter - NC_035787.1:64414652 946.2 3677320 3886.3 05:49:20.478 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:49:20.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:49:20.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:49:20.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:49:27.197 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:49:27.197 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:49:27.197 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:49:27.197 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:49:27.197 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:49:30.318 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:49:30.523 INFO ProgressMeter - NC_035787.1:64493701 946.4 3677900 3886.2 05:49:41.141 INFO ProgressMeter - NC_035787.1:64569059 946.6 3678430 3886.0 05:49:41.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:49:41.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:49:51.245 INFO ProgressMeter - NC_035787.1:64678051 946.7 3679110 3886.0 05:50:01.581 INFO ProgressMeter - NC_035787.1:64726076 946.9 3679440 3885.7 05:50:03.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:50:03.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:50:08.235 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:50:11.604 INFO ProgressMeter - NC_035787.1:64805766 947.1 3679910 3885.5 05:50:12.278 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:50:12.278 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:50:20.800 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:50:22.781 INFO ProgressMeter - NC_035787.1:64878439 947.3 3680400 3885.2 05:50:32.935 INFO ProgressMeter - NC_035787.1:64945035 947.4 3680890 3885.1 05:50:33.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:50:33.468 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:50:33.700 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:50:39.185 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:50:43.331 INFO ProgressMeter - NC_035787.1:65037069 947.6 3681500 3885.0 05:50:44.052 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:50:54.338 INFO ProgressMeter - NC_035787.1:65126627 947.8 3682100 3884.9 05:51:01.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:01.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:01.343 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:01.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:04.353 INFO ProgressMeter - NC_035787.1:65185290 948.0 3682520 3884.6 05:51:07.560 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:14.585 INFO ProgressMeter - NC_035787.1:65232697 948.1 3682880 3884.3 05:51:16.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:24.774 INFO ProgressMeter - NC_035787.1:65438541 948.3 3684330 3885.2 05:51:34.846 INFO ProgressMeter - NC_035787.1:65656956 948.5 3685730 3885.9 05:51:39.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:45.497 INFO ProgressMeter - NC_035787.1:65848582 948.7 3686950 3886.5 05:51:46.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:46.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:46.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:46.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:47.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:47.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:47.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:51:56.149 INFO ProgressMeter - NC_035787.1:65904245 948.8 3687300 3886.1 05:52:05.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:05.426 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:06.160 INFO ProgressMeter - NC_035787.1:66027441 949.0 3688080 3886.3 05:52:06.840 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:07.756 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:07.756 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:08.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:09.887 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:09.887 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:13.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:13.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:16.222 INFO ProgressMeter - NC_035787.1:66219269 949.2 3689320 3886.9 05:52:16.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:16.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:26.584 INFO ProgressMeter - NC_035787.1:66318070 949.3 3690010 3886.9 05:52:27.477 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:27.478 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:29.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:29.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:31.534 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:31.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:32.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:32.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:33.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:33.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:33.736 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:36.777 INFO ProgressMeter - NC_035787.1:66509920 949.5 3690990 3887.3 05:52:37.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:46.856 INFO ProgressMeter - NC_035787.1:66701112 949.7 3692140 3887.8 05:52:50.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:50.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:52.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:53.738 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:52:57.535 INFO ProgressMeter - NC_035787.1:66894450 949.9 3693350 3888.3 05:53:08.222 INFO ProgressMeter - NC_035787.1:67000278 950.0 3694080 3888.4 05:53:13.263 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:16.901 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:16.901 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:17.241 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:17.242 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:18.825 INFO ProgressMeter - NC_035787.1:67157417 950.2 3695030 3888.6 05:53:19.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:21.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:24.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:24.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:24.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:24.444 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:24.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:28.954 INFO ProgressMeter - NC_035787.1:67331327 950.4 3695910 3888.9 05:53:39.151 INFO ProgressMeter - NC_035787.1:67479638 950.5 3696900 3889.2 05:53:42.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:53:49.476 INFO ProgressMeter - NC_035787.1:67523172 950.7 3697230 3888.9 05:53:59.494 INFO ProgressMeter - NC_035787.1:67693597 950.9 3698210 3889.2 05:53:59.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:54:03.900 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:54:09.498 INFO ProgressMeter - NC_035787.1:67839297 951.1 3699220 3889.6 05:54:19.582 INFO ProgressMeter - NC_035787.1:67928907 951.2 3699810 3889.5 05:54:21.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:54:22.990 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:54:29.676 INFO ProgressMeter - NC_035787.1:68161147 951.4 3701160 3890.3 05:54:30.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:54:39.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:54:39.543 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:54:39.544 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:54:39.643 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:54:39.691 INFO ProgressMeter - NC_035787.1:68282283 951.6 3701940 3890.4 05:54:49.102 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:54:49.692 INFO ProgressMeter - NC_035787.1:68545690 951.7 3703560 3891.4 05:54:59.697 INFO ProgressMeter - NC_035787.1:68666901 951.9 3704310 3891.5 05:55:03.643 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:55:07.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:55:09.705 INFO ProgressMeter - NC_035787.1:68830165 952.1 3705290 3891.9 05:55:16.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:55:16.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:55:19.762 INFO ProgressMeter - NC_035787.1:68928607 952.2 3705850 3891.8 05:55:19.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:55:22.203 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:55:24.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:55:29.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:55:29.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:55:29.791 INFO ProgressMeter - NC_035787.1:69115806 952.4 3707170 3892.5 05:55:34.402 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:55:39.798 INFO ProgressMeter - NC_035787.1:69313537 952.6 3708520 3893.2 05:55:50.090 INFO ProgressMeter - NC_035787.1:69556270 952.7 3709820 3893.9 05:56:00.186 INFO ProgressMeter - NC_035787.1:69680833 952.9 3710550 3894.0 05:56:04.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:56:10.414 INFO ProgressMeter - NC_035787.1:69861015 953.1 3711770 3894.5 05:56:15.631 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:56:20.325 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:56:20.424 INFO ProgressMeter - NC_035787.1:70069525 953.2 3712980 3895.1 05:56:21.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:56:21.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:56:21.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:56:21.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:56:21.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:56:23.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:56:30.430 INFO ProgressMeter - NC_035787.1:70231178 953.4 3714000 3895.5 05:56:32.728 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:56:40.453 INFO ProgressMeter - NC_035787.1:70402701 953.6 3714940 3895.8 05:56:44.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:56:50.493 INFO ProgressMeter - NC_035787.1:70570851 953.7 3716030 3896.3 05:56:52.986 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:00.636 INFO ProgressMeter - NC_035787.1:70681809 953.9 3716830 3896.4 05:57:07.492 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:11.151 INFO ProgressMeter - NC_035787.1:70744524 954.1 3717300 3896.2 05:57:12.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:15.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:16.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:17.493 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:21.356 INFO ProgressMeter - NC_035787.1:70925772 954.3 3718520 3896.8 05:57:28.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:31.213 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:31.213 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:31.397 INFO ProgressMeter - NC_035787.1:71219472 954.4 3719930 3897.6 05:57:35.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:35.257 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:38.754 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:41.522 INFO ProgressMeter - NC_035787.1:71494025 954.6 3721310 3898.3 05:57:45.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:46.266 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:46.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:51.881 INFO ProgressMeter - NC_035787.1:71656031 954.8 3722450 3898.8 05:57:52.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:57:57.532 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:01.905 INFO ProgressMeter - NC_035787.1:71853939 954.9 3723730 3899.5 05:58:03.965 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:06.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:06.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:06.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:06.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:11.147 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:12.137 INFO ProgressMeter - NC_035787.1:72074562 955.1 3725150 3900.3 05:58:15.527 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:16.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:16.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:18.406 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:21.468 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:22.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:22.309 INFO ProgressMeter - NC_035787.1:72261404 955.3 3726240 3900.7 05:58:22.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:23.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:32.318 INFO ProgressMeter - NC_035787.1:72366032 955.4 3727070 3900.9 05:58:34.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:34.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:42.434 INFO ProgressMeter - NC_035787.1:72483751 955.6 3727830 3901.0 05:58:43.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:50.401 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:58:52.601 INFO ProgressMeter - NC_035787.1:72625212 955.8 3728670 3901.2 05:58:54.786 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:02.875 INFO ProgressMeter - NC_035787.1:72685114 955.9 3729120 3901.0 05:59:11.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:11.667 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:12.022 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:13.248 INFO ProgressMeter - NC_035787.1:72853432 956.1 3730160 3901.4 05:59:13.400 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:16.351 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:16.351 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:16.351 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:17.428 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:17.428 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:17.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:17.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:17.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:17.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:17.430 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:17.430 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:17.430 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:25.489 INFO ProgressMeter - NC_035787.1:73055087 956.3 3731330 3901.8 05:59:32.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:34.519 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:34.519 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:35.141 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:35.587 INFO ProgressMeter - NC_035787.1:73335682 956.5 3733210 3903.0 05:59:35.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:40.727 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:40.727 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:40.727 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 05:59:45.686 INFO ProgressMeter - NC_035787.1:73547283 956.7 3734220 3903.4 05:59:56.001 INFO ProgressMeter - NC_035787.1:73693094 956.8 3735040 3903.6 05:59:59.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:06.003 INFO ProgressMeter - NC_035787.1:73797455 957.0 3735680 3903.5 06:00:08.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:16.177 INFO ProgressMeter - NC_035787.1:73990211 957.2 3736960 3904.2 06:00:19.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:19.347 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:22.274 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:22.275 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:26.835 INFO ProgressMeter - NC_035787.1:74265595 957.3 3738460 3905.0 06:00:28.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:36.868 INFO ProgressMeter - NC_035787.1:74343586 957.5 3738950 3904.9 06:00:42.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:42.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:42.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:43.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:43.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:44.631 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:44.987 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:45.027 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:45.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:45.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:45.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:45.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:46.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:00:47.288 INFO ProgressMeter - NC_035787.1:74723173 957.7 3740920 3906.2 06:00:57.470 INFO ProgressMeter - NC_035787.1:74847231 957.9 3741730 3906.4 06:01:06.421 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:07.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:07.488 INFO ProgressMeter - NC_035787.1:74984103 958.0 3742550 3906.5 06:01:07.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:13.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:13.151 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:17.552 INFO ProgressMeter - NC_035787.1:75195087 958.2 3743880 3907.2 06:01:27.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:27.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:28.707 INFO ProgressMeter - NC_035787.1:75467656 958.4 3745480 3908.2 06:01:31.414 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:31.492 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:31.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:32.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:38.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:38.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:38.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:38.718 INFO ProgressMeter - NC_035787.1:75651865 958.5 3746420 3908.5 06:01:44.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:44.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:44.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:44.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:44.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:44.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:44.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:44.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:44.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:44.943 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:45.828 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:49.499 INFO ProgressMeter - NC_035787.1:75851854 958.7 3747550 3908.9 06:01:49.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:55.676 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:55.860 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:55.860 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:55.860 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:55.860 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:58.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:58.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:59.219 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:01:59.945 INFO ProgressMeter - NC_035788.1:136993 958.9 3748900 3909.6 06:02:09.996 INFO ProgressMeter - NC_035788.1:309295 959.1 3749940 3910.0 06:02:10.026 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:10.027 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:10.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:11.188 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:20.360 INFO ProgressMeter - NC_035788.1:571273 959.2 3751490 3910.9 06:02:30.691 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:32.882 INFO ProgressMeter - NC_035788.1:785884 959.4 3752840 3911.5 06:02:35.533 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:38.567 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:42.889 INFO ProgressMeter - NC_035788.1:980596 959.6 3754060 3912.1 06:02:45.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:52.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:53.057 INFO ProgressMeter - NC_035788.1:1219408 959.8 3755490 3912.9 06:02:54.309 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.309 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.397 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.467 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.467 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.467 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.467 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.468 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.468 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:54.468 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:56.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:56.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:56.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:59.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:02:59.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:03.067 INFO ProgressMeter - NC_035788.1:1451741 959.9 3756870 3913.6 06:03:13.205 INFO ProgressMeter - NC_035788.1:1669670 960.1 3758400 3914.5 06:03:22.469 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:23.272 INFO ProgressMeter - NC_035788.1:1840626 960.3 3759500 3915.0 06:03:25.550 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:25.550 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:27.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:27.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:33.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:33.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:34.284 INFO ProgressMeter - NC_035788.1:1974741 960.5 3760330 3915.1 06:03:34.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:35.276 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:36.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:41.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:41.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:41.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:41.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:41.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:41.492 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:44.291 INFO ProgressMeter - NC_035788.1:2214027 960.6 3761840 3916.0 06:03:45.286 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:46.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:51.274 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:03:54.319 INFO ProgressMeter - NC_035788.1:2512844 960.8 3763540 3917.1 06:03:55.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:04:04.345 INFO ProgressMeter - NC_035788.1:2705849 961.0 3764580 3917.5 06:04:05.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:04:14.410 INFO ProgressMeter - NC_035788.1:2852339 961.1 3765430 3917.7 06:04:25.017 INFO ProgressMeter - NC_035788.1:2938127 961.3 3765990 3917.6 06:04:29.251 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:04:36.033 INFO ProgressMeter - NC_035788.1:2971534 961.5 3766250 3917.1 06:04:36.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:04:36.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:04:43.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:04:46.086 INFO ProgressMeter - NC_035788.1:3024267 961.7 3766630 3916.8 06:04:51.468 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:04:51.468 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:04:56.279 INFO ProgressMeter - NC_035788.1:3169472 961.8 3767390 3916.9 06:05:06.625 INFO ProgressMeter - NC_035788.1:3236414 962.0 3767860 3916.7 06:05:16.927 INFO ProgressMeter - NC_035788.1:3270939 962.2 3768120 3916.2 06:05:20.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:20.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:20.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:23.482 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:27.038 INFO ProgressMeter - NC_035788.1:3397461 962.3 3768940 3916.4 06:05:29.710 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:30.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:30.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:30.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:37.095 INFO ProgressMeter - NC_035788.1:3524294 962.5 3769730 3916.5 06:05:40.744 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:40.872 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:42.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:44.072 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:47.123 INFO ProgressMeter - NC_035788.1:3696684 962.7 3770920 3917.1 06:05:52.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:05:57.494 INFO ProgressMeter - NC_035788.1:3858222 962.9 3771930 3917.4 06:06:07.030 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:06:08.147 INFO ProgressMeter - NC_035788.1:3965453 963.0 3772700 3917.5 06:06:15.774 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:06:18.201 INFO ProgressMeter - NC_035788.1:4038778 963.2 3773190 3917.4 06:06:28.744 INFO ProgressMeter - NC_035788.1:4276955 963.4 3774630 3918.1 06:06:36.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:06:38.815 INFO ProgressMeter - NC_035788.1:4392191 963.5 3775300 3918.1 06:06:39.373 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:06:46.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:06:46.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:06:46.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:06:46.667 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:06:47.805 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:06:47.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:06:48.844 INFO ProgressMeter - NC_035788.1:4743657 963.7 3776910 3919.1 06:06:51.100 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:07:00.122 INFO ProgressMeter - NC_035788.1:4835006 963.9 3777440 3918.9 06:07:10.460 INFO ProgressMeter - NC_035788.1:4843373 964.1 3777500 3918.3 06:07:21.095 INFO ProgressMeter - NC_035788.1:4851827 964.2 3777560 3917.6 06:07:32.102 INFO ProgressMeter - NC_035788.1:4868998 964.4 3777690 3917.0 06:07:42.585 INFO ProgressMeter - NC_035788.1:4879001 964.6 3777760 3916.4 06:07:53.302 INFO ProgressMeter - NC_035788.1:4907523 964.8 3777960 3915.9 06:08:03.305 INFO ProgressMeter - NC_035788.1:4971048 965.0 3778380 3915.6 06:08:08.450 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:13.484 INFO ProgressMeter - NC_035788.1:5033308 965.1 3778860 3915.4 06:08:23.595 INFO ProgressMeter - NC_035788.1:5145940 965.3 3779560 3915.5 06:08:28.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:33.789 INFO ProgressMeter - NC_035788.1:5248765 965.5 3780270 3915.5 06:08:39.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:41.443 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:43.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:43.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:43.886 INFO ProgressMeter - NC_035788.1:5450389 965.6 3781410 3916.0 06:08:44.365 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:47.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:47.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:47.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:47.761 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:47.761 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:47.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:47.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:49.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:49.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:49.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:08:54.456 INFO ProgressMeter - NC_035788.1:5608871 965.8 3782450 3916.4 06:09:02.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:05.164 INFO ProgressMeter - NC_035788.1:5877403 966.0 3783960 3917.2 06:09:06.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:06.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:06.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:11.568 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:15.864 INFO ProgressMeter - NC_035788.1:6042241 966.2 3785000 3917.6 06:09:16.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:16.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:17.339 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:18.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:18.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:18.997 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:23.394 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:25.637 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:26.100 INFO ProgressMeter - NC_035788.1:6154263 966.3 3785860 3917.8 06:09:26.518 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:28.114 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:30.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:36.170 INFO ProgressMeter - NC_035788.1:6529465 966.5 3787830 3919.1 06:09:41.667 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:44.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:46.334 INFO ProgressMeter - NC_035788.1:6605550 966.7 3788300 3918.9 06:09:48.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:48.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:56.597 INFO ProgressMeter - NC_035788.1:6751002 966.8 3789110 3919.1 06:09:57.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:57.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:09:58.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:00.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:02.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:07.043 INFO ProgressMeter - NC_035788.1:6982901 967.0 3790330 3919.6 06:10:07.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:09.333 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:17.100 INFO ProgressMeter - NC_035788.1:7066465 967.2 3790910 3919.5 06:10:23.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:23.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:23.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:24.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:27.120 INFO ProgressMeter - NC_035788.1:7170634 967.3 3791560 3919.5 06:10:37.204 INFO ProgressMeter - NC_035788.1:7379605 967.5 3792690 3920.0 06:10:39.020 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:39.876 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:40.019 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:40.647 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:40.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:40.892 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:45.051 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:47.306 INFO ProgressMeter - NC_035788.1:7629581 967.7 3794100 3920.8 06:10:50.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:55.947 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:56.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:57.661 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:10:57.662 INFO ProgressMeter - NC_035788.1:7847968 967.9 3795250 3921.3 06:11:03.027 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:04.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:04.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:04.772 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:06.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:06.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:07.743 INFO ProgressMeter - NC_035788.1:7968618 968.0 3795970 3921.4 06:11:18.023 INFO ProgressMeter - NC_035788.1:8070262 968.2 3796600 3921.3 06:11:18.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:18.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:18.549 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:18.607 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:21.857 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:22.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:26.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:27.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:27.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:27.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:27.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:27.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:28.040 INFO ProgressMeter - NC_035788.1:8254932 968.4 3797810 3921.9 06:11:30.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:32.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:32.986 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:32.986 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:38.040 INFO ProgressMeter - NC_035788.1:8432619 968.5 3799000 3922.4 06:11:42.848 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:42.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:45.950 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:46.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:48.060 INFO ProgressMeter - NC_035788.1:8597743 968.7 3800060 3922.9 06:11:49.795 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:55.160 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:56.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:11:58.874 INFO ProgressMeter - NC_035788.1:8713463 968.9 3800820 3922.9 06:12:01.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:02.129 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:02.129 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:03.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:03.780 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:05.209 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:05.210 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:06.876 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:06.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:06.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:08.878 INFO ProgressMeter - NC_035788.1:8926035 969.0 3802160 3923.6 06:12:17.466 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:17.763 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:19.655 INFO ProgressMeter - NC_035788.1:9320691 969.2 3804020 3924.8 06:12:22.101 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:22.254 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:24.021 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:28.419 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:29.844 INFO ProgressMeter - NC_035788.1:9624533 969.4 3805450 3925.6 06:12:30.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:31.534 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:32.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:38.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:38.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:38.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:40.068 INFO ProgressMeter - NC_035788.1:9796985 969.6 3806610 3926.1 06:12:45.277 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:50.078 INFO ProgressMeter - NC_035788.1:9864421 969.7 3807030 3925.9 06:12:55.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:55.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:55.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:55.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:12:55.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:00.125 INFO ProgressMeter - NC_035788.1:9996599 969.9 3807940 3926.1 06:13:01.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:01.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:01.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:10.326 INFO ProgressMeter - NC_035788.1:10056870 970.1 3808380 3925.9 06:13:20.609 INFO ProgressMeter - NC_035788.1:10172911 970.2 3809160 3926.0 06:13:21.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:21.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:24.335 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:24.642 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:24.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:24.743 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:24.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:25.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:25.647 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:25.648 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:27.598 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:27.598 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:29.556 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:29.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:29.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:30.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:30.632 INFO ProgressMeter - NC_035788.1:10479006 970.4 3810940 3927.2 06:13:40.683 INFO ProgressMeter - NC_035788.1:10727899 970.6 3812400 3928.0 06:13:46.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:50.637 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:13:50.746 INFO ProgressMeter - NC_035788.1:10913393 970.7 3813560 3928.5 06:14:01.751 INFO ProgressMeter - NC_035788.1:11081115 970.9 3814660 3928.9 06:14:11.897 INFO ProgressMeter - NC_035788.1:11178167 971.1 3815460 3929.0 06:14:21.773 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:14:22.005 INFO ProgressMeter - NC_035788.1:11265731 971.3 3816050 3929.0 06:14:31.803 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:14:33.580 INFO ProgressMeter - NC_035788.1:11357728 971.5 3816730 3928.9 06:14:35.623 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:14:39.774 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:14:39.774 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:14:43.639 INFO ProgressMeter - NC_035788.1:11484106 971.6 3817520 3929.0 06:14:47.326 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:14:48.027 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:14:53.756 INFO ProgressMeter - NC_035788.1:11537785 971.8 3817890 3928.7 06:15:02.334 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:15:02.832 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:15:04.349 INFO ProgressMeter - NC_035788.1:11587082 972.0 3818230 3928.3 06:15:10.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:15:12.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:15:12.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:15:14.374 INFO ProgressMeter - NC_035788.1:11750540 972.1 3819190 3928.7 06:15:20.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:15:23.533 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:15:24.382 INFO ProgressMeter - NC_035788.1:11785007 972.3 3819440 3928.2 06:15:31.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:15:32.236 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:15:32.236 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:15:34.568 INFO ProgressMeter - NC_035788.1:11871289 972.5 3820100 3928.2 06:15:44.811 INFO ProgressMeter - NC_035788.1:11970698 972.6 3820780 3928.2 06:15:44.861 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:15:54.820 INFO ProgressMeter - NC_035788.1:12067619 972.8 3821480 3928.3 06:16:04.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:16:05.039 INFO ProgressMeter - NC_035788.1:12144052 973.0 3822040 3928.2 06:16:07.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:16:14.383 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:16:15.083 INFO ProgressMeter - NC_035788.1:12318751 973.1 3822940 3928.4 06:16:17.288 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:16:20.947 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:16:25.215 INFO ProgressMeter - NC_035788.1:12418091 973.3 3823650 3928.5 06:16:31.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:16:31.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:16:31.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:16:31.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:16:35.297 INFO ProgressMeter - NC_035788.1:12534982 973.5 3824340 3928.5 06:16:44.412 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:16:45.685 INFO ProgressMeter - NC_035788.1:12615648 973.7 3824900 3928.4 06:16:55.701 INFO ProgressMeter - NC_035788.1:12707855 973.8 3825600 3928.4 06:16:56.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:17:02.001 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:17:06.041 INFO ProgressMeter - NC_035788.1:12902359 974.0 3826910 3929.1 06:17:11.950 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:17:13.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:17:13.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:17:13.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:17:16.453 INFO ProgressMeter - NC_035788.1:12967849 974.2 3827340 3928.8 06:17:22.009 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:17:23.364 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:17:23.365 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:17:24.891 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:17:26.777 INFO ProgressMeter - NC_035788.1:13064853 974.3 3827940 3928.7 06:17:36.832 INFO ProgressMeter - NC_035788.1:13168646 974.5 3828550 3928.7 06:17:38.849 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:17:46.866 INFO ProgressMeter - NC_035788.1:13252437 974.7 3829170 3928.7 06:17:57.109 INFO ProgressMeter - NC_035788.1:13433804 974.8 3830310 3929.1 06:18:00.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:02.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:08.465 INFO ProgressMeter - NC_035788.1:13595892 975.0 3831090 3929.2 06:18:17.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:19.065 INFO ProgressMeter - NC_035788.1:13613882 975.2 3831220 3928.6 06:18:22.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:23.489 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:23.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:23.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:23.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:28.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:28.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:29.071 INFO ProgressMeter - NC_035788.1:13797081 975.4 3832200 3928.9 06:18:29.885 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:29.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:33.521 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:33.600 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:34.332 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:35.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:39.103 INFO ProgressMeter - NC_035788.1:14205845 975.5 3834250 3930.4 06:18:41.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:41.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:41.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:41.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:41.906 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:49.112 INFO ProgressMeter - NC_035788.1:14471081 975.7 3835700 3931.2 06:18:50.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:50.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:51.096 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:52.550 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:18:59.834 INFO ProgressMeter - NC_035788.1:14688282 975.9 3836930 3931.7 06:19:01.444 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:19:04.733 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:19:04.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:19:04.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:19:09.834 INFO ProgressMeter - NC_035788.1:14889906 976.1 3838330 3932.5 06:19:12.328 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:19:13.803 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:19:15.548 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:19:19.841 INFO ProgressMeter - NC_035788.1:15204351 976.2 3840380 3933.9 06:19:30.169 INFO ProgressMeter - NC_035788.1:15306233 976.4 3841060 3933.9 06:19:40.507 INFO ProgressMeter - NC_035788.1:15359074 976.6 3841430 3933.6 06:19:41.072 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:19:43.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:19:50.650 INFO ProgressMeter - NC_035788.1:15533823 976.7 3842590 3934.1 06:19:53.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:19:53.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:19:55.632 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:19:59.656 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:00.758 INFO ProgressMeter - NC_035788.1:15630776 976.9 3843180 3934.0 06:20:05.242 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:11.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:11.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:11.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:11.927 INFO ProgressMeter - NC_035788.1:15673568 977.1 3843510 3933.6 06:20:18.452 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:18.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:18.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:18.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:18.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:18.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:18.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:18.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:18.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:18.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:19.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:20.246 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:21.966 INFO ProgressMeter - NC_035788.1:15813753 977.3 3844340 3933.8 06:20:24.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:20:32.049 INFO ProgressMeter - NC_035788.1:15999732 977.4 3845600 3934.4 06:20:42.370 INFO ProgressMeter - NC_035788.1:16096102 977.6 3846230 3934.4 06:20:52.423 INFO ProgressMeter - NC_035788.1:16150018 977.8 3846580 3934.0 06:21:00.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:00.792 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:01.099 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:02.712 INFO ProgressMeter - NC_035788.1:16315009 977.9 3847420 3934.2 06:21:07.827 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:08.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:12.735 INFO ProgressMeter - NC_035788.1:16453752 978.1 3848470 3934.6 06:21:12.848 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:12.848 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:18.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:18.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:22.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:23.465 INFO ProgressMeter - NC_035788.1:16531715 978.3 3848940 3934.4 06:21:33.634 INFO ProgressMeter - NC_035788.1:16633401 978.5 3849540 3934.3 06:21:35.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:35.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:35.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:43.655 INFO ProgressMeter - NC_035788.1:16800802 978.6 3850680 3934.8 06:21:44.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:44.908 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:46.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:52.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:52.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:21:53.689 INFO ProgressMeter - NC_035788.1:16931619 978.8 3851540 3935.0 06:21:57.108 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:04.088 INFO ProgressMeter - NC_035788.1:17084690 979.0 3852560 3935.3 06:22:08.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:08.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:09.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:09.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:14.293 INFO ProgressMeter - NC_035788.1:17243768 979.1 3853430 3935.5 06:22:17.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:17.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:18.947 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:18.947 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:18.947 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:20.431 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:24.388 INFO ProgressMeter - NC_035788.1:17359091 979.3 3854260 3935.7 06:22:34.485 INFO ProgressMeter - NC_035788.1:17469696 979.5 3854910 3935.7 06:22:35.792 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:41.967 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:41.967 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:43.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:44.811 INFO ProgressMeter - NC_035788.1:17553063 979.6 3855510 3935.6 06:22:54.955 INFO ProgressMeter - NC_035788.1:17787935 979.8 3856930 3936.4 06:22:55.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:22:55.197 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:04.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:04.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:04.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:04.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:04.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:05.166 INFO ProgressMeter - NC_035788.1:17909410 980.0 3857750 3936.6 06:23:10.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:10.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:16.165 INFO ProgressMeter - NC_035788.1:18044421 980.2 3858680 3936.8 06:23:18.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:18.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:26.341 INFO ProgressMeter - NC_035788.1:18232336 980.3 3859880 3937.3 06:23:29.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:36.583 INFO ProgressMeter - NC_035788.1:18303209 980.5 3860370 3937.1 06:23:42.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:42.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:42.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:42.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:42.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:47.631 INFO ProgressMeter - NC_035788.1:18372105 980.7 3860890 3936.9 06:23:55.155 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:23:58.365 INFO ProgressMeter - NC_035788.1:18404797 980.9 3861130 3936.4 06:24:07.024 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:24:09.020 INFO ProgressMeter - NC_035788.1:18445404 981.0 3861450 3936.1 06:24:18.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:24:19.060 INFO ProgressMeter - NC_035788.1:18490119 981.2 3861780 3935.7 06:24:27.429 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:24:29.285 INFO ProgressMeter - NC_035788.1:18555233 981.4 3862240 3935.5 06:24:29.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:24:41.255 INFO ProgressMeter - NC_035788.1:18631655 981.6 3862870 3935.3 06:24:51.403 INFO ProgressMeter - NC_035788.1:18682904 981.8 3863240 3935.0 06:24:51.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:24:51.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:25:01.665 INFO ProgressMeter - NC_035788.1:18766203 981.9 3863850 3935.0 06:25:01.822 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:25:11.686 INFO ProgressMeter - NC_035788.1:18800635 982.1 3864140 3934.6 06:25:22.141 INFO ProgressMeter - NC_035788.1:18856179 982.3 3864570 3934.3 06:25:28.933 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:25:32.542 INFO ProgressMeter - NC_035788.1:18906611 982.4 3864940 3934.0 06:25:42.956 INFO ProgressMeter - NC_035788.1:18968175 982.6 3865440 3933.8 06:25:53.280 INFO ProgressMeter - NC_035788.1:19013092 982.8 3865820 3933.5 06:26:03.345 INFO ProgressMeter - NC_035788.1:19060311 983.0 3866220 3933.3 06:26:14.283 INFO ProgressMeter - NC_035788.1:19154938 983.1 3867040 3933.4 06:26:18.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:18.377 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:18.377 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:18.791 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:18.791 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:20.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:20.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:21.300 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:24.612 INFO ProgressMeter - NC_035788.1:19294715 983.3 3867890 3933.6 06:26:26.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:29.047 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:29.047 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:29.921 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:30.714 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:34.681 INFO ProgressMeter - NC_035788.1:19565860 983.5 3869350 3934.4 06:26:34.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:36.664 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:36.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:36.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:44.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:44.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:45.473 INFO ProgressMeter - NC_035788.1:19694737 983.7 3870160 3934.5 06:26:51.124 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:55.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:26:55.603 INFO ProgressMeter - NC_035788.1:19871926 983.8 3871410 3935.1 06:27:02.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:05.952 INFO ProgressMeter - NC_035788.1:20068224 984.0 3872440 3935.4 06:27:09.558 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:09.558 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:09.558 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:10.891 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:14.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:16.367 INFO ProgressMeter - NC_035788.1:20503211 984.2 3874500 3936.8 06:27:25.011 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:26.471 INFO ProgressMeter - NC_035788.1:20581817 984.3 3875040 3936.7 06:27:27.430 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:27.430 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:27.430 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:27.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:36.846 INFO ProgressMeter - NC_035788.1:20707723 984.5 3875850 3936.8 06:27:37.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:39.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:43.418 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:46.861 INFO ProgressMeter - NC_035788.1:21053908 984.7 3877740 3938.1 06:27:49.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:49.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:49.185 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:49.185 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:49.186 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:49.186 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:52.474 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:27:56.993 INFO ProgressMeter - NC_035788.1:21271285 984.8 3879200 3938.9 06:28:01.589 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:28:02.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:28:03.215 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:28:05.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:28:07.128 INFO ProgressMeter - NC_035788.1:21432194 985.0 3880250 3939.3 06:28:18.494 INFO ProgressMeter - NC_035788.1:21481435 985.2 3880600 3938.9 06:28:28.702 INFO ProgressMeter - NC_035788.1:21586445 985.4 3881180 3938.8 06:28:38.725 INFO ProgressMeter - NC_035788.1:21657593 985.5 3881680 3938.6 06:28:48.807 INFO ProgressMeter - NC_035788.1:21757707 985.7 3882430 3938.7 06:28:49.829 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:28:49.858 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:28:59.285 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:28:59.669 INFO ProgressMeter - NC_035788.1:21833054 985.9 3883000 3938.6 06:29:00.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:29:10.606 INFO ProgressMeter - NC_035788.1:21877234 986.1 3883320 3938.2 06:29:20.725 INFO ProgressMeter - NC_035788.1:21988867 986.2 3884180 3938.4 06:29:27.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:29:30.859 INFO ProgressMeter - NC_035788.1:22068876 986.4 3884790 3938.3 06:29:32.846 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:29:32.847 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:29:35.292 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:29:43.130 INFO ProgressMeter - NC_035788.1:22271769 986.6 3885960 3938.7 06:29:45.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:29:53.130 INFO ProgressMeter - NC_035788.1:22355075 986.8 3886600 3938.7 06:29:55.116 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:29:58.216 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:29:59.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:29:59.196 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:29:59.196 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:00.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:03.426 INFO ProgressMeter - NC_035788.1:22456164 987.0 3887140 3938.5 06:30:04.331 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:13.446 INFO ProgressMeter - NC_035788.1:22569923 987.1 3887880 3938.6 06:30:16.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:22.392 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:23.455 INFO ProgressMeter - NC_035788.1:22806296 987.3 3889480 3939.6 06:30:24.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:24.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:33.516 INFO ProgressMeter - NC_035788.1:22986927 987.5 3890410 3939.8 06:30:34.997 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:39.102 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:39.201 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:40.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:46.130 INFO ProgressMeter - NC_035788.1:23094897 987.7 3891130 3939.7 06:30:50.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:52.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:52.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:52.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:52.955 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:52.955 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:52.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:30:56.155 INFO ProgressMeter - NC_035788.1:23249273 987.8 3892040 3940.0 06:30:57.242 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:06.023 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:06.172 INFO ProgressMeter - NC_035788.1:23344018 988.0 3892630 3939.9 06:31:07.793 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:07.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:07.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:07.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:07.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:07.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:07.894 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:07.894 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:07.894 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:08.940 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:08.940 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:08.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:16.631 INFO ProgressMeter - NC_035788.1:23446378 988.2 3893340 3939.9 06:31:18.967 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:26.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:27.266 INFO ProgressMeter - NC_035788.1:23549630 988.4 3893980 3939.9 06:31:37.329 INFO ProgressMeter - NC_035788.1:23718925 988.5 3894960 3940.2 06:31:45.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:46.254 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:47.459 INFO ProgressMeter - NC_035788.1:23882151 988.7 3895910 3940.5 06:31:51.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:51.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:31:57.739 INFO ProgressMeter - NC_035788.1:24002999 988.9 3896660 3940.6 06:31:58.440 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:00.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:00.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:01.666 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:06.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:08.135 INFO ProgressMeter - NC_035788.1:24214733 989.0 3897840 3941.1 06:32:08.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:10.863 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:18.254 INFO ProgressMeter - NC_035788.1:24319543 989.2 3898520 3941.1 06:32:28.410 INFO ProgressMeter - NC_035788.1:24462666 989.4 3899420 3941.3 06:32:38.477 INFO ProgressMeter - NC_035788.1:24560928 989.5 3899930 3941.2 06:32:39.160 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:39.201 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:39.414 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:41.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:48.483 INFO ProgressMeter - NC_035788.1:24758752 989.7 3901190 3941.8 06:32:48.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:55.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:32:58.958 INFO ProgressMeter - NC_035788.1:24938546 989.9 3902200 3942.1 06:32:59.389 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:00.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:01.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:01.088 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:01.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:03.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:09.358 INFO ProgressMeter - NC_035788.1:25214779 990.1 3903490 3942.7 06:33:19.395 INFO ProgressMeter - NC_035788.1:25449249 990.2 3904740 3943.3 06:33:23.019 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:26.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:27.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:27.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:29.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:29.438 INFO ProgressMeter - NC_035788.1:25612712 990.4 3905660 3943.6 06:33:30.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:30.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:35.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:35.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:37.437 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:37.437 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:38.075 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:38.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:39.477 INFO ProgressMeter - NC_035788.1:26021260 990.6 3907620 3944.9 06:33:50.969 INFO ProgressMeter - NC_035788.1:26074436 990.7 3907920 3944.4 06:33:59.496 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:33:59.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:34:01.090 INFO ProgressMeter - NC_035788.1:26221130 990.9 3908880 3944.7 06:34:08.571 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:34:11.105 INFO ProgressMeter - NC_035788.1:26409643 991.1 3909940 3945.1 06:34:17.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:34:21.378 INFO ProgressMeter - NC_035788.1:26717999 991.3 3911690 3946.2 06:34:24.983 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:34:24.983 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:34:31.579 INFO ProgressMeter - NC_035788.1:26833094 991.4 3912480 3946.3 06:34:36.345 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:34:42.374 INFO ProgressMeter - NC_035788.1:27117119 991.6 3913850 3947.0 06:34:52.527 INFO ProgressMeter - NC_035788.1:27272410 991.8 3914780 3947.3 06:34:54.634 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:35:02.308 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:35:02.800 INFO ProgressMeter - NC_035788.1:27339457 991.9 3915210 3947.0 06:35:07.601 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:35:08.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:35:08.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:35:13.442 INFO ProgressMeter - NC_035788.1:27413558 992.1 3915660 3946.8 06:35:16.857 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:35:19.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:35:19.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:35:24.099 INFO ProgressMeter - NC_035788.1:27444586 992.3 3915870 3946.3 06:35:31.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:35:34.411 INFO ProgressMeter - NC_035788.1:27501955 992.5 3916160 3945.9 06:35:41.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:35:41.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:35:44.898 INFO ProgressMeter - NC_035788.1:27592809 992.6 3916650 3945.7 06:35:54.934 INFO ProgressMeter - NC_035788.1:27632809 992.8 3916920 3945.3 06:36:04.710 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:07.475 INFO ProgressMeter - NC_035788.1:27657001 993.0 3917070 3944.6 06:36:07.890 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:17.428 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:17.428 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:17.428 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:17.498 INFO ProgressMeter - NC_035788.1:27724999 993.2 3917540 3944.4 06:36:19.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:21.318 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:24.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:24.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:24.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:24.978 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:27.582 INFO ProgressMeter - NC_035788.1:28033640 993.4 3919310 3945.5 06:36:28.317 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:37.944 INFO ProgressMeter - NC_035788.1:28372980 993.5 3920920 3946.5 06:36:40.203 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:40.203 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:44.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:44.721 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:44.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:44.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:44.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:44.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:46.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:46.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:48.123 INFO ProgressMeter - NC_035788.1:28790666 993.7 3922890 3947.8 06:36:48.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:56.786 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:36:58.449 INFO ProgressMeter - NC_035788.1:28983287 993.9 3924050 3948.3 06:37:02.836 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:03.178 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:08.451 INFO ProgressMeter - NC_035788.1:29156399 994.0 3925180 3948.7 06:37:10.235 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:10.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:10.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:10.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:14.355 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:18.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:18.409 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:18.947 INFO ProgressMeter - NC_035788.1:29567876 994.2 3927170 3950.0 06:37:19.964 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:29.295 INFO ProgressMeter - NC_035788.1:29753356 994.4 3928040 3950.2 06:37:35.444 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:37.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:37.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:39.376 INFO ProgressMeter - NC_035788.1:30103054 994.6 3929760 3951.3 06:37:39.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:39.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:46.706 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:49.414 INFO ProgressMeter - NC_035788.1:30344112 994.7 3931320 3952.2 06:37:50.275 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:50.275 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:58.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:37:59.635 INFO ProgressMeter - NC_035788.1:30636597 994.9 3932930 3953.1 06:38:03.439 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:08.440 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:09.729 INFO ProgressMeter - NC_035788.1:30894705 995.1 3934390 3953.9 06:38:10.534 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:20.178 INFO ProgressMeter - NC_035788.1:30990590 995.2 3934960 3953.8 06:38:23.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:26.977 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:30.206 INFO ProgressMeter - NC_035788.1:31200232 995.4 3936100 3954.3 06:38:30.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:30.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:30.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:30.542 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:30.542 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:30.542 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:38.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:40.691 INFO ProgressMeter - NC_035788.1:31508565 995.6 3937790 3955.3 06:38:51.126 INFO ProgressMeter - NC_035788.1:31574593 995.7 3938260 3955.1 06:38:55.242 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:38:59.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:01.271 INFO ProgressMeter - NC_035788.1:31742485 995.9 3939330 3955.5 06:39:11.382 INFO ProgressMeter - NC_035788.1:31806290 996.1 3939760 3955.2 06:39:12.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:13.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:13.508 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:13.508 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:16.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:21.927 INFO ProgressMeter - NC_035788.1:32130936 996.3 3941300 3956.1 06:39:24.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:24.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:29.650 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:31.504 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:32.792 INFO ProgressMeter - NC_035788.1:32305285 996.4 3942340 3956.4 06:39:35.099 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:36.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:40.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:42.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:43.753 INFO ProgressMeter - NC_035788.1:32680371 996.6 3944170 3957.5 06:39:53.765 INFO ProgressMeter - NC_035788.1:32813097 996.8 3944880 3957.6 06:39:56.786 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:56.786 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:56.786 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:39:58.919 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:01.482 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:04.568 INFO ProgressMeter - NC_035788.1:32995073 997.0 3946040 3958.0 06:40:06.829 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:14.825 INFO ProgressMeter - NC_035788.1:33068923 997.1 3946510 3957.8 06:40:15.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:16.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:19.859 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:25.018 INFO ProgressMeter - NC_035788.1:33348634 997.3 3947880 3958.5 06:40:28.557 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:28.557 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:31.194 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:34.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:34.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:35.207 INFO ProgressMeter - NC_035788.1:33522997 997.5 3948880 3958.8 06:40:36.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:41.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:41.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:44.068 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:45.316 INFO ProgressMeter - NC_035788.1:33921995 997.7 3950860 3960.2 06:40:54.903 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:40:55.422 INFO ProgressMeter - NC_035788.1:34029634 997.8 3951410 3960.0 06:40:55.492 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:01.989 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:05.437 INFO ProgressMeter - NC_035788.1:34224770 998.0 3952570 3960.5 06:41:05.932 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:06.044 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:15.563 INFO ProgressMeter - NC_035788.1:34473478 998.2 3953940 3961.2 06:41:18.450 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:25.633 INFO ProgressMeter - NC_035788.1:34693109 998.3 3955160 3961.8 06:41:35.761 INFO ProgressMeter - NC_035788.1:34906342 998.5 3956230 3962.2 06:41:35.775 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:38.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:45.785 INFO ProgressMeter - NC_035788.1:34989402 998.7 3956870 3962.2 06:41:46.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:46.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:46.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:46.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:46.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:46.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:46.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:46.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:47.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:47.344 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:48.320 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:48.320 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:53.822 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:53.822 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:53.822 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:41:55.888 INFO ProgressMeter - NC_035788.1:35156172 998.8 3958080 3962.7 06:42:04.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:05.933 INFO ProgressMeter - NC_035788.1:35293683 999.0 3958990 3963.0 06:42:14.197 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:14.197 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:14.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:14.198 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:15.933 INFO ProgressMeter - NC_035788.1:35407802 999.2 3959650 3963.0 06:42:20.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:21.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:21.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:21.689 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:21.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:21.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:21.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:21.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:21.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:21.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:26.008 INFO ProgressMeter - NC_035788.1:35577314 999.3 3960660 3963.3 06:42:30.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:30.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:31.038 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:31.541 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:35.564 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:35.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:36.153 INFO ProgressMeter - NC_035788.1:35670210 999.5 3961290 3963.3 06:42:46.178 INFO ProgressMeter - NC_035788.1:36061781 999.7 3963330 3964.7 06:42:47.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:47.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:47.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:47.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:47.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:47.712 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:52.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:53.697 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:42:57.349 INFO ProgressMeter - NC_035788.1:36404228 999.9 3965240 3965.8 06:43:06.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:06.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:06.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:07.431 INFO ProgressMeter - NC_035788.1:36558618 1000.0 3966130 3966.1 06:43:12.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:17.711 INFO ProgressMeter - NC_035788.1:36742176 1000.2 3967290 3966.5 06:43:28.019 INFO ProgressMeter - NC_035788.1:36939644 1000.4 3968580 3967.1 06:43:29.449 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:33.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:35.492 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:35.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:38.174 INFO ProgressMeter - NC_035788.1:37221897 1000.5 3969950 3967.8 06:43:39.371 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:39.371 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:43.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:47.234 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:48.240 INFO ProgressMeter - NC_035788.1:37450862 1000.7 3971100 3968.3 06:43:54.480 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:58.464 INFO ProgressMeter - NC_035788.1:37645344 1000.9 3972380 3968.9 06:43:58.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:58.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:43:58.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:01.215 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:01.215 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:06.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:06.157 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:08.702 INFO ProgressMeter - NC_035788.1:38052311 1001.0 3974200 3970.1 06:44:13.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:14.332 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:15.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:18.758 INFO ProgressMeter - NC_035788.1:38317151 1001.2 3975610 3970.8 06:44:19.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:19.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:19.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:20.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:21.021 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:21.021 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:28.814 INFO ProgressMeter - NC_035788.1:38700998 1001.4 3977540 3972.1 06:44:30.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:30.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:30.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:31.087 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:32.683 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:33.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:38.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:38.864 INFO ProgressMeter - NC_035788.1:39012579 1001.5 3979250 3973.1 06:44:48.881 INFO ProgressMeter - NC_035788.1:39094998 1001.7 3979840 3973.0 06:44:54.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:55.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:55.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:55.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:55.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:55.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:55.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:55.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:55.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:55.709 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:44:59.369 INFO ProgressMeter - NC_035788.1:39215329 1001.9 3980610 3973.1 06:45:09.643 INFO ProgressMeter - NC_035788.1:39289060 1002.1 3981030 3972.9 06:45:19.691 INFO ProgressMeter - NC_035788.1:39419181 1002.2 3981850 3973.0 06:45:20.160 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:20.160 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:20.609 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:20.610 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:24.295 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:30.267 INFO ProgressMeter - NC_035788.1:39609780 1002.4 3983040 3973.5 06:45:33.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:34.232 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:36.613 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:36.613 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:38.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:40.542 INFO ProgressMeter - NC_035788.1:39745730 1002.6 3983930 3973.7 06:45:40.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:41.193 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:41.193 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:43.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:43.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:43.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:47.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:47.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:47.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:48.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:48.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:50.860 INFO ProgressMeter - NC_035788.1:39889561 1002.7 3984890 3974.0 06:45:52.404 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:56.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:56.807 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:45:57.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:00.961 INFO ProgressMeter - NC_035788.1:39989015 1002.9 3985620 3974.0 06:46:11.028 INFO ProgressMeter - NC_035788.1:40206805 1003.1 3986760 3974.5 06:46:14.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:14.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:14.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:14.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:14.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:14.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:14.950 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:14.988 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:17.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:17.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:17.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:17.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:17.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:21.177 INFO ProgressMeter - NC_035788.1:40302932 1003.2 3987430 3974.5 06:46:30.523 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:30.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:31.182 INFO ProgressMeter - NC_035788.1:40464964 1003.4 3988450 3974.9 06:46:34.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:42.815 INFO ProgressMeter - NC_035788.1:40600456 1003.6 3989350 3975.0 06:46:49.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:51.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:46:52.828 INFO ProgressMeter - NC_035788.1:40750275 1003.8 3990330 3975.3 06:46:58.631 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:47:03.671 INFO ProgressMeter - NC_035788.1:40793761 1004.0 3990640 3974.9 06:47:14.080 INFO ProgressMeter - NC_035788.1:40816375 1004.1 3990810 3974.4 06:47:16.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:47:17.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:47:18.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:47:24.233 INFO ProgressMeter - NC_035788.1:40851115 1004.3 3991060 3974.0 06:47:30.861 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:47:31.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:47:31.246 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:47:34.503 INFO ProgressMeter - NC_035788.1:40899752 1004.5 3991370 3973.6 06:47:36.087 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:47:36.144 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:47:37.878 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:47:44.904 INFO ProgressMeter - NC_035788.1:40947495 1004.6 3991720 3973.3 06:47:44.944 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:47:55.637 INFO ProgressMeter - NC_035788.1:41022333 1004.8 3992270 3973.1 06:48:05.650 INFO ProgressMeter - NC_035788.1:41068487 1005.0 3992620 3972.8 06:48:15.692 INFO ProgressMeter - NC_035788.1:41204464 1005.2 3993280 3972.8 06:48:26.074 INFO ProgressMeter - NC_035788.1:41295630 1005.3 3993880 3972.7 06:48:36.490 INFO ProgressMeter - NC_035788.1:41356525 1005.5 3994270 3972.4 06:48:42.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:48:46.818 INFO ProgressMeter - NC_035788.1:41382526 1005.7 3994440 3971.9 06:48:57.877 INFO ProgressMeter - NC_035788.1:41398838 1005.9 3994550 3971.3 06:49:08.385 INFO ProgressMeter - NC_035788.1:41456045 1006.0 3994900 3970.9 06:49:08.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:09.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:10.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:11.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:17.925 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:18.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:18.055 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:18.663 INFO ProgressMeter - NC_035788.1:41556323 1006.2 3995500 3970.9 06:49:29.205 INFO ProgressMeter - NC_035788.1:41668246 1006.4 3996110 3970.8 06:49:31.645 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:36.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:36.025 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:38.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:38.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:38.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:39.250 INFO ProgressMeter - NC_035788.1:41772922 1006.5 3996700 3970.7 06:49:45.646 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:49:49.308 INFO ProgressMeter - NC_035788.1:41873704 1006.7 3997400 3970.7 06:49:59.777 INFO ProgressMeter - NC_035788.1:41997282 1006.9 3998090 3970.7 06:50:03.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:04.944 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:09.875 INFO ProgressMeter - NC_035788.1:42042138 1007.1 3998390 3970.4 06:50:12.885 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:17.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:17.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:17.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:18.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:18.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:18.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:19.699 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:20.213 INFO ProgressMeter - NC_035788.1:42084595 1007.2 3998710 3970.0 06:50:20.330 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:23.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:23.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:23.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:50:30.526 INFO ProgressMeter - NC_035788.1:42130626 1007.4 3999030 3969.6 06:50:40.912 INFO ProgressMeter - NC_035788.1:42150336 1007.6 3999190 3969.1 06:50:52.143 INFO ProgressMeter - NC_035788.1:42167682 1007.8 3999310 3968.5 06:50:59.042 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:51:01.320 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:51:02.154 INFO ProgressMeter - NC_035788.1:42260191 1007.9 3999950 3968.5 06:51:15.360 INFO ProgressMeter - NC_035788.1:42333597 1008.2 4000420 3968.1 06:51:17.447 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:51:17.447 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:51:24.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:51:25.387 INFO ProgressMeter - NC_035788.1:42426974 1008.3 4000960 3968.0 06:51:35.769 INFO ProgressMeter - NC_035788.1:42440319 1008.5 4001060 3967.4 06:51:46.198 INFO ProgressMeter - NC_035788.1:42454622 1008.7 4001160 3966.8 06:51:52.282 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:51:53.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:51:53.179 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:51:58.845 INFO ProgressMeter - NC_035788.1:42475828 1008.9 4001320 3966.1 06:52:00.643 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:52:02.036 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:52:03.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:52:10.482 INFO ProgressMeter - NC_035788.1:42523138 1009.1 4001610 3965.6 06:52:15.460 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:52:20.753 INFO ProgressMeter - NC_035788.1:42543137 1009.2 4001750 3965.1 06:52:21.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:52:23.507 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:52:32.158 INFO ProgressMeter - NC_035788.1:42599391 1009.4 4002080 3964.7 06:52:42.962 INFO ProgressMeter - NC_035788.1:42628784 1009.6 4002260 3964.2 06:52:44.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:52:45.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:52:51.153 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:52:53.097 INFO ProgressMeter - NC_035788.1:42749652 1009.8 4003060 3964.3 06:52:57.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:52:57.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:52:59.154 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:53:03.350 INFO ProgressMeter - NC_035788.1:42994543 1010.0 4004410 3965.0 06:53:03.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:53:06.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:53:13.494 INFO ProgressMeter - NC_035788.1:43188810 1010.1 4005410 3965.3 06:53:13.850 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:53:23.546 INFO ProgressMeter - NC_035788.1:43371195 1010.3 4006570 3965.8 06:53:25.201 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:53:27.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:53:33.575 INFO ProgressMeter - NC_035788.1:43558939 1010.5 4007540 3966.1 06:53:44.632 INFO ProgressMeter - NC_035788.1:43601998 1010.6 4007810 3965.6 06:53:45.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:53:50.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:53:50.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:53:55.132 INFO ProgressMeter - NC_035788.1:43653664 1010.8 4008150 3965.3 06:53:56.557 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:54:06.275 INFO ProgressMeter - NC_035788.1:43691545 1011.0 4008410 3964.8 06:54:07.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:54:18.247 INFO ProgressMeter - NC_035788.1:43716106 1011.2 4008560 3964.2 06:54:19.448 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:54:19.449 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:54:29.129 INFO ProgressMeter - NC_035788.1:43762589 1011.4 4008860 3963.7 06:54:31.647 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:54:39.314 INFO ProgressMeter - NC_035788.1:43831678 1011.6 4009280 3963.5 06:54:43.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:54:44.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:54:44.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:54:49.703 INFO ProgressMeter - NC_035788.1:43870826 1011.7 4009540 3963.1 06:54:50.052 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:54:55.162 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:55:00.915 INFO ProgressMeter - NC_035788.1:43929132 1011.9 4009970 3962.8 06:55:11.804 INFO ProgressMeter - NC_035788.1:43967996 1012.1 4010230 3962.3 06:55:22.183 INFO ProgressMeter - NC_035788.1:43986509 1012.3 4010360 3961.8 06:55:29.877 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:55:29.877 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:55:32.337 INFO ProgressMeter - NC_035788.1:44106393 1012.4 4011080 3961.8 06:55:40.574 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:55:42.535 INFO ProgressMeter - NC_035788.1:44181573 1012.6 4011530 3961.6 06:55:46.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:55:46.518 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:55:47.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:55:52.633 INFO ProgressMeter - NC_035788.1:44482545 1012.8 4012970 3962.4 06:55:55.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:02.700 INFO ProgressMeter - NC_035788.1:44611499 1012.9 4013690 3962.4 06:56:07.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:07.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:07.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:07.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:07.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:07.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:13.144 INFO ProgressMeter - NC_035788.1:44694871 1013.1 4014240 3962.3 06:56:23.412 INFO ProgressMeter - NC_035788.1:44756177 1013.3 4014600 3962.0 06:56:23.980 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:23.992 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:26.987 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:27.356 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:33.486 INFO ProgressMeter - NC_035788.1:45039735 1013.5 4016090 3962.8 06:56:33.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:33.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:43.608 INFO ProgressMeter - NC_035788.1:45162554 1013.6 4016740 3962.8 06:56:51.704 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:56:53.673 INFO ProgressMeter - NC_035788.1:45191665 1013.8 4016930 3962.3 06:57:01.764 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:57:04.413 INFO ProgressMeter - NC_035788.1:45328176 1014.0 4017710 3962.4 06:57:06.610 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:57:09.213 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:57:14.457 INFO ProgressMeter - NC_035788.1:45374838 1014.1 4018020 3962.0 06:57:16.891 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:57:24.213 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:57:24.849 INFO ProgressMeter - NC_035788.1:45417432 1014.3 4018310 3961.6 06:57:26.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:57:26.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:57:35.066 INFO ProgressMeter - NC_035788.1:45534649 1014.5 4019060 3961.7 06:57:46.971 INFO ProgressMeter - NC_035788.1:45547747 1014.7 4019160 3961.0 06:57:57.899 INFO ProgressMeter - NC_035788.1:45565075 1014.9 4019280 3960.4 06:58:07.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:08.005 INFO ProgressMeter - NC_035788.1:45633812 1015.0 4019690 3960.2 06:58:11.586 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:16.304 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:16.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:16.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:16.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:17.855 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:18.009 INFO ProgressMeter - NC_035788.1:45808445 1015.2 4020580 3960.4 06:58:19.052 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:19.096 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:19.096 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:19.156 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:19.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:20.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:20.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:28.328 INFO ProgressMeter - NC_035788.1:45916384 1015.4 4021260 3960.4 06:58:38.351 INFO ProgressMeter - NC_035788.1:45982633 1015.5 4021720 3960.2 06:58:39.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:40.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:45.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:45.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:48.374 INFO ProgressMeter - NC_035788.1:46113929 1015.7 4022500 3960.3 06:58:49.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:58:58.675 INFO ProgressMeter - NC_035788.1:46184389 1015.9 4023000 3960.1 06:59:10.108 INFO ProgressMeter - NC_035788.1:46258675 1016.1 4023470 3959.9 06:59:11.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 06:59:20.696 INFO ProgressMeter - NC_035788.1:46282321 1016.2 4023630 3959.3 06:59:31.060 INFO ProgressMeter - NC_035788.1:46297900 1016.4 4023740 3958.8 06:59:41.488 INFO ProgressMeter - NC_035788.1:46314088 1016.6 4023850 3958.2 06:59:52.235 INFO ProgressMeter - NC_035788.1:46322717 1016.8 4023910 3957.6 07:00:02.436 INFO ProgressMeter - NC_035788.1:46341605 1016.9 4024040 3957.0 07:00:13.607 INFO ProgressMeter - NC_035788.1:46351435 1017.1 4024100 3956.4 07:00:15.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:00:25.614 INFO ProgressMeter - NC_035788.1:46382911 1017.3 4024300 3955.8 07:00:35.876 INFO ProgressMeter - NC_035788.1:46390757 1017.5 4024350 3955.2 07:00:41.963 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:00:41.963 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:00:45.972 INFO ProgressMeter - NC_035788.1:46482641 1017.7 4025090 3955.2 07:00:49.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:00:53.756 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:00:56.003 INFO ProgressMeter - NC_035788.1:46588691 1017.8 4025860 3955.3 07:00:57.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:00:59.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:03.186 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:03.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:06.228 INFO ProgressMeter - NC_035788.1:46762583 1018.0 4026760 3955.6 07:01:08.978 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:09.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:12.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:13.348 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:13.669 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:16.666 INFO ProgressMeter - NC_035788.1:46905265 1018.2 4027760 3955.9 07:01:26.256 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:26.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:26.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:26.479 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:26.740 INFO ProgressMeter - NC_035788.1:46965066 1018.3 4028140 3955.6 07:01:31.354 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:32.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:32.555 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:35.588 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:35.828 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:36.784 INFO ProgressMeter - NC_035788.1:47146813 1018.5 4029260 3956.0 07:01:37.295 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:37.295 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:39.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:40.248 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:41.115 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:41.756 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:42.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:42.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:42.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:44.316 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:46.438 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:46.814 INFO ProgressMeter - NC_035788.1:47321614 1018.7 4030410 3956.5 07:01:48.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:49.800 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:51.359 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:56.938 INFO ProgressMeter - NC_035788.1:47458813 1018.8 4031280 3956.7 07:01:59.127 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:01:59.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:02:03.779 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:02:07.212 INFO ProgressMeter - NC_035788.1:47601473 1019.0 4032280 3957.0 07:02:15.886 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:02:17.229 INFO ProgressMeter - NC_035788.1:47662866 1019.2 4032730 3956.8 07:02:20.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:02:24.947 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:02:25.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:02:27.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:02:27.240 INFO ProgressMeter - NC_035788.1:47796017 1019.3 4033610 3957.0 07:02:37.953 INFO ProgressMeter - NC_035788.1:47842040 1019.5 4033950 3956.7 07:02:38.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:02:47.006 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:02:47.006 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:02:48.463 INFO ProgressMeter - NC_035788.1:47923432 1019.7 4034520 3956.6 07:02:50.948 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:02:58.540 INFO ProgressMeter - NC_035788.1:47934991 1019.9 4034600 3956.0 07:02:59.695 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:02:59.696 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:02.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:02.730 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:02.743 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:10.302 INFO ProgressMeter - NC_035788.1:47960415 1020.1 4034770 3955.4 07:03:13.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:14.483 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:15.577 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:21.121 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:21.743 INFO ProgressMeter - NC_035788.1:47997156 1020.3 4035010 3954.9 07:03:21.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:25.714 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:29.091 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:29.091 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:29.092 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:29.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:33.129 INFO ProgressMeter - NC_035788.1:48220026 1020.4 4036250 3955.4 07:03:41.728 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:43.161 INFO ProgressMeter - NC_035788.1:48337784 1020.6 4036950 3955.4 07:03:43.617 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:43.617 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:43.617 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:43.617 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:43.617 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:50.446 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:50.446 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:03:53.801 INFO ProgressMeter - NC_035788.1:48458963 1020.8 4037610 3955.4 07:04:04.023 INFO ProgressMeter - NC_035788.1:48506772 1021.0 4037900 3955.0 07:04:14.382 INFO ProgressMeter - NC_035788.1:48556439 1021.1 4038230 3954.6 07:04:21.292 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:04:22.649 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:04:24.910 INFO ProgressMeter - NC_035788.1:48599435 1021.3 4038520 3954.3 07:04:28.066 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:04:31.522 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:04:35.163 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:04:35.181 INFO ProgressMeter - NC_035788.1:48692938 1021.5 4039020 3954.1 07:04:38.723 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:04:45.357 INFO ProgressMeter - NC_035788.1:48839301 1021.7 4039760 3954.1 07:04:55.377 INFO ProgressMeter - NC_035788.1:48910225 1021.8 4040280 3954.0 07:05:05.511 INFO ProgressMeter - NC_035788.1:49066933 1022.0 4041180 3954.2 07:05:09.356 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:05:10.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:05:11.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:05:13.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:05:13.618 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:05:15.660 INFO ProgressMeter - NC_035788.1:49253163 1022.2 4042280 3954.7 07:05:17.419 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:05:26.311 INFO ProgressMeter - NC_035788.1:49293685 1022.3 4042580 3954.3 07:05:35.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:05:35.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:05:36.317 INFO ProgressMeter - NC_035788.1:49372897 1022.5 4043060 3954.1 07:05:40.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:05:46.414 INFO ProgressMeter - NC_035788.1:49521252 1022.7 4043900 3954.3 07:05:56.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:05:56.127 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:05:56.274 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:05:56.746 INFO ProgressMeter - NC_035788.1:49637980 1022.8 4044610 3954.3 07:05:58.838 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:00.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:00.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:00.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:00.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:02.790 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:05.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:05.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:05.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:05.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:05.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:05.827 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:05.901 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:05.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:06.183 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:07.228 INFO ProgressMeter - NC_035788.1:49921703 1023.0 4046540 3955.5 07:06:17.242 INFO ProgressMeter - NC_035788.1:50026864 1023.2 4047260 3955.6 07:06:19.454 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:21.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:21.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:27.885 INFO ProgressMeter - NC_035788.1:50115761 1023.4 4047900 3955.5 07:06:27.912 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:37.896 INFO ProgressMeter - NC_035788.1:50273359 1023.5 4048900 3955.8 07:06:39.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:42.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:45.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:45.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:47.634 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:47.901 INFO ProgressMeter - NC_035788.1:50483291 1023.7 4049950 3956.2 07:06:49.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:49.631 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:06:58.742 INFO ProgressMeter - NC_035788.1:50755152 1023.9 4051280 3956.8 07:07:07.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:07.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:07.848 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:08.969 INFO ProgressMeter - NC_035788.1:50900451 1024.0 4051960 3956.8 07:07:13.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:18.629 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:19.090 INFO ProgressMeter - NC_035788.1:50969741 1024.2 4052450 3956.6 07:07:20.538 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:21.364 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:26.776 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:26.776 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:26.776 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:29.858 INFO ProgressMeter - NC_035788.1:51086783 1024.4 4053160 3956.6 07:07:29.947 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:29.962 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:29.963 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:38.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:07:40.331 INFO ProgressMeter - NC_035788.1:51247271 1024.6 4054180 3957.0 07:07:50.612 INFO ProgressMeter - NC_035788.1:51345071 1024.7 4054780 3956.9 07:08:00.804 INFO ProgressMeter - NC_035788.1:51431561 1024.9 4055420 3956.9 07:08:11.587 INFO ProgressMeter - NC_035788.1:51463299 1025.1 4055650 3956.4 07:08:22.117 INFO ProgressMeter - NC_035788.1:51533103 1025.3 4056140 3956.2 07:08:22.886 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:08:32.605 INFO ProgressMeter - NC_035788.1:51589125 1025.4 4056570 3955.9 07:08:41.928 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:08:42.818 INFO ProgressMeter - NC_035788.1:51666239 1025.6 4057090 3955.8 07:08:45.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:08:52.948 INFO ProgressMeter - NC_035788.1:51726291 1025.8 4057570 3955.6 07:09:01.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:09:03.026 INFO ProgressMeter - NC_035788.1:51776464 1025.9 4057970 3955.3 07:09:13.440 INFO ProgressMeter - NC_035788.1:51857268 1026.1 4058630 3955.3 07:09:23.695 INFO ProgressMeter - NC_035788.1:51930434 1026.3 4059190 3955.2 07:09:29.994 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:09:34.326 INFO ProgressMeter - NC_035788.1:51974868 1026.5 4059530 3954.9 07:09:37.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:09:39.400 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:09:44.329 INFO ProgressMeter - NC_035788.1:52045445 1026.6 4060100 3954.8 07:09:54.780 INFO ProgressMeter - NC_035788.1:52106022 1026.8 4060630 3954.6 07:10:00.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:04.933 INFO ProgressMeter - NC_035788.1:52174521 1027.0 4061140 3954.5 07:10:12.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:15.182 INFO ProgressMeter - NC_035788.1:52277246 1027.1 4061930 3954.6 07:10:16.388 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:24.997 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:25.186 INFO ProgressMeter - NC_035788.1:52451549 1027.3 4063240 3955.2 07:10:25.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:28.035 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:28.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:28.832 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:28.832 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:28.939 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:33.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:33.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:33.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:33.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:33.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:33.018 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:35.780 INFO ProgressMeter - NC_035788.1:52694087 1027.5 4064630 3955.9 07:10:41.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:45.862 INFO ProgressMeter - NC_035788.1:52892948 1027.7 4065810 3956.4 07:10:46.422 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:47.522 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:47.523 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:49.002 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:49.002 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:49.002 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:49.002 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:49.002 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:49.002 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:49.002 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:49.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:49.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:49.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:52.098 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:55.991 INFO ProgressMeter - NC_035788.1:53026887 1027.8 4066580 3956.5 07:10:57.154 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:57.154 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:10:57.644 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:11:06.031 INFO ProgressMeter - NC_035788.1:53128711 1028.0 4067200 3956.4 07:11:14.275 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:11:15.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:11:16.051 INFO ProgressMeter - NC_035788.1:53237347 1028.2 4067850 3956.4 07:11:19.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:11:24.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:11:26.421 INFO ProgressMeter - NC_035788.1:53290889 1028.3 4068210 3956.1 07:11:31.201 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:11:35.026 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:11:36.874 INFO ProgressMeter - NC_035788.1:53358981 1028.5 4068650 3955.9 07:11:37.791 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:11:43.607 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:11:44.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:11:47.632 INFO ProgressMeter - NC_035788.1:53487828 1028.7 4069340 3955.8 07:11:57.940 INFO ProgressMeter - NC_035788.1:53541305 1028.9 4069750 3955.6 07:12:07.941 INFO ProgressMeter - NC_035788.1:53689816 1029.0 4070510 3955.7 07:12:09.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:12:18.406 INFO ProgressMeter - NC_035788.1:53746967 1029.2 4070880 3955.4 07:12:21.073 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:12:21.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:12:28.412 INFO ProgressMeter - NC_035788.1:53945597 1029.4 4072050 3955.9 07:12:29.134 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:12:30.132 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:12:33.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:12:33.909 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:12:35.541 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:12:38.552 INFO ProgressMeter - NC_035788.1:54201738 1029.5 4073410 3956.5 07:12:41.264 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:12:48.593 INFO ProgressMeter - NC_035788.1:54279047 1029.7 4073990 3956.5 07:12:49.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:12:49.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:12:58.917 INFO ProgressMeter - NC_035788.1:54329035 1029.9 4074340 3956.1 07:13:03.775 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:05.746 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:05.746 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:07.048 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:07.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:09.598 INFO ProgressMeter - NC_035788.1:54463096 1030.1 4075100 3956.2 07:13:12.014 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:12.014 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:19.937 INFO ProgressMeter - NC_035788.1:54619246 1030.2 4076270 3956.7 07:13:30.047 INFO ProgressMeter - NC_035788.1:54640973 1030.4 4076440 3956.2 07:13:40.092 INFO ProgressMeter - NC_035788.1:54721532 1030.6 4076960 3956.0 07:13:43.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:43.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:43.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:43.741 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:48.894 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:49.639 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:49.710 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:49.711 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:50.213 INFO ProgressMeter - NC_035788.1:54822687 1030.7 4077610 3956.0 07:13:50.491 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:54.128 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:13:54.129 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:14:00.547 INFO ProgressMeter - NC_035788.1:54913207 1030.9 4078320 3956.1 07:14:02.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:14:07.894 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:14:10.560 INFO ProgressMeter - NC_035788.1:55083778 1031.1 4079160 3956.2 07:14:15.507 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:14:23.126 INFO ProgressMeter - NC_035788.1:55207915 1031.3 4079850 3956.1 07:14:24.275 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:14:33.645 INFO ProgressMeter - NC_035788.1:55274766 1031.5 4080320 3955.9 07:14:43.648 INFO ProgressMeter - NC_035788.1:55353709 1031.6 4080910 3955.8 07:14:53.999 INFO ProgressMeter - NC_035788.1:55419799 1031.8 4081400 3955.6 07:15:02.444 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:04.026 INFO ProgressMeter - NC_035788.1:55470122 1032.0 4081830 3955.4 07:15:07.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:11.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:11.540 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:11.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:15.059 INFO ProgressMeter - NC_035788.1:55617640 1032.1 4082560 3955.4 07:15:21.072 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:25.299 INFO ProgressMeter - NC_035788.1:55649424 1032.3 4082780 3955.0 07:15:26.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:34.345 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:35.384 INFO ProgressMeter - NC_035788.1:55745006 1032.5 4083410 3954.9 07:15:36.514 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:36.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:36.832 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:42.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:44.289 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:44.637 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:45.593 INFO ProgressMeter - NC_035788.1:55865177 1032.7 4084030 3954.9 07:15:48.445 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:48.552 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:52.044 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.486 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.487 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.590 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:53.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:56.374 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:15:56.375 INFO ProgressMeter - NC_035788.1:55937442 1032.8 4084460 3954.6 07:16:00.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:00.995 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:01.991 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:02.264 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:06.387 INFO ProgressMeter - NC_035788.1:56018563 1033.0 4084980 3954.5 07:16:06.534 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:14.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:14.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:16.455 INFO ProgressMeter - NC_035788.1:56057812 1033.2 4085270 3954.1 07:16:21.955 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:26.946 INFO ProgressMeter - NC_035788.1:56118929 1033.3 4085750 3953.9 07:16:32.408 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:34.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:35.017 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:37.017 INFO ProgressMeter - NC_035788.1:56199762 1033.5 4086380 3953.9 07:16:45.293 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:47.040 INFO ProgressMeter - NC_035788.1:56292005 1033.7 4087090 3953.9 07:16:53.594 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:54.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:54.594 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:54.594 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:54.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:54.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:54.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:54.597 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:16:57.706 INFO ProgressMeter - NC_035788.1:56424295 1033.9 4087850 3954.0 07:17:00.527 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:17:08.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:17:08.049 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:17:08.051 INFO ProgressMeter - NC_035788.1:56522994 1034.0 4088470 3953.9 07:17:08.171 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:17:08.171 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:17:17.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:17:17.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:17:18.084 INFO ProgressMeter - NC_035788.1:56584826 1034.2 4088860 3953.7 07:17:25.573 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:17:28.116 INFO ProgressMeter - NC_035788.1:56708450 1034.4 4089490 3953.6 07:17:32.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:17:33.390 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:17:38.343 INFO ProgressMeter - NC_035788.1:56886816 1034.5 4090320 3953.8 07:17:49.256 INFO ProgressMeter - NC_035788.1:56929172 1034.7 4090560 3953.3 07:17:59.589 INFO ProgressMeter - NC_035788.1:56985255 1034.9 4090980 3953.1 07:18:08.148 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:18:10.710 INFO ProgressMeter - NC_035788.1:57018231 1035.1 4091240 3952.6 07:18:20.764 INFO ProgressMeter - NC_035788.1:57054554 1035.2 4091490 3952.2 07:18:31.195 INFO ProgressMeter - NC_035788.1:57099077 1035.4 4091850 3951.9 07:18:31.772 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:18:36.209 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:18:41.417 INFO ProgressMeter - NC_035788.1:57169422 1035.6 4092440 3951.8 07:18:50.570 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:18:50.570 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:18:50.585 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:18:51.429 INFO ProgressMeter - NC_035788.1:57208762 1035.8 4092720 3951.4 07:18:58.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:18:58.527 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:19:01.578 INFO ProgressMeter - NC_035788.1:57290781 1035.9 4093330 3951.4 07:19:06.814 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:19:11.623 INFO ProgressMeter - NC_035788.1:57359257 1036.1 4093830 3951.2 07:19:16.490 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:19:18.484 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:19:22.089 INFO ProgressMeter - NC_035788.1:57468169 1036.3 4094590 3951.3 07:19:24.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:19:24.032 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:19:32.124 INFO ProgressMeter - NC_035788.1:57554653 1036.4 4095190 3951.2 07:19:42.130 INFO ProgressMeter - NC_035788.1:57630715 1036.6 4095810 3951.2 07:19:47.869 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:19:52.620 INFO ProgressMeter - NC_035788.1:57666267 1036.8 4096040 3950.8 07:20:02.623 INFO ProgressMeter - NC_035788.1:57744028 1036.9 4096600 3950.7 07:20:13.681 INFO ProgressMeter - NC_035788.1:57805383 1037.1 4097050 3950.4 07:20:24.061 INFO ProgressMeter - NC_035788.1:57830284 1037.3 4097230 3949.9 07:20:34.792 INFO ProgressMeter - NC_035788.1:57871792 1037.5 4097530 3949.5 07:20:36.355 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:20:45.363 INFO ProgressMeter - NC_035788.1:57894312 1037.7 4097690 3949.0 07:20:55.741 INFO ProgressMeter - NC_035788.1:57923104 1037.8 4097910 3948.6 07:20:59.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:20:59.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:20:59.059 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:20:59.901 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:01.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:01.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:01.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:01.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:01.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:06.202 INFO ProgressMeter - NC_035788.1:57950285 1038.0 4098100 3948.1 07:21:08.870 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:16.925 INFO ProgressMeter - NC_035788.1:57979245 1038.2 4098310 3947.6 07:21:25.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:25.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:27.177 INFO ProgressMeter - NC_035788.1:58023424 1038.3 4098600 3947.2 07:21:28.358 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:28.358 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:28.358 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:35.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:35.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:35.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:36.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:37.228 INFO ProgressMeter - NC_035788.1:58056476 1038.5 4098810 3946.8 07:21:40.116 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:21:48.542 INFO ProgressMeter - NC_035788.1:58089920 1038.7 4099040 3946.3 07:21:59.397 INFO ProgressMeter - NC_035788.1:58103590 1038.9 4099130 3945.7 07:22:10.177 INFO ProgressMeter - NC_035788.1:58146654 1039.1 4099410 3945.3 07:22:12.504 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:22:21.474 INFO ProgressMeter - NC_035788.1:58187452 1039.3 4099650 3944.8 07:22:25.229 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:22:30.263 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:22:30.263 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:22:31.677 INFO ProgressMeter - NC_035788.1:58220512 1039.4 4099880 3944.4 07:22:35.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:22:35.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:22:41.802 INFO ProgressMeter - NC_035788.1:58241517 1039.6 4100010 3943.9 07:22:46.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:22:46.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:22:52.055 INFO ProgressMeter - NC_035788.1:58285227 1039.8 4100290 3943.5 07:22:54.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:22:54.864 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:22:56.288 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:22:56.288 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:23:02.291 INFO ProgressMeter - NC_035788.1:58480359 1039.9 4101190 3943.7 07:23:04.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:23:04.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:23:04.715 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:23:04.943 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:23:12.331 INFO ProgressMeter - NC_035788.1:58658053 1040.1 4102250 3944.1 07:23:22.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:23:22.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:23:22.651 INFO ProgressMeter - NC_035788.1:58798400 1040.3 4103150 3944.3 07:23:22.657 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:23:33.870 INFO ProgressMeter - NC_035788.1:58942585 1040.5 4104230 3944.6 07:23:42.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:23:44.102 INFO ProgressMeter - NC_035788.1:58969217 1040.6 4104420 3944.2 07:23:46.404 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:23:48.999 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:23:54.120 INFO ProgressMeter - NC_035788.1:59042427 1040.8 4104940 3944.0 07:24:04.612 INFO ProgressMeter - NC_035788.1:59098279 1041.0 4105380 3943.8 07:24:14.767 INFO ProgressMeter - NC_035788.1:59141580 1041.1 4105690 3943.4 07:24:23.026 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:24:23.026 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:24:24.864 INFO ProgressMeter - NC_035788.1:59193123 1041.3 4106100 3943.2 07:24:31.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:24:35.456 INFO ProgressMeter - NC_035788.1:59220658 1041.5 4106270 3942.7 07:24:45.759 INFO ProgressMeter - NC_035788.1:59322710 1041.7 4106830 3942.6 07:24:55.863 INFO ProgressMeter - NC_035788.1:59405903 1041.8 4107430 3942.5 07:24:59.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:00.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:00.684 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:02.298 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:02.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:02.787 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:03.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:03.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:07.044 INFO ProgressMeter - NC_035788.1:59739941 1042.0 4109180 3943.5 07:25:08.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:09.060 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:11.554 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:11.903 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:17.047 INFO ProgressMeter - NC_035788.1:59902721 1042.2 4110020 3943.7 07:25:17.907 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:20.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:20.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:20.381 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:20.885 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:20.885 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:25.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:27.775 INFO ProgressMeter - NC_035788.1:60067528 1042.4 4110900 3943.8 07:25:29.069 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:29.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:29.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:29.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:35.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:35.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:35.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:35.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:35.937 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:35.938 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:36.303 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:36.303 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:36.303 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:36.303 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:38.346 INFO ProgressMeter - NC_035788.1:60150310 1042.5 4111540 3943.8 07:25:48.368 INFO ProgressMeter - NC_035788.1:60229437 1042.7 4112110 3943.7 07:25:52.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:52.983 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:52.983 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:57.855 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:25:58.412 INFO ProgressMeter - NC_035788.1:60331028 1042.9 4112750 3943.7 07:26:03.213 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:04.346 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:08.644 INFO ProgressMeter - NC_035788.1:60440928 1043.0 4113360 3943.6 07:26:12.336 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:18.753 INFO ProgressMeter - NC_035788.1:60519816 1043.2 4113910 3943.5 07:26:28.999 INFO ProgressMeter - NC_035788.1:60566858 1043.4 4114280 3943.2 07:26:34.905 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:36.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:39.753 INFO ProgressMeter - NC_035788.1:60619249 1043.6 4114670 3942.9 07:26:40.095 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:40.095 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:40.095 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:40.826 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:49.813 INFO ProgressMeter - NC_035788.1:60689112 1043.7 4115180 3942.8 07:26:57.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:57.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:59.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:59.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:59.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:26:59.816 INFO ProgressMeter - NC_035788.1:60829285 1043.9 4116020 3943.0 07:27:02.836 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:07.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:07.782 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:09.530 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:10.140 INFO ProgressMeter - NC_035788.1:61025320 1044.1 4117110 3943.3 07:27:14.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:14.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:15.019 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:20.824 INFO ProgressMeter - NC_035788.1:61206278 1044.2 4117950 3943.5 07:27:22.231 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:22.377 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:24.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:30.833 INFO ProgressMeter - NC_035788.1:61385674 1044.4 4118960 3943.8 07:27:30.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:31.278 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:31.278 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:41.086 INFO ProgressMeter - NC_035788.1:61466768 1044.6 4119550 3943.7 07:27:47.914 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:27:51.299 INFO ProgressMeter - NC_035788.1:61542487 1044.8 4120080 3943.6 07:28:02.319 INFO ProgressMeter - NC_035788.1:61760528 1044.9 4121130 3943.9 07:28:12.935 INFO ProgressMeter - NC_035788.1:61794482 1045.1 4121390 3943.5 07:28:23.118 INFO ProgressMeter - NC_035788.1:61831579 1045.3 4121670 3943.1 07:28:32.826 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:28:33.746 INFO ProgressMeter - NC_035788.1:61866860 1045.5 4121890 3942.7 07:28:44.875 INFO ProgressMeter - NC_035788.1:61893991 1045.6 4122080 3942.1 07:28:50.982 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:28:51.586 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:28:52.759 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:28:52.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:28:52.760 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:28:55.396 INFO ProgressMeter - NC_035788.1:61958194 1045.8 4122460 3941.8 07:28:55.573 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:28:55.573 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:28:56.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:29:05.787 INFO ProgressMeter - NC_035788.1:62016469 1046.0 4122840 3941.6 07:29:07.394 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:29:15.807 INFO ProgressMeter - NC_035788.1:62120805 1046.2 4123590 3941.6 07:29:16.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:29:16.280 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:29:16.280 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:29:19.478 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:29:25.899 INFO ProgressMeter - NC_035788.1:62211138 1046.3 4124230 3941.6 07:29:32.161 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:29:32.833 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:29:32.897 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:29:33.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:29:33.966 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:29:36.034 INFO ProgressMeter - NC_035788.1:62479326 1046.5 4125580 3942.3 07:29:46.322 INFO ProgressMeter - NC_035788.1:62553739 1046.7 4126230 3942.3 07:29:56.995 INFO ProgressMeter - NC_035788.1:62596811 1046.8 4126560 3941.9 07:30:07.009 INFO ProgressMeter - NC_035788.1:62635397 1047.0 4126860 3941.6 07:30:17.617 INFO ProgressMeter - NC_035788.1:62695697 1047.2 4127320 3941.3 07:30:28.014 INFO ProgressMeter - NC_035788.1:62761285 1047.4 4127780 3941.1 07:30:32.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:30:32.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:30:32.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:30:38.307 INFO ProgressMeter - NC_035788.1:62899198 1047.5 4128580 3941.2 07:30:46.714 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:30:48.513 INFO ProgressMeter - NC_035788.1:62967452 1047.7 4129030 3941.0 07:30:58.836 INFO ProgressMeter - NC_035788.1:63047577 1047.9 4129680 3941.0 07:31:08.793 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:31:08.794 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:31:08.794 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:31:08.794 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:31:08.794 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:31:09.227 INFO ProgressMeter - NC_035788.1:63080833 1048.0 4129910 3940.6 07:31:19.513 INFO ProgressMeter - NC_035788.1:63184352 1048.2 4130670 3940.6 07:31:29.890 INFO ProgressMeter - NC_035788.1:63314376 1048.4 4131690 3941.0 07:31:33.016 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:31:39.990 INFO ProgressMeter - NC_035788.1:63362803 1048.6 4132090 3940.7 07:31:50.004 INFO ProgressMeter - NC_035788.1:63427901 1048.7 4132590 3940.6 07:32:00.538 INFO ProgressMeter - NC_035788.1:63483532 1048.9 4132970 3940.3 07:32:06.882 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:32:10.857 INFO ProgressMeter - NC_035788.1:63607108 1049.1 4133780 3940.4 07:32:16.395 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:32:16.395 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:32:20.903 INFO ProgressMeter - NC_035788.1:63701057 1049.2 4134350 3940.3 07:32:28.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:32:28.599 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:32:31.213 INFO ProgressMeter - NC_035788.1:63797167 1049.4 4134970 3940.3 07:32:37.290 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:32:41.704 INFO ProgressMeter - NC_035788.1:63903646 1049.6 4135680 3940.3 07:32:51.782 INFO ProgressMeter - NC_035788.1:64003520 1049.8 4136460 3940.4 07:33:01.796 INFO ProgressMeter - NC_035788.1:64160341 1049.9 4137490 3940.7 07:33:11.835 INFO ProgressMeter - NC_035788.1:64253221 1050.1 4138050 3940.7 07:33:12.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:33:12.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:33:12.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:33:12.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:33:12.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:33:12.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:33:15.581 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:33:15.581 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:33:15.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:33:22.113 INFO ProgressMeter - NC_035788.1:64425071 1050.3 4139060 3941.0 07:33:26.148 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:33:32.361 INFO ProgressMeter - NC_035788.1:64477513 1050.4 4139430 3940.7 07:33:42.162 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:33:42.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:33:42.409 INFO ProgressMeter - NC_035788.1:64544574 1050.6 4139940 3940.5 07:33:52.726 INFO ProgressMeter - NC_035788.1:64639491 1050.8 4140640 3940.6 07:34:01.595 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:34:02.959 INFO ProgressMeter - NC_035788.1:64717011 1050.9 4141190 3940.4 07:34:03.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:34:04.712 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:34:13.266 INFO ProgressMeter - NC_035788.1:64840211 1051.1 4142170 3940.7 07:34:23.374 INFO ProgressMeter - NC_035788.1:64881437 1051.3 4142470 3940.4 07:34:33.398 INFO ProgressMeter - NC_035788.1:64939482 1051.5 4142880 3940.2 07:34:36.775 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:34:36.867 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:34:43.598 INFO ProgressMeter - NC_035788.1:65152231 1051.6 4144140 3940.7 07:34:52.298 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:34:52.298 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:34:54.252 INFO ProgressMeter - NC_035788.1:65376423 1051.8 4145280 3941.1 07:35:04.321 INFO ProgressMeter - NC_035788.1:65568423 1052.0 4146310 3941.5 07:35:12.728 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:35:14.439 INFO ProgressMeter - NC_035788.1:65634330 1052.1 4146750 3941.3 07:35:24.462 INFO ProgressMeter - NC_035788.1:65698281 1052.3 4147250 3941.1 07:35:34.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:35:34.822 INFO ProgressMeter - NC_035788.1:65782272 1052.5 4147930 3941.1 07:35:45.267 INFO ProgressMeter - NC_035788.1:65873845 1052.7 4148610 3941.1 07:35:47.173 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:35:55.297 INFO ProgressMeter - NC_035788.1:65954090 1052.8 4149160 3941.0 07:35:55.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:35:57.470 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:35:57.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:35:58.848 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:35:58.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:36:05.491 INFO ProgressMeter - NC_035788.1:66043130 1053.0 4149790 3941.0 07:36:13.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:36:15.544 INFO ProgressMeter - NC_035788.1:66090357 1053.2 4150170 3940.7 07:36:18.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:36:23.271 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:36:25.562 INFO ProgressMeter - NC_035788.1:66151240 1053.3 4150560 3940.4 07:36:33.726 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:36:36.002 INFO ProgressMeter - NC_035788.1:66256371 1053.5 4151270 3940.5 07:36:40.767 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:36:41.340 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:36:41.340 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:36:42.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:36:43.626 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:36:46.424 INFO ProgressMeter - NC_035788.1:66328350 1053.7 4151730 3940.3 07:36:57.030 INFO ProgressMeter - NC_035788.1:66347778 1053.8 4151860 3939.7 07:37:07.357 INFO ProgressMeter - NC_035788.1:66415246 1054.0 4152350 3939.5 07:37:17.486 INFO ProgressMeter - NC_035788.1:66493807 1054.2 4152900 3939.4 07:37:27.472 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:37:27.490 INFO ProgressMeter - NC_035788.1:66558635 1054.4 4153370 3939.3 07:37:27.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:37:29.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:37:29.781 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:37:37.504 INFO ProgressMeter - NC_035788.1:66623309 1054.5 4153840 3939.1 07:37:47.555 INFO ProgressMeter - NC_035788.1:66752775 1054.7 4154920 3939.5 07:37:57.904 INFO ProgressMeter - NC_035788.1:66836402 1054.9 4155510 3939.4 07:38:06.212 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:38:06.213 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:38:06.453 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:38:07.921 INFO ProgressMeter - NC_035788.1:66915195 1055.0 4156060 3939.3 07:38:15.363 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:38:18.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:38:18.190 INFO ProgressMeter - NC_035788.1:66986164 1055.2 4156550 3939.1 07:38:28.446 INFO ProgressMeter - NC_035788.1:67074831 1055.4 4157150 3939.0 07:38:34.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:38:38.514 INFO ProgressMeter - NC_035788.1:67117105 1055.5 4157460 3938.7 07:38:40.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:38:40.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:38:40.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:38:49.439 INFO ProgressMeter - NC_035788.1:67252789 1055.7 4158350 3938.9 07:38:59.683 INFO ProgressMeter - NC_035788.1:67309890 1055.9 4158780 3938.6 07:39:10.364 INFO ProgressMeter - NC_035788.1:67348810 1056.1 4159060 3938.2 07:39:20.396 INFO ProgressMeter - NC_035788.1:67421148 1056.2 4159510 3938.1 07:39:22.496 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:39:31.284 INFO ProgressMeter - NC_035788.1:67490870 1056.4 4160070 3937.9 07:39:41.332 INFO ProgressMeter - NC_035788.1:67551502 1056.6 4160500 3937.7 07:39:45.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:39:47.361 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:39:51.834 INFO ProgressMeter - NC_035788.1:67676124 1056.8 4161420 3937.9 07:40:01.887 INFO ProgressMeter - NC_035788.1:67763249 1056.9 4162030 3937.9 07:40:02.593 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:40:08.972 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:40:09.058 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:40:11.900 INFO ProgressMeter - NC_035788.1:67838835 1057.1 4162580 3937.8 07:40:20.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:40:20.425 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:40:21.960 INFO ProgressMeter - NC_035788.1:67886548 1057.3 4162920 3937.5 07:40:29.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:40:32.156 INFO ProgressMeter - NC_035788.1:68011538 1057.4 4163810 3937.7 07:40:42.638 INFO ProgressMeter - NC_035788.1:68060495 1057.6 4164120 3937.3 07:40:52.937 INFO ProgressMeter - NC_035788.1:68089224 1057.8 4164320 3936.9 07:41:04.423 INFO ProgressMeter - NC_035788.1:68107356 1058.0 4164440 3936.3 07:41:15.397 INFO ProgressMeter - NC_035788.1:68125414 1058.2 4164570 3935.7 07:41:21.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:41:21.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:41:21.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:41:25.778 INFO ProgressMeter - NC_035788.1:68168873 1058.3 4164850 3935.3 07:41:30.910 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:41:35.976 INFO ProgressMeter - NC_035788.1:68221817 1058.5 4165200 3935.0 07:41:39.283 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:41:39.283 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:41:39.283 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:41:39.284 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:41:39.284 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:41:46.414 INFO ProgressMeter - NC_035788.1:68321797 1058.7 4165930 3935.1 07:41:51.279 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:41:57.634 INFO ProgressMeter - NC_035788.1:68410525 1058.9 4166530 3934.9 07:41:59.385 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:03.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:04.625 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:07.684 INFO ProgressMeter - NC_035788.1:68530447 1059.0 4167360 3935.1 07:42:08.642 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:08.642 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:08.642 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:08.796 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:09.203 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:11.773 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:17.688 INFO ProgressMeter - NC_035788.1:68641423 1059.2 4168180 3935.3 07:42:27.840 INFO ProgressMeter - NC_035788.1:68727149 1059.4 4168870 3935.3 07:42:29.631 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:30.947 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:34.234 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:37.867 INFO ProgressMeter - NC_035788.1:68809584 1059.5 4169440 3935.2 07:42:47.908 INFO ProgressMeter - NC_035788.1:68894067 1059.7 4170020 3935.1 07:42:51.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:51.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:52.891 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:52.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:55.137 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:57.747 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:42:58.166 INFO ProgressMeter - NC_035788.1:69158793 1059.9 4171710 3936.1 07:42:58.646 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:43:08.287 INFO ProgressMeter - NC_035788.1:69227605 1060.0 4172230 3935.9 07:43:09.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:43:13.385 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:43:13.385 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:43:18.602 INFO ProgressMeter - NC_035788.1:69422597 1060.2 4173300 3936.3 07:43:23.713 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:43:26.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:43:28.986 INFO ProgressMeter - NC_035788.1:69503792 1060.4 4173920 3936.3 07:43:37.663 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:43:39.353 INFO ProgressMeter - NC_035788.1:69587815 1060.6 4174490 3936.2 07:43:50.216 INFO ProgressMeter - NC_035788.1:69670231 1060.7 4175100 3936.1 07:44:00.449 INFO ProgressMeter - NC_035788.1:69736886 1060.9 4175600 3935.9 07:44:01.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:01.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:01.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:01.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:01.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:01.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:06.302 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:06.822 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:10.464 INFO ProgressMeter - NC_035788.1:69880817 1061.1 4176570 3936.2 07:44:18.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:18.406 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:19.450 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:20.620 INFO ProgressMeter - NC_035788.1:69968635 1061.2 4177250 3936.2 07:44:30.957 INFO ProgressMeter - NC_035788.1:70051303 1061.4 4177860 3936.1 07:44:40.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:41.819 INFO ProgressMeter - NC_035788.1:70108007 1061.6 4178280 3935.9 07:44:48.800 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:52.062 INFO ProgressMeter - NC_035788.1:70177667 1061.8 4178780 3935.7 07:44:56.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:44:58.492 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:45:02.269 INFO ProgressMeter - NC_035788.1:70248066 1061.9 4179300 3935.6 07:45:12.398 INFO ProgressMeter - NC_035788.1:70359387 1062.1 4180180 3935.8 07:45:22.424 INFO ProgressMeter - NC_035788.1:70418565 1062.3 4180620 3935.6 07:45:32.985 INFO ProgressMeter - NC_035788.1:70489663 1062.4 4181190 3935.4 07:45:38.743 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:45:43.154 INFO ProgressMeter - NC_035788.1:70579637 1062.6 4181840 3935.4 07:45:53.164 INFO ProgressMeter - NC_035788.1:70674190 1062.8 4182560 3935.5 07:45:57.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:46:03.503 INFO ProgressMeter - NC_035788.1:70735409 1063.0 4182970 3935.2 07:46:13.855 INFO ProgressMeter - NC_035788.1:70805663 1063.1 4183530 3935.1 07:46:24.497 INFO ProgressMeter - NC_035788.1:70855242 1063.3 4183940 3934.8 07:46:33.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:46:34.695 INFO ProgressMeter - NC_035788.1:70951773 1063.5 4184720 3935.0 07:46:45.141 INFO ProgressMeter - NC_035788.1:71008132 1063.6 4185180 3934.7 07:46:46.424 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:46:55.146 INFO ProgressMeter - NC_035788.1:71066639 1063.8 4185620 3934.5 07:47:05.271 INFO ProgressMeter - NC_035788.1:71122838 1064.0 4186040 3934.3 07:47:15.451 INFO ProgressMeter - NC_035788.1:71221909 1064.2 4186820 3934.4 07:47:23.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:47:25.141 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:47:25.594 INFO ProgressMeter - NC_035788.1:71268432 1064.3 4187170 3934.1 07:47:36.351 INFO ProgressMeter - NC_035788.1:71372791 1064.5 4188040 3934.3 07:47:36.872 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:47:39.505 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:47:39.568 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:47:39.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:47:46.605 INFO ProgressMeter - NC_035788.1:71482749 1064.7 4188970 3934.5 07:47:56.811 INFO ProgressMeter - NC_035788.1:71600567 1064.8 4189920 3934.8 07:47:56.879 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:47:56.880 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:47:56.880 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:48:06.969 INFO ProgressMeter - NC_035788.1:71671842 1065.0 4190480 3934.7 07:48:12.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:48:17.066 INFO ProgressMeter - NC_035788.1:71895852 1065.2 4192190 3935.7 07:48:18.402 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:48:18.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:48:21.186 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:48:21.201 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:48:27.209 INFO ProgressMeter - NC_035788.1:72166814 1065.3 4193880 3936.6 07:48:29.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:48:29.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:48:29.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:48:29.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:48:37.324 INFO ProgressMeter - NC_035788.1:72279001 1065.5 4194630 3936.7 07:48:47.356 INFO ProgressMeter - NC_035788.1:72383376 1065.7 4195340 3936.8 07:48:52.519 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:48:52.520 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:48:57.605 INFO ProgressMeter - NC_035788.1:72650957 1065.9 4197050 3937.7 07:49:08.624 INFO ProgressMeter - NC_035788.1:72813815 1066.0 4197870 3937.8 07:49:11.578 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:49:18.799 INFO ProgressMeter - NC_035788.1:72869078 1066.2 4198210 3937.5 07:49:28.868 INFO ProgressMeter - NC_035788.1:73095880 1066.4 4199670 3938.3 07:49:39.381 INFO ProgressMeter - NC_035788.1:73220288 1066.6 4200590 3938.5 07:49:42.716 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:49:45.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:49:45.004 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:49:49.387 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:49:49.696 INFO ProgressMeter - NC_035788.1:73350539 1066.7 4201360 3938.6 07:49:50.521 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:49:50.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:49:50.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:49:50.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:49:50.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:49:50.784 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:49:59.779 INFO ProgressMeter - NC_035788.1:73456174 1066.9 4202030 3938.6 07:50:01.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:01.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:01.320 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:03.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:03.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:03.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:03.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:03.617 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:03.913 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:04.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:05.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:05.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:05.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:05.513 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:05.514 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:09.784 INFO ProgressMeter - NC_035788.1:73667962 1067.1 4203430 3939.3 07:50:11.625 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:12.681 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:12.681 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:14.352 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:19.800 INFO ProgressMeter - NC_035788.1:73889355 1067.2 4204720 3939.9 07:50:29.830 INFO ProgressMeter - NC_035788.1:74114648 1067.4 4206490 3940.9 07:50:34.075 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:34.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:34.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:36.917 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:50:40.183 INFO ProgressMeter - NC_035788.1:74252304 1067.6 4207520 3941.2 07:50:50.475 INFO ProgressMeter - NC_035788.1:74337181 1067.7 4208080 3941.1 07:50:56.362 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:00.819 INFO ProgressMeter - NC_035788.1:74431787 1067.9 4208810 3941.2 07:51:07.446 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:07.446 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:09.536 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:10.832 INFO ProgressMeter - NC_035788.1:74497663 1068.1 4209330 3941.0 07:51:11.016 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:20.915 INFO ProgressMeter - NC_035788.1:74624396 1068.2 4210130 3941.2 07:51:30.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:31.008 INFO ProgressMeter - NC_035788.1:74807541 1068.4 4211320 3941.7 07:51:32.963 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:35.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:35.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:36.166 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:39.993 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:41.022 INFO ProgressMeter - NC_035788.1:74909156 1068.6 4211970 3941.7 07:51:41.516 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:45.345 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:45.345 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:51.902 INFO ProgressMeter - NC_035788.1:75032331 1068.8 4212820 3941.8 07:51:53.633 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:51:57.234 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:52:02.038 INFO ProgressMeter - NC_035788.1:75245146 1068.9 4214200 3942.4 07:52:02.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:52:09.207 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:52:09.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:52:13.059 INFO ProgressMeter - NC_035788.1:75366368 1069.1 4215040 3942.6 07:52:23.235 INFO ProgressMeter - NC_035788.1:75447334 1069.3 4215580 3942.4 07:52:28.606 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:52:33.485 INFO ProgressMeter - NC_035788.1:75541040 1069.5 4216300 3942.5 07:52:34.182 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:52:41.803 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:52:41.803 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:52:41.803 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:52:43.777 INFO ProgressMeter - NC_035788.1:75614081 1069.6 4216830 3942.3 07:52:54.342 INFO ProgressMeter - NC_035788.1:75715762 1069.8 4217590 3942.4 07:53:02.954 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:53:02.954 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:53:05.266 INFO ProgressMeter - NC_035788.1:75809097 1070.0 4218180 3942.3 07:53:15.630 INFO ProgressMeter - NC_035788.1:75865414 1070.2 4218620 3942.1 07:53:19.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:53:19.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:53:19.821 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:53:19.822 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:53:23.814 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:53:24.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:53:25.648 INFO ProgressMeter - NC_035788.1:76016414 1070.3 4219550 3942.3 07:53:35.801 INFO ProgressMeter - NC_035788.1:76260809 1070.5 4221230 3943.3 07:53:38.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:53:38.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:53:39.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:53:39.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:53:46.831 INFO ProgressMeter - NC_035788.1:76435799 1070.7 4222210 3943.5 07:53:56.875 INFO ProgressMeter - NC_035788.1:76516462 1070.8 4222690 3943.3 07:54:04.990 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:54:06.891 INFO ProgressMeter - NC_035788.1:76816629 1071.0 4224570 3944.5 07:54:15.074 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:54:17.044 INFO ProgressMeter - NC_035788.1:76973978 1071.2 4225630 3944.8 07:54:17.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:54:27.339 INFO ProgressMeter - NC_035788.1:77039615 1071.4 4226080 3944.6 07:54:37.372 INFO ProgressMeter - NC_035788.1:77055031 1071.5 4226200 3944.1 07:54:47.373 INFO ProgressMeter - NC_035788.1:77224149 1071.7 4227330 3944.6 07:54:49.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:54:51.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:54:54.532 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:54:54.533 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:54:57.386 INFO ProgressMeter - NC_035788.1:77448631 1071.9 4228760 3945.3 07:55:07.734 INFO ProgressMeter - NC_035788.1:77525669 1072.0 4229400 3945.2 07:55:10.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:10.970 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:18.099 INFO ProgressMeter - NC_035788.1:77565460 1072.2 4229700 3944.9 07:55:20.661 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:20.661 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:21.444 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:25.137 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:25.986 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:28.384 INFO ProgressMeter - NC_035788.1:77620576 1072.4 4230110 3944.6 07:55:31.683 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:34.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:34.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:34.119 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:34.558 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:38.873 INFO ProgressMeter - NC_035788.1:77667770 1072.5 4230470 3944.3 07:55:49.058 INFO ProgressMeter - NC_035788.1:77714627 1072.7 4230830 3944.0 07:55:58.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:55:59.106 INFO ProgressMeter - NC_035788.1:77800284 1072.9 4231470 3944.0 07:56:08.244 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:09.202 INFO ProgressMeter - NC_035788.1:77874335 1073.0 4232010 3943.9 07:56:09.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:14.456 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:17.430 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:19.525 INFO ProgressMeter - NC_035788.1:77984719 1073.2 4232790 3944.0 07:56:29.748 INFO ProgressMeter - NC_035788.1:78036492 1073.4 4233230 3943.8 07:56:39.903 INFO ProgressMeter - NC_035788.1:78116708 1073.6 4233880 3943.8 07:56:40.732 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:47.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:47.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:47.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:47.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:47.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:47.164 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:47.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:47.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:47.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:47.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:47.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:47.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:49.969 INFO ProgressMeter - NC_035788.1:78189742 1073.7 4234430 3943.7 07:56:53.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:56:53.222 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:57:00.204 INFO ProgressMeter - NC_035788.1:78257819 1073.9 4234960 3943.5 07:57:02.448 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:57:10.370 INFO ProgressMeter - NC_035788.1:78317213 1074.1 4235390 3943.3 07:57:20.681 INFO ProgressMeter - NC_035788.1:78373497 1074.2 4235840 3943.1 07:57:30.836 INFO ProgressMeter - NC_035788.1:78431524 1074.4 4236320 3942.9 07:57:41.005 INFO ProgressMeter - NC_035788.1:78515400 1074.6 4236980 3942.9 07:57:51.400 INFO ProgressMeter - NC_035788.1:78604503 1074.8 4237680 3942.9 07:57:57.902 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:57:59.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:58:01.610 INFO ProgressMeter - NC_035788.1:78659648 1074.9 4238090 3942.7 07:58:12.310 INFO ProgressMeter - NC_035788.1:78720966 1075.1 4238540 3942.5 07:58:16.050 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:58:17.973 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:58:20.168 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:58:22.693 INFO ProgressMeter - NC_035788.1:78806982 1075.3 4239140 3942.4 07:58:25.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:58:29.213 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:58:32.764 INFO ProgressMeter - NC_035788.1:78878876 1075.4 4239630 3942.2 07:58:44.205 INFO ProgressMeter - NC_035788.1:78910440 1075.6 4239880 3941.8 07:58:54.251 INFO ProgressMeter - NC_035788.1:78927410 1075.8 4240010 3941.3 07:59:04.673 INFO ProgressMeter - NC_035788.1:78952276 1076.0 4240200 3940.8 07:59:10.652 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:10.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:10.653 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:15.201 INFO ProgressMeter - NC_035788.1:78996630 1076.1 4240530 3940.5 07:59:23.206 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:23.206 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:25.386 INFO ProgressMeter - NC_035788.1:79085603 1076.3 4241090 3940.4 07:59:32.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:33.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:33.950 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:35.428 INFO ProgressMeter - NC_035788.1:79157883 1076.5 4241620 3940.2 07:59:38.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:39.831 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:45.167 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:45.167 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:46.545 INFO ProgressMeter - NC_035788.1:79252319 1076.7 4242300 3940.2 07:59:48.101 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:48.101 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 07:59:56.753 INFO ProgressMeter - NC_035788.1:79282735 1076.8 4242500 3939.8 07:59:57.666 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:07.006 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:07.125 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:07.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:07.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:07.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:07.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:07.126 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:07.129 INFO ProgressMeter - NC_035788.1:79322073 1077.0 4242800 3939.4 08:00:07.654 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:17.473 INFO ProgressMeter - NC_035788.1:79394394 1077.2 4243350 3939.3 08:00:21.070 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:21.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:21.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:26.502 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:27.296 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:28.345 INFO ProgressMeter - NC_035788.1:79545116 1077.4 4244460 3939.7 08:00:29.475 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:38.912 INFO ProgressMeter - NC_035788.1:79584153 1077.5 4244740 3939.3 08:00:40.799 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:47.195 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:47.195 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:49.320 INFO ProgressMeter - NC_035788.1:79628174 1077.7 4245040 3938.9 08:00:57.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:57.941 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:58.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:58.139 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:59.042 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:00:59.332 INFO ProgressMeter - NC_035788.1:79705936 1077.9 4245580 3938.8 08:01:02.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:02.681 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:09.146 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:09.146 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:09.436 INFO ProgressMeter - NC_035788.1:79744847 1078.1 4245870 3938.5 08:01:13.510 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:19.503 INFO ProgressMeter - NC_035788.1:79788792 1078.2 4246210 3938.2 08:01:25.724 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:26.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:26.236 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:29.063 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:29.063 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:29.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:29.603 INFO ProgressMeter - NC_035788.1:79868877 1078.4 4246770 3938.1 08:01:38.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:39.876 INFO ProgressMeter - NC_035788.1:79930509 1078.6 4247250 3937.9 08:01:40.823 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:40.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:40.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:40.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:40.824 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:48.590 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:49.581 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:50.314 INFO ProgressMeter - NC_035788.1:80084240 1078.7 4248390 3938.3 08:01:52.981 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:52.981 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:01:56.509 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:02:00.497 INFO ProgressMeter - NC_035788.1:80161863 1078.9 4248960 3938.2 08:02:02.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:02:03.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:02:03.931 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:02:04.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:02:10.591 INFO ProgressMeter - NC_035788.1:80300346 1079.1 4249780 3938.4 08:02:12.047 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:02:12.047 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:02:16.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:02:16.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:02:20.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:02:20.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:02:20.031 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:02:20.602 INFO ProgressMeter - NC_035788.1:80385343 1079.2 4250430 3938.4 08:02:32.460 INFO ProgressMeter - NC_035788.1:80409867 1079.4 4250610 3937.8 08:02:45.049 INFO ProgressMeter - NC_035788.1:80447246 1079.6 4250890 3937.3 08:02:56.004 INFO ProgressMeter - NC_035788.1:80480248 1079.8 4251130 3936.9 08:03:06.564 INFO ProgressMeter - NC_035788.1:80566944 1080.0 4251780 3936.8 08:03:17.480 INFO ProgressMeter - NC_035788.1:80574934 1080.2 4251830 3936.2 08:03:27.823 INFO ProgressMeter - NC_035788.1:80604070 1080.4 4252040 3935.8 08:03:37.853 INFO ProgressMeter - NC_035788.1:80650807 1080.5 4252370 3935.5 08:03:47.947 INFO ProgressMeter - NC_035788.1:80711288 1080.7 4252800 3935.2 08:03:57.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:03:58.690 INFO ProgressMeter - NC_035788.1:80809034 1080.9 4253410 3935.2 08:04:00.886 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:06.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:06.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:06.360 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:09.301 INFO ProgressMeter - NC_035788.1:80863494 1081.1 4253810 3934.9 08:04:17.390 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:19.490 INFO ProgressMeter - NC_035788.1:81000006 1081.2 4254590 3935.0 08:04:19.817 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:19.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:23.638 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:29.571 INFO ProgressMeter - NC_035788.1:81255207 1081.4 4255880 3935.6 08:04:36.321 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:39.630 INFO ProgressMeter - NC_035788.1:81379330 1081.6 4256760 3935.8 08:04:43.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:45.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:49.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:49.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:49.176 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:49.177 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:49.643 INFO ProgressMeter - NC_035788.1:81571441 1081.7 4258030 3936.3 08:04:51.658 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:55.012 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:55.012 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:55.096 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:04:59.691 INFO ProgressMeter - NC_035788.1:81873584 1081.9 4259560 3937.1 08:05:00.227 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:04.818 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:05.033 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:05.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:05.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:05.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:05.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:05.432 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:05.433 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:05.667 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:08.532 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:08.532 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:08.532 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:09.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:09.780 INFO ProgressMeter - NC_035788.1:82041174 1082.1 4260620 3937.5 08:05:10.571 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:10.940 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:17.241 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:18.820 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:20.512 INFO ProgressMeter - NC_035788.1:82237294 1082.2 4261880 3938.0 08:05:29.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:30.561 INFO ProgressMeter - NC_035788.1:82463099 1082.4 4263290 3938.7 08:05:31.678 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:40.637 INFO ProgressMeter - NC_035788.1:82667135 1082.6 4264560 3939.3 08:05:48.886 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:50.921 INFO ProgressMeter - NC_035788.1:82823512 1082.7 4265600 3939.6 08:05:58.105 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:58.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:58.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:05:58.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:00.508 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:01.065 INFO ProgressMeter - NC_035788.1:83012501 1082.9 4266860 3940.2 08:06:04.232 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:11.072 INFO ProgressMeter - NC_035788.1:83256923 1083.1 4268550 3941.1 08:06:19.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:19.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:21.612 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:21.617 INFO ProgressMeter - NC_035788.1:83515406 1083.3 4270050 3941.9 08:06:22.676 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:30.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:30.904 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:31.252 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:31.836 INFO ProgressMeter - NC_035788.1:83729032 1083.4 4271420 3942.5 08:06:35.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:35.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:37.749 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:40.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:40.299 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:41.058 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:41.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:41.854 INFO ProgressMeter - NC_035788.1:83832373 1083.6 4272060 3942.5 08:06:42.981 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:43.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:43.459 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:43.460 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:43.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:51.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:06:51.905 INFO ProgressMeter - NC_035788.1:84193949 1083.8 4274180 3943.8 08:06:54.214 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:02.497 INFO ProgressMeter - NC_035788.1:84423121 1083.9 4275620 3944.5 08:07:04.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:04.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:04.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:10.816 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:10.817 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:12.769 INFO ProgressMeter - NC_035788.1:84812213 1084.1 4277660 3945.8 08:07:15.135 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:17.316 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:17.316 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:17.316 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:17.316 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:18.584 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:19.523 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:19.943 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:23.128 INFO ProgressMeter - NC_035788.1:85113041 1084.3 4279470 3946.8 08:07:27.486 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:33.146 INFO ProgressMeter - NC_035788.1:85313749 1084.4 4280900 3947.5 08:07:35.398 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:36.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:43.235 INFO ProgressMeter - NC_035788.1:85500058 1084.6 4282210 3948.1 08:07:45.815 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:49.095 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:07:53.292 INFO ProgressMeter - NC_035788.1:85683680 1084.8 4283330 3948.6 08:08:00.466 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:03.294 INFO ProgressMeter - NC_035788.1:85915933 1085.0 4284860 3949.4 08:08:04.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:09.945 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:09.945 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:09.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:09.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:09.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:09.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:09.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:09.946 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:13.401 INFO ProgressMeter - NC_035788.1:86067512 1085.1 4285830 3949.6 08:08:15.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:15.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:15.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:15.000 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:16.501 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:18.029 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:18.180 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:20.200 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:20.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:22.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:23.459 INFO ProgressMeter - NC_035788.1:86275340 1085.3 4287270 3950.4 08:08:24.080 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:24.450 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:28.079 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:28.096 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:32.281 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:33.541 INFO ProgressMeter - NC_035788.1:86511917 1085.5 4288830 3951.2 08:08:33.762 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:38.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:38.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:38.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:38.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:38.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:38.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:38.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:38.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:38.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:38.694 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:43.481 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:43.547 INFO ProgressMeter - NC_035788.1:86678526 1085.6 4289940 3951.6 08:08:44.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:44.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:44.757 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:08:53.782 INFO ProgressMeter - NC_035788.1:86884246 1085.8 4291210 3952.1 08:09:00.772 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:02.353 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:02.540 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:02.540 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:02.888 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:03.845 INFO ProgressMeter - NC_035788.1:87154541 1086.0 4292660 3952.9 08:09:04.117 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:13.997 INFO ProgressMeter - NC_035788.1:87366816 1086.1 4294070 3953.6 08:09:14.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:18.802 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:24.028 INFO ProgressMeter - NC_035788.1:87571015 1086.3 4295310 3954.1 08:09:25.644 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:25.644 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:35.026 INFO ProgressMeter - NC_035788.1:87932309 1086.5 4297180 3955.1 08:09:37.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:37.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:37.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:37.720 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:40.043 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:41.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:41.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:41.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:41.526 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:45.152 INFO ProgressMeter - NC_035788.1:88189361 1086.6 4298870 3956.1 08:09:55.223 INFO ProgressMeter - NC_035788.1:88364042 1086.8 4300130 3956.6 08:09:55.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:09:55.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:05.337 INFO ProgressMeter - NC_035788.1:88494162 1087.0 4301070 3956.9 08:10:07.483 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:10.080 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:15.655 INFO ProgressMeter - NC_035788.1:88629527 1087.2 4301880 3957.0 08:10:22.657 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:22.657 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:22.789 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:25.735 INFO ProgressMeter - NC_035788.1:88864070 1087.3 4303380 3957.8 08:10:30.874 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:32.521 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:33.332 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:33.803 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:35.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:35.893 INFO ProgressMeter - NC_035788.1:89103138 1087.5 4304740 3958.4 08:10:36.109 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:37.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:37.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:37.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:37.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:38.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:38.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:38.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:38.545 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:46.042 INFO ProgressMeter - NC_035788.1:89418288 1087.7 4306460 3959.4 08:10:54.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:56.242 INFO ProgressMeter - NC_035788.1:89673111 1087.8 4308120 3960.3 08:10:57.572 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:10:58.615 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:06.277 INFO ProgressMeter - NC_035788.1:89859348 1088.0 4309390 3960.8 08:11:06.285 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:12.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:16.403 INFO ProgressMeter - NC_035788.1:89954754 1088.2 4309950 3960.7 08:11:16.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:16.473 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:20.201 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:20.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:20.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:20.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:22.398 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:22.398 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:24.205 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:24.206 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:25.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:26.419 INFO ProgressMeter - NC_035788.1:90176428 1088.3 4311170 3961.2 08:11:31.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:31.169 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:32.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:32.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:32.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:32.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:33.303 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:36.665 INFO ProgressMeter - NC_035788.1:90398556 1088.5 4312540 3961.9 08:11:39.287 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:11:46.704 INFO ProgressMeter - NC_035788.1:90485126 1088.7 4313110 3961.8 08:11:57.133 INFO ProgressMeter - NC_035788.1:90600107 1088.8 4313880 3961.9 08:12:07.238 INFO ProgressMeter - NC_035788.1:90705447 1089.0 4314640 3962.0 08:12:10.259 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:12:17.384 INFO ProgressMeter - NC_035788.1:90885855 1089.2 4315810 3962.4 08:12:18.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:12:26.771 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:12:27.423 INFO ProgressMeter - NC_035788.1:91026571 1089.4 4316830 3962.7 08:12:33.149 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:12:36.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:12:36.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:12:36.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:12:37.516 INFO ProgressMeter - NC_035788.1:91135503 1089.5 4317680 3962.9 08:12:39.666 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:12:46.354 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:12:47.632 INFO ProgressMeter - NC_035788.1:91305866 1089.7 4318810 3963.3 08:12:53.165 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:12:56.918 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:12:57.927 INFO ProgressMeter - NC_035788.1:91530303 1089.9 4320080 3963.9 08:12:59.332 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:13:02.950 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:13:08.102 INFO ProgressMeter - NC_035788.1:91683511 1090.0 4321230 3964.3 08:13:16.652 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:13:18.282 INFO ProgressMeter - NC_035788.1:91748315 1090.2 4321750 3964.2 08:13:28.833 INFO ProgressMeter - NC_035788.1:91862009 1090.4 4322640 3964.4 08:13:29.622 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:13:37.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:13:38.995 INFO ProgressMeter - NC_035788.1:92028369 1090.5 4323920 3964.9 08:13:41.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:13:47.705 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:13:49.007 INFO ProgressMeter - NC_035788.1:92139535 1090.7 4324720 3965.0 08:13:53.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:13:53.239 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:13:55.640 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:13:59.007 INFO ProgressMeter - NC_035788.1:92277391 1090.9 4325680 3965.3 08:14:05.407 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:09.014 INFO ProgressMeter - NC_035788.1:92412396 1091.0 4326640 3965.6 08:14:09.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:14.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:19.263 INFO ProgressMeter - NC_035788.1:92688706 1091.2 4328080 3966.3 08:14:22.719 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:23.986 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:29.272 INFO ProgressMeter - NC_035788.1:92788901 1091.4 4328730 3966.3 08:14:39.038 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:39.224 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:39.302 INFO ProgressMeter - NC_035788.1:92961571 1091.6 4329850 3966.7 08:14:40.969 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:41.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:42.572 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:42.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:42.976 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:44.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:44.376 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:44.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:44.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:44.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:44.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:44.845 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:46.820 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:46.820 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:46.820 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:47.506 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:49.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:49.097 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:49.366 INFO ProgressMeter - NC_035788.1:93226998 1091.7 4331310 3967.4 08:14:50.722 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:51.481 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:53.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:56.011 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:56.012 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:56.852 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:14:59.377 INFO ProgressMeter - NC_035788.1:93396749 1091.9 4332330 3967.8 08:15:09.963 INFO ProgressMeter - NC_035788.1:93552298 1092.1 4333300 3968.0 08:15:11.209 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:15:20.327 INFO ProgressMeter - NC_035788.1:93647433 1092.2 4334080 3968.1 08:15:30.402 INFO ProgressMeter - NC_035788.1:93781217 1092.4 4334930 3968.3 08:15:31.582 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:15:40.549 INFO ProgressMeter - NC_035788.1:93811230 1092.6 4335130 3967.8 08:15:49.655 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:15:50.562 INFO ProgressMeter - NC_035788.1:93839917 1092.7 4335350 3967.4 08:15:53.752 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:16:01.874 INFO ProgressMeter - NC_035788.1:93960953 1092.9 4336200 3967.5 08:16:10.644 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:16:13.565 INFO ProgressMeter - NC_035788.1:94005033 1093.1 4336530 3967.1 08:16:17.416 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:16:23.736 INFO ProgressMeter - NC_035788.1:94160177 1093.3 4337350 3967.2 08:16:33.755 INFO ProgressMeter - NC_035788.1:94210932 1093.5 4337650 3966.9 08:16:41.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:16:41.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:16:43.990 INFO ProgressMeter - NC_035788.1:94339081 1093.6 4338450 3967.0 08:16:45.924 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:16:53.768 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:16:53.769 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:16:54.004 INFO ProgressMeter - NC_035788.1:94443462 1093.8 4339120 3967.0 08:16:59.813 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:03.810 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:04.099 INFO ProgressMeter - NC_035788.1:94667415 1094.0 4340360 3967.6 08:17:06.642 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:07.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:07.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:07.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:07.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:07.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:07.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:07.975 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:13.326 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:14.178 INFO ProgressMeter - NC_035788.1:94862824 1094.1 4341510 3968.0 08:17:22.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:25.186 INFO ProgressMeter - NC_035788.1:94943991 1094.3 4341960 3967.7 08:17:29.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:35.351 INFO ProgressMeter - NC_035788.1:95052468 1094.5 4342790 3967.9 08:17:38.391 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:40.844 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:41.118 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:45.764 INFO ProgressMeter - NC_035788.1:95241230 1094.7 4343870 3968.2 08:17:46.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:46.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:46.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:46.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:46.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:46.146 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:52.535 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:17:55.835 INFO ProgressMeter - NC_035788.1:95321062 1094.8 4344370 3968.1 08:18:06.052 INFO ProgressMeter - NC_035788.1:95450151 1095.0 4345220 3968.3 08:18:10.585 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:15.611 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:16.237 INFO ProgressMeter - NC_035788.1:95633551 1095.2 4346200 3968.5 08:18:19.779 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:26.561 INFO ProgressMeter - NC_035788.1:95741465 1095.3 4346950 3968.6 08:18:28.744 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:29.563 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:34.404 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:36.563 INFO ProgressMeter - NC_035788.1:96147648 1095.5 4348850 3969.7 08:18:36.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:39.412 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:39.413 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:40.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:44.193 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:46.748 INFO ProgressMeter - NC_035788.1:96439679 1095.7 4350210 3970.3 08:18:47.865 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:51.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:51.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:51.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:51.379 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:18:56.859 INFO ProgressMeter - NC_035788.1:96527855 1095.8 4350680 3970.2 08:18:59.354 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:02.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:02.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:02.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:02.651 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:02.808 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:02.896 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:06.864 INFO ProgressMeter - NC_035788.1:96662880 1096.0 4351480 3970.3 08:19:13.483 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:13.706 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:13.774 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:17.199 INFO ProgressMeter - NC_035788.1:97095936 1096.2 4353580 3971.6 08:19:20.246 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:27.527 INFO ProgressMeter - NC_035788.1:97337319 1096.4 4354930 3972.2 08:19:34.052 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:37.712 INFO ProgressMeter - NC_035788.1:97619228 1096.5 4356610 3973.1 08:19:37.851 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:37.930 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:46.218 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:47.944 INFO ProgressMeter - NC_035788.1:97765963 1096.7 4357440 3973.2 08:19:51.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:53.080 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:53.081 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:19:57.998 INFO ProgressMeter - NC_035788.1:98090304 1096.9 4358980 3974.0 08:19:59.495 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:04.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:05.007 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:05.008 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:05.676 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:08.082 INFO ProgressMeter - NC_035788.1:98485410 1097.0 4360820 3975.1 08:20:09.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:15.345 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:18.437 INFO ProgressMeter - NC_035788.1:98775469 1097.2 4362440 3976.0 08:20:28.630 INFO ProgressMeter - NC_035788.1:99012069 1097.4 4363760 3976.6 08:20:30.328 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:31.310 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:31.323 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:35.099 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:35.099 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:35.099 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:38.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:38.380 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:38.676 INFO ProgressMeter - NC_035788.1:99298755 1097.5 4365350 3977.4 08:20:46.114 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:46.898 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:46.898 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:46.898 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:46.898 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:46.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:46.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:20:49.560 INFO ProgressMeter - NC_035788.1:99426938 1097.7 4366160 3977.5 08:20:59.639 INFO ProgressMeter - NC_035788.1:99516429 1097.9 4366840 3977.5 08:21:09.799 INFO ProgressMeter - NC_035788.1:99589478 1098.1 4367390 3977.4 08:21:10.107 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:21:20.552 INFO ProgressMeter - NC_035788.1:99628112 1098.2 4367680 3977.0 08:21:31.386 INFO ProgressMeter - NC_035788.1:99658162 1098.4 4367920 3976.6 08:21:41.400 INFO ProgressMeter - NC_035788.1:99671210 1098.6 4368020 3976.0 08:21:46.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:21:47.624 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:21:48.011 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:21:48.011 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:21:50.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:21:52.424 INFO ProgressMeter - NC_035788.1:99738166 1098.8 4368510 3975.8 08:22:02.425 INFO ProgressMeter - NC_035788.1:99776669 1098.9 4368770 3975.5 08:22:12.374 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:22:12.374 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:22:12.432 INFO ProgressMeter - NC_035788.1:99841570 1099.1 4369220 3975.3 08:22:17.819 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:22:18.232 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:22:19.683 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:22:22.599 INFO ProgressMeter - NC_035788.1:99930950 1099.3 4369840 3975.2 08:22:32.322 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:22:33.451 INFO ProgressMeter - NC_035788.1:99962749 1099.5 4370070 3974.8 08:22:43.857 INFO ProgressMeter - NC_035788.1:99994540 1099.6 4370300 3974.3 08:22:44.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:22:54.496 INFO ProgressMeter - NC_035788.1:100027859 1099.8 4370560 3973.9 08:23:04.736 INFO ProgressMeter - NC_035788.1:100051767 1100.0 4370740 3973.5 08:23:15.138 INFO ProgressMeter - NC_035788.1:100083755 1100.1 4370950 3973.1 08:23:19.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:23:19.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:23:24.200 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:23:24.200 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:23:25.557 INFO ProgressMeter - NC_035788.1:100154238 1100.3 4371400 3972.8 08:23:26.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:23:28.141 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:23:35.901 INFO ProgressMeter - NC_035788.1:100273615 1100.5 4372050 3972.8 08:23:45.922 INFO ProgressMeter - NC_035788.1:100323038 1100.7 4372400 3972.5 08:23:54.297 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:23:55.928 INFO ProgressMeter - NC_035788.1:100776947 1100.8 4374620 3973.9 08:23:59.171 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:23:59.171 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:23:59.171 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:05.929 INFO ProgressMeter - NC_035788.1:100891595 1101.0 4375460 3974.1 08:24:14.831 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:15.946 INFO ProgressMeter - NC_035788.1:100976746 1101.2 4376010 3974.0 08:24:17.684 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:17.684 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:18.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:18.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:18.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:18.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:18.529 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:19.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:19.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:19.561 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:20.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:22.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:22.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:24.182 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:26.710 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:26.715 INFO ProgressMeter - NC_035788.1:101063465 1101.3 4376600 3973.9 08:24:31.752 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:31.753 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:24:38.036 INFO ProgressMeter - NC_035788.1:101081108 1101.5 4376710 3973.3 08:24:48.151 INFO ProgressMeter - NC_035788.1:101095762 1101.7 4376820 3972.8 08:24:58.890 INFO ProgressMeter - NC_035788.1:101115324 1101.9 4376950 3972.3 08:25:09.009 INFO ProgressMeter - NC_035788.1:101214210 1102.0 4377690 3972.3 08:25:20.324 INFO ProgressMeter - NC_035788.1:101229029 1102.2 4377800 3971.8 08:25:24.808 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:25:31.744 INFO ProgressMeter - NC_035788.1:101236616 1102.4 4377850 3971.1 08:25:44.648 INFO ProgressMeter - NC_035788.1:101253114 1102.6 4377970 3970.4 08:25:54.963 INFO ProgressMeter - NC_035788.1:101262609 1102.8 4378040 3969.9 08:25:54.996 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:26:05.961 INFO ProgressMeter - NC_035788.1:101273410 1103.0 4378120 3969.3 08:26:16.256 INFO ProgressMeter - NC_035788.1:101285055 1103.2 4378210 3968.8 08:26:16.698 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:26:23.098 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:26:23.098 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:26:26.475 INFO ProgressMeter - NC_035788.1:101303696 1103.3 4378350 3968.3 08:26:34.089 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:26:37.086 INFO ProgressMeter - NC_035788.1:101326486 1103.5 4378520 3967.8 08:26:47.232 INFO ProgressMeter - NC_035788.1:101341832 1103.7 4378640 3967.3 08:26:53.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:26:57.552 INFO ProgressMeter - NC_035788.1:101362509 1103.9 4378800 3966.8 08:27:00.440 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:27:09.015 INFO ProgressMeter - NC_035788.1:101398217 1104.0 4379040 3966.4 08:27:19.047 INFO ProgressMeter - NC_035788.1:101412268 1104.2 4379140 3965.8 08:27:23.410 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:27:29.578 INFO ProgressMeter - NC_035788.1:101440997 1104.4 4379390 3965.4 08:27:36.703 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:27:39.709 INFO ProgressMeter - NC_035788.1:101452072 1104.6 4379470 3964.9 08:27:50.830 INFO ProgressMeter - NC_035788.1:101475139 1104.7 4379640 3964.4 08:28:00.991 INFO ProgressMeter - NC_035788.1:101488947 1104.9 4379750 3963.9 08:28:11.378 INFO ProgressMeter - NC_035788.1:101499978 1105.1 4379830 3963.3 08:28:17.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.603 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.605 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:17.641 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:18.877 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:18.915 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:21.481 INFO ProgressMeter - NC_035788.1:101523709 1105.3 4380010 3962.9 08:28:31.917 INFO ProgressMeter - NC_035788.1:101540776 1105.4 4380140 3962.4 08:28:42.746 INFO ProgressMeter - NC_035788.1:101566169 1105.6 4380310 3961.9 08:28:46.225 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:53.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:53.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:53.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:53.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:53.226 INFO ProgressMeter - NC_035788.1:101586917 1105.8 4380450 3961.4 08:28:54.130 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:28:58.569 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:29:03.384 INFO ProgressMeter - NC_035788.1:101640118 1106.0 4380820 3961.1 08:29:13.594 INFO ProgressMeter - NC_035788.1:101657498 1106.1 4380940 3960.6 08:29:23.745 INFO ProgressMeter - NC_035788.1:101699716 1106.3 4381200 3960.3 08:29:33.423 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:29:35.527 INFO ProgressMeter - NC_035788.1:101743435 1106.5 4381480 3959.8 08:29:45.551 INFO ProgressMeter - NC_035788.1:101766814 1106.7 4381620 3959.3 08:29:56.433 INFO ProgressMeter - NC_035788.1:101798336 1106.8 4381800 3958.9 08:30:02.006 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:06.665 INFO ProgressMeter - NC_035788.1:101821851 1107.0 4381950 3958.4 08:30:10.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:10.142 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:10.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:10.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:10.233 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:12.318 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:17.588 INFO ProgressMeter - NC_035788.1:101842151 1107.2 4382090 3957.9 08:30:19.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:19.226 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:27.754 INFO ProgressMeter - NC_035788.1:101851657 1107.4 4382150 3957.3 08:30:37.773 INFO ProgressMeter - NC_035788.1:101990202 1107.5 4382940 3957.4 08:30:48.091 INFO ProgressMeter - NC_035788.1:102025803 1107.7 4383160 3957.0 08:30:49.204 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:51.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:51.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:55.677 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:56.003 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:30:58.415 INFO ProgressMeter - NC_035788.1:102296304 1107.9 4384580 3957.7 08:31:06.398 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:06.458 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:08.537 INFO ProgressMeter - NC_035788.1:102557094 1108.0 4386140 3958.5 08:31:09.028 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:09.274 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:10.447 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:11.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:18.618 INFO ProgressMeter - NC_035788.1:102792893 1108.2 4387370 3959.0 08:31:27.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:27.084 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:28.247 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:28.912 INFO ProgressMeter - NC_035788.1:102902559 1108.4 4387970 3958.9 08:31:29.634 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:31.685 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:33.566 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:33.899 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:37.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:37.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:38.935 INFO ProgressMeter - NC_035788.1:103072758 1108.5 4389110 3959.3 08:31:47.295 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:48.897 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:48.946 INFO ProgressMeter - NC_035788.1:103200805 1108.7 4389990 3959.5 08:31:49.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:51.616 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:52.260 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:54.034 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:56.841 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:58.953 INFO ProgressMeter - NC_035788.1:103678141 1108.9 4392260 3961.0 08:31:59.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:31:59.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:01.284 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:01.285 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:05.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:08.991 INFO ProgressMeter - NC_035788.1:103928061 1109.0 4393420 3961.4 08:32:13.496 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:18.702 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:19.049 INFO ProgressMeter - NC_035788.1:104099040 1109.2 4394490 3961.8 08:32:26.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:29.177 INFO ProgressMeter - NC_035789.1:30454 1109.4 4395090 3961.7 08:32:30.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:30.368 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:30.369 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:30.896 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:32.133 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:38.949 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:39.201 INFO ProgressMeter - NC_035789.1:302187 1109.5 4396840 3962.7 08:32:39.414 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:40.950 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:40.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:40.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:40.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:40.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:40.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:40.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:40.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:40.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:41.725 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:44.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:46.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:46.249 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:46.579 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:46.580 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:47.358 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:32:49.903 INFO ProgressMeter - NC_035789.1:498390 1109.7 4398060 3963.2 08:32:59.904 INFO ProgressMeter - NC_035789.1:555332 1109.9 4398400 3962.9 08:33:09.797 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:33:09.798 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:33:10.267 INFO ProgressMeter - NC_035789.1:632787 1110.1 4398800 3962.6 08:33:16.621 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:33:18.150 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:33:21.458 INFO ProgressMeter - NC_035789.1:651873 1110.3 4398920 3962.1 08:33:33.725 INFO ProgressMeter - NC_035789.1:659057 1110.5 4398960 3961.4 08:33:43.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:33:44.250 INFO ProgressMeter - NC_035789.1:688997 1110.6 4399180 3961.0 08:33:54.339 INFO ProgressMeter - NC_035789.1:721911 1110.8 4399430 3960.6 08:34:05.962 INFO ProgressMeter - NC_035789.1:788278 1111.0 4399870 3960.3 08:34:16.717 INFO ProgressMeter - NC_035789.1:808346 1111.2 4400010 3959.8 08:34:28.330 INFO ProgressMeter - NC_035789.1:825291 1111.4 4400130 3959.2 08:34:29.546 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:34:29.547 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:34:38.625 INFO ProgressMeter - NC_035789.1:835101 1111.5 4400190 3958.6 08:34:48.820 INFO ProgressMeter - NC_035789.1:933235 1111.7 4400820 3958.6 08:34:50.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:34:59.255 INFO ProgressMeter - NC_035789.1:984466 1111.9 4401140 3958.3 08:35:02.436 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:35:09.539 INFO ProgressMeter - NC_035789.1:1093492 1112.1 4401800 3958.3 08:35:19.703 INFO ProgressMeter - NC_035789.1:1111851 1112.2 4401920 3957.8 08:35:28.236 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:35:31.076 INFO ProgressMeter - NC_035789.1:1134843 1112.4 4402080 3957.2 08:35:41.329 INFO ProgressMeter - NC_035789.1:1146530 1112.6 4402160 3956.7 08:35:50.828 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:35:52.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:35:52.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:35:52.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:35:53.748 INFO ProgressMeter - NC_035789.1:1165708 1112.8 4402300 3956.1 08:36:05.048 INFO ProgressMeter - NC_035789.1:1183390 1113.0 4402410 3955.5 08:36:10.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:15.530 INFO ProgressMeter - NC_035789.1:1198773 1113.2 4402520 3955.0 08:36:15.701 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:26.505 INFO ProgressMeter - NC_035789.1:1216927 1113.3 4402650 3954.5 08:36:27.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:27.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:27.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:27.591 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:27.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:27.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:27.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:27.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:27.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:36.580 INFO ProgressMeter - NC_035789.1:1250369 1113.5 4402870 3954.1 08:36:41.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:41.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:41.370 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:42.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:42.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:42.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:42.592 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:42.613 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:42.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:42.872 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:43.372 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:47.010 INFO ProgressMeter - NC_035789.1:1448157 1113.7 4404010 3954.5 08:36:49.044 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:51.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:36:58.213 INFO ProgressMeter - NC_035789.1:1516903 1113.9 4404440 3954.2 08:37:02.742 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:06.964 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:06.981 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:07.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:07.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:07.045 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:08.283 INFO ProgressMeter - NC_035789.1:1579956 1114.0 4404820 3953.9 08:37:09.145 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:16.061 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:18.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:18.046 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:18.468 INFO ProgressMeter - NC_035789.1:1618529 1114.2 4405070 3953.6 08:37:21.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:21.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:21.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:21.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:21.415 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:22.535 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:25.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:25.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:26.036 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:26.036 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:26.036 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:26.803 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:29.805 INFO ProgressMeter - NC_035789.1:1690760 1114.4 4405630 3953.4 08:37:37.958 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:37:41.098 INFO ProgressMeter - NC_035789.1:1715057 1114.6 4405810 3952.9 08:37:51.135 INFO ProgressMeter - NC_035789.1:1730787 1114.7 4405920 3952.4 08:38:01.884 INFO ProgressMeter - NC_035789.1:1755557 1114.9 4406100 3951.9 08:38:14.070 INFO ProgressMeter - NC_035789.1:1765687 1115.1 4406160 3951.3 08:38:19.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:38:19.602 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:38:24.258 INFO ProgressMeter - NC_035789.1:1779372 1115.3 4406250 3950.7 08:38:35.214 INFO ProgressMeter - NC_035789.1:1805934 1115.5 4406410 3950.2 08:38:45.686 INFO ProgressMeter - NC_035789.1:1819906 1115.7 4406510 3949.7 08:38:55.800 INFO ProgressMeter - NC_035789.1:1841491 1115.8 4406670 3949.2 08:38:56.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:38:56.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:38:57.929 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:38:57.995 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:38:59.868 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:38:59.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:39:00.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:39:03.614 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:39:03.615 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:39:05.885 INFO ProgressMeter - NC_035789.1:1895065 1116.0 4406980 3948.9 08:39:16.434 INFO ProgressMeter - NC_035789.1:1918574 1116.2 4407120 3948.4 08:39:16.630 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:39:25.499 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:39:27.517 INFO ProgressMeter - NC_035789.1:1932451 1116.4 4407210 3947.9 08:39:38.997 INFO ProgressMeter - NC_035789.1:1950474 1116.5 4407340 3947.3 08:39:44.414 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:39:49.638 INFO ProgressMeter - NC_035789.1:1964423 1116.7 4407450 3946.8 08:39:57.960 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:39:57.961 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:39:59.982 INFO ProgressMeter - NC_035789.1:2015815 1116.9 4407710 3946.4 08:40:00.110 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:40:04.520 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:40:05.761 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:40:05.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:40:10.355 INFO ProgressMeter - NC_035789.1:2121605 1117.1 4408390 3946.4 08:40:21.344 INFO ProgressMeter - NC_035789.1:2149409 1117.3 4408600 3945.9 08:40:31.862 INFO ProgressMeter - NC_035789.1:2163817 1117.4 4408710 3945.4 08:40:39.469 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:40:42.280 INFO ProgressMeter - NC_035789.1:2197430 1117.6 4408950 3945.0 08:40:50.427 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:40:52.312 INFO ProgressMeter - NC_035789.1:2251533 1117.8 4409330 3944.8 08:41:02.762 INFO ProgressMeter - NC_035789.1:2316735 1117.9 4409840 3944.6 08:41:13.776 INFO ProgressMeter - NC_035789.1:2352896 1118.1 4410070 3944.2 08:41:15.859 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:41:15.860 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:41:24.587 INFO ProgressMeter - NC_035789.1:2380467 1118.3 4410260 3943.7 08:41:34.620 INFO ProgressMeter - NC_035789.1:2402568 1118.5 4410420 3943.3 08:41:45.008 INFO ProgressMeter - NC_035789.1:2420590 1118.6 4410540 3942.7 08:41:49.158 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:41:55.044 INFO ProgressMeter - NC_035789.1:2455812 1118.8 4410810 3942.4 08:42:00.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:42:00.301 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:42:03.238 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:42:05.647 INFO ProgressMeter - NC_035789.1:2491886 1119.0 4411070 3942.0 08:42:07.825 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:42:16.023 INFO ProgressMeter - NC_035789.1:2549055 1119.2 4411440 3941.7 08:42:19.951 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:42:21.565 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:42:22.956 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:42:22.957 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:42:26.154 INFO ProgressMeter - NC_035789.1:2649433 1119.3 4412060 3941.7 08:42:31.832 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:42:33.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:42:36.281 INFO ProgressMeter - NC_035789.1:2846150 1119.5 4413290 3942.2 08:42:47.659 INFO ProgressMeter - NC_035789.1:2872803 1119.7 4413480 3941.7 08:42:51.717 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:42:57.178 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:42:58.042 INFO ProgressMeter - NC_035789.1:2955806 1119.9 4414120 3941.7 08:42:59.764 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:08.239 INFO ProgressMeter - NC_035789.1:2988858 1120.0 4414370 3941.3 08:43:11.332 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:14.932 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:15.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:15.112 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:18.254 INFO ProgressMeter - NC_035789.1:3046137 1120.2 4414730 3941.0 08:43:20.670 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:23.590 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:23.590 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:28.403 INFO ProgressMeter - NC_035789.1:3178436 1120.4 4415590 3941.2 08:43:29.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:29.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:29.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:29.094 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:29.095 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:38.633 INFO ProgressMeter - NC_035789.1:3224069 1120.5 4415880 3940.9 08:43:48.993 INFO ProgressMeter - NC_035789.1:3242230 1120.7 4416010 3940.4 08:43:49.053 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:43:59.662 INFO ProgressMeter - NC_035789.1:3255406 1120.9 4416090 3939.8 08:44:06.739 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:44:06.830 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:44:08.862 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:44:09.693 INFO ProgressMeter - NC_035789.1:3344598 1121.1 4416690 3939.8 08:44:19.705 INFO ProgressMeter - NC_035789.1:3445892 1121.2 4417500 3939.9 08:44:22.374 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:44:26.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:44:29.722 INFO ProgressMeter - NC_035789.1:3505172 1121.4 4417920 3939.7 08:44:37.749 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:44:38.067 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:44:39.787 INFO ProgressMeter - NC_035789.1:3578514 1121.6 4418480 3939.6 08:44:48.342 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:44:49.933 INFO ProgressMeter - NC_035789.1:3647385 1121.7 4418980 3939.4 08:45:00.467 INFO ProgressMeter - NC_035789.1:3721247 1121.9 4419520 3939.3 08:45:12.116 INFO ProgressMeter - NC_035789.1:3803267 1122.1 4420050 3939.1 08:45:22.830 INFO ProgressMeter - NC_035789.1:3878473 1122.3 4420610 3939.0 08:45:32.332 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:34.014 INFO ProgressMeter - NC_035789.1:3961808 1122.5 4421140 3938.8 08:45:44.107 INFO ProgressMeter - NC_035789.1:4016147 1122.6 4421520 3938.5 08:45:47.240 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:47.240 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:50.267 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:50.268 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:50.269 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:50.270 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:50.271 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:50.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:50.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:50.285 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:50.286 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:50.461 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:51.820 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:54.322 INFO ProgressMeter - NC_035789.1:4084837 1122.8 4421950 3938.3 08:45:54.465 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:54.576 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:45:55.485 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:00.482 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:05.353 INFO ProgressMeter - NC_035789.1:4168298 1123.0 4422400 3938.1 08:46:07.449 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:12.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:12.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:15.399 INFO ProgressMeter - NC_035789.1:4292033 1123.2 4423140 3938.1 08:46:18.441 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:18.442 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:18.442 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:18.442 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:26.331 INFO ProgressMeter - NC_035789.1:4364842 1123.3 4423710 3938.0 08:46:36.334 INFO ProgressMeter - NC_035789.1:4445631 1123.5 4424310 3938.0 08:46:38.394 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:38.395 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:38.395 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:40.123 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:42.528 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:42.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:42.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:42.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:42.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:42.835 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:46:46.389 INFO ProgressMeter - NC_035789.1:4654195 1123.7 4425500 3938.4 08:46:56.411 INFO ProgressMeter - NC_035789.1:4763407 1123.8 4426290 3938.6 08:47:06.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:06.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:06.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:06.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:06.189 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:06.228 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:07.294 INFO ProgressMeter - NC_035789.1:4822671 1124.0 4426710 3938.3 08:47:15.065 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:15.615 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:17.506 INFO ProgressMeter - NC_035789.1:4885215 1124.2 4427200 3938.1 08:47:26.304 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:26.304 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:26.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:26.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:29.153 INFO ProgressMeter - NC_035789.1:4973830 1124.4 4427840 3938.0 08:47:39.160 INFO ProgressMeter - NC_035789.1:5007217 1124.5 4428090 3937.7 08:47:49.205 INFO ProgressMeter - NC_035789.1:5105125 1124.7 4428880 3937.8 08:47:51.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:51.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:51.399 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:47:59.536 INFO ProgressMeter - NC_035789.1:5231240 1124.9 4429900 3938.1 08:48:09.946 INFO ProgressMeter - NC_035789.1:5297150 1125.1 4430430 3937.9 08:48:15.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:48:15.688 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:48:16.240 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:48:20.704 INFO ProgressMeter - NC_035789.1:5357845 1125.2 4430790 3937.6 08:48:24.396 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:48:24.971 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:48:28.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:48:28.236 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:48:30.730 INFO ProgressMeter - NC_035789.1:5407786 1125.4 4431190 3937.4 08:48:40.838 INFO ProgressMeter - NC_035789.1:5449183 1125.6 4431530 3937.1 08:48:47.232 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:48:47.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:48:47.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:48:47.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:48:51.620 INFO ProgressMeter - NC_035789.1:5552955 1125.8 4432280 3937.2 08:48:57.893 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:01.763 INFO ProgressMeter - NC_035789.1:5612306 1125.9 4432710 3936.9 08:49:12.114 INFO ProgressMeter - NC_035789.1:5690138 1126.1 4433260 3936.8 08:49:17.328 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:19.691 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:22.215 INFO ProgressMeter - NC_035789.1:5788590 1126.3 4433900 3936.8 08:49:24.306 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:30.608 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:31.847 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:31.847 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:31.931 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:32.226 INFO ProgressMeter - NC_035789.1:6069287 1126.4 4435540 3937.7 08:49:32.357 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:32.942 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:33.463 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:33.627 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:39.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:39.039 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:42.201 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:42.348 INFO ProgressMeter - NC_035789.1:6345008 1126.6 4437110 3938.5 08:49:42.511 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:48.311 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:48.311 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:48.311 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:48.311 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:48.551 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:52.170 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:49:52.397 INFO ProgressMeter - NC_035789.1:6600155 1126.8 4438520 3939.2 08:50:01.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:50:02.556 INFO ProgressMeter - NC_035789.1:6746538 1126.9 4439580 3939.5 08:50:12.847 INFO ProgressMeter - NC_035789.1:6907989 1127.1 4440420 3939.7 08:50:12.886 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:50:22.864 INFO ProgressMeter - NC_035789.1:7015402 1127.3 4441150 3939.7 08:50:32.983 INFO ProgressMeter - NC_035789.1:7177866 1127.4 4442210 3940.1 08:50:35.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:50:35.120 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:50:41.649 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:50:41.775 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:50:43.030 INFO ProgressMeter - NC_035789.1:7297187 1127.6 4443010 3940.2 08:50:45.873 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:50:46.083 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:50:48.311 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:50:49.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:50:49.708 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:50:52.932 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:50:53.066 INFO ProgressMeter - NC_035789.1:7604098 1127.8 4444620 3941.0 08:51:03.106 INFO ProgressMeter - NC_035789.1:7648921 1127.9 4444870 3940.7 08:51:03.187 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:51:07.318 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:51:13.268 INFO ProgressMeter - NC_035789.1:7752847 1128.1 4445550 3940.7 08:51:15.138 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:51:23.360 INFO ProgressMeter - NC_035789.1:7866542 1128.3 4446310 3940.8 08:51:33.490 INFO ProgressMeter - NC_035789.1:7919226 1128.5 4446730 3940.6 08:51:43.737 INFO ProgressMeter - NC_035789.1:7990617 1128.6 4447230 3940.4 08:51:53.774 INFO ProgressMeter - NC_035789.1:8070781 1128.8 4447770 3940.3 08:52:02.850 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:52:04.575 INFO ProgressMeter - NC_035789.1:8173307 1129.0 4448380 3940.2 08:52:09.971 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:52:14.930 INFO ProgressMeter - NC_035789.1:8265958 1129.1 4448920 3940.1 08:52:19.203 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:52:19.463 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:52:20.842 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:52:20.843 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:52:25.192 INFO ProgressMeter - NC_035789.1:8392646 1129.3 4449670 3940.1 08:52:35.443 INFO ProgressMeter - NC_035789.1:8456618 1129.5 4450160 3940.0 08:52:38.737 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:52:39.051 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:52:45.522 INFO ProgressMeter - NC_035789.1:8514892 1129.7 4450610 3939.8 08:52:55.567 INFO ProgressMeter - NC_035789.1:8567163 1129.8 4450990 3939.6 08:53:02.839 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:53:05.721 INFO ProgressMeter - NC_035789.1:8656015 1130.0 4451630 3939.5 08:53:06.675 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:53:09.054 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:53:16.560 INFO ProgressMeter - NC_035789.1:8749120 1130.2 4452200 3939.4 08:53:27.326 INFO ProgressMeter - NC_035789.1:8791571 1130.4 4452490 3939.0 08:53:35.705 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:53:37.677 INFO ProgressMeter - NC_035789.1:8846432 1130.5 4452910 3938.8 08:53:44.636 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:53:47.815 INFO ProgressMeter - NC_035789.1:8946774 1130.7 4453480 3938.7 08:53:57.819 INFO ProgressMeter - NC_035789.1:9025830 1130.9 4454040 3938.6 08:54:02.604 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:54:07.952 INFO ProgressMeter - NC_035789.1:9086727 1131.0 4454400 3938.4 08:54:18.031 INFO ProgressMeter - NC_035789.1:9188281 1131.2 4455110 3938.4 08:54:20.968 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:54:28.516 INFO ProgressMeter - NC_035789.1:9280710 1131.4 4455690 3938.3 08:54:30.765 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:54:36.129 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:54:38.531 INFO ProgressMeter - NC_035789.1:9374572 1131.5 4456220 3938.2 08:54:48.840 INFO ProgressMeter - NC_035789.1:9436161 1131.7 4456700 3938.0 08:54:51.753 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:54:58.924 INFO ProgressMeter - NC_035789.1:9488589 1131.9 4457120 3937.8 08:55:09.022 INFO ProgressMeter - NC_035789.1:9525612 1132.0 4457380 3937.5 08:55:12.104 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:55:12.903 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:55:13.122 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:55:14.141 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:55:14.141 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:55:19.391 INFO ProgressMeter - NC_035789.1:9931047 1132.2 4459520 3938.7 08:55:29.384 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:55:29.521 INFO ProgressMeter - NC_035789.1:10165543 1132.4 4461000 3939.5 08:55:29.921 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:55:29.921 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:55:35.690 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:55:39.760 INFO ProgressMeter - NC_035789.1:10418414 1132.6 4462440 3940.1 08:55:42.758 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:55:47.931 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:55:50.152 INFO ProgressMeter - NC_035789.1:10503082 1132.7 4463010 3940.0 08:55:52.262 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:55:53.665 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:56:00.169 INFO ProgressMeter - NC_035789.1:10745664 1132.9 4464750 3941.0 08:56:08.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:56:08.539 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:56:10.229 INFO ProgressMeter - NC_035789.1:10947905 1133.1 4466030 3941.5 08:56:10.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:56:17.272 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:56:17.273 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:56:20.093 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:56:20.535 INFO ProgressMeter - NC_035789.1:11047419 1133.2 4466640 3941.5 08:56:24.883 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:56:30.544 INFO ProgressMeter - NC_035789.1:11257066 1133.4 4468040 3942.1 08:56:40.577 INFO ProgressMeter - NC_035789.1:11361501 1133.6 4468790 3942.2 08:56:50.013 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:56:50.014 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:56:50.750 INFO ProgressMeter - NC_035789.1:11417574 1133.7 4469220 3942.0 08:56:54.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:56:54.620 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:57:00.751 INFO ProgressMeter - NC_035789.1:11516939 1133.9 4469890 3942.0 08:57:04.340 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:57:04.340 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:57:06.959 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:57:08.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:57:08.801 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:57:10.969 INFO ProgressMeter - NC_035789.1:11606535 1134.1 4470490 3942.0 08:57:15.979 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:57:20.319 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:57:20.988 INFO ProgressMeter - NC_035789.1:11675718 1134.2 4471000 3941.8 08:57:21.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:57:21.056 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:57:31.259 INFO ProgressMeter - NC_035789.1:11789689 1134.4 4471800 3941.9 08:57:41.300 INFO ProgressMeter - NC_035789.1:11839885 1134.6 4472200 3941.7 08:57:50.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:57:50.778 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:57:51.489 INFO ProgressMeter - NC_035789.1:11929543 1134.8 4472800 3941.6 08:57:54.221 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:01.837 INFO ProgressMeter - NC_035789.1:12060541 1134.9 4473680 3941.8 08:58:06.435 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:11.852 INFO ProgressMeter - NC_035789.1:12222682 1135.1 4474670 3942.1 08:58:22.086 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:22.097 INFO ProgressMeter - NC_035789.1:12301428 1135.3 4475230 3942.0 08:58:29.734 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:29.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:29.895 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:30.320 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:30.320 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:31.393 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:32.139 INFO ProgressMeter - NC_035789.1:12512999 1135.4 4476470 3942.5 08:58:33.037 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:33.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:33.457 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:33.458 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:35.402 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:36.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:36.113 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:36.174 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:36.288 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:36.524 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:37.853 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:37.854 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:38.350 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:38.351 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:40.020 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:42.189 INFO ProgressMeter - NC_035789.1:12702549 1135.6 4477800 3943.1 08:58:46.128 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:50.091 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:50.806 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:52.438 INFO ProgressMeter - NC_035789.1:12904339 1135.8 4479120 3943.7 08:58:59.471 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:58:59.472 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:03.182 INFO ProgressMeter - NC_035789.1:13108961 1135.9 4480370 3944.2 08:59:04.907 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:04.907 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:05.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:05.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:05.076 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:05.245 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:09.062 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:14.587 INFO ProgressMeter - NC_035789.1:13246327 1136.1 4481220 3944.3 08:59:14.687 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:16.064 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:16.064 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:16.064 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:16.064 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:21.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:21.525 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:24.653 INFO ProgressMeter - NC_035789.1:13400028 1136.3 4482250 3944.6 08:59:34.720 INFO ProgressMeter - NC_035789.1:13560555 1136.5 4483200 3944.8 08:59:34.890 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:39.936 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:45.005 INFO ProgressMeter - NC_035789.1:13692967 1136.6 4483980 3944.9 08:59:45.889 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:46.596 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:47.327 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:49.449 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:55.724 INFO ProgressMeter - NC_035789.1:13905940 1136.8 4485290 3945.5 08:59:57.800 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:59.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 08:59:59.740 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:01.106 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:01.717 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:01.717 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:03.559 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:06.050 INFO ProgressMeter - NC_035789.1:14079303 1137.0 4486380 3945.8 09:00:12.787 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:14.680 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:16.308 INFO ProgressMeter - NC_035789.1:14255222 1137.2 4487360 3946.1 09:00:21.026 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:21.027 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:26.786 INFO ProgressMeter - NC_035789.1:14299545 1137.3 4487660 3945.7 09:00:33.587 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:34.619 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:36.810 INFO ProgressMeter - NC_035789.1:14519073 1137.5 4488910 3946.3 09:00:47.030 INFO ProgressMeter - NC_035789.1:14644824 1137.7 4489770 3946.4 09:00:49.365 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:57.033 INFO ProgressMeter - NC_035789.1:14724750 1137.8 4490300 3946.3 09:00:57.307 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:00:57.308 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:01:05.451 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:01:06.999 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:01:07.097 INFO ProgressMeter - NC_035789.1:14873819 1138.0 4491210 3946.5 09:01:09.038 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:01:17.660 INFO ProgressMeter - NC_035789.1:14996583 1138.2 4492040 3946.7 09:01:21.921 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:01:23.945 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:01:28.557 INFO ProgressMeter - NC_035789.1:15094450 1138.4 4492660 3946.6 09:01:31.923 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:01:33.268 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:01:38.982 INFO ProgressMeter - NC_035789.1:15198701 1138.5 4493360 3946.6 09:01:49.143 INFO ProgressMeter - NC_035789.1:15349226 1138.7 4494370 3946.9 09:01:49.254 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:01:59.332 INFO ProgressMeter - NC_035789.1:15461860 1138.9 4495100 3946.9 09:02:04.911 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:10.257 INFO ProgressMeter - NC_035789.1:15704708 1139.1 4496390 3947.4 09:02:11.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:11.305 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:20.846 INFO ProgressMeter - NC_035789.1:15797659 1139.2 4497010 3947.4 09:02:21.660 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:24.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:29.541 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:29.974 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:30.852 INFO ProgressMeter - NC_035789.1:15953639 1139.4 4497930 3947.6 09:02:31.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:31.952 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:32.223 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:32.934 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:33.005 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:33.637 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:33.812 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:36.820 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:36.820 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:40.941 INFO ProgressMeter - NC_035789.1:16072387 1139.6 4498720 3947.7 09:02:44.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:44.192 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:46.191 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:48.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:48.692 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:48.693 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:51.507 INFO ProgressMeter - NC_035789.1:16238636 1139.8 4499750 3948.0 09:02:52.809 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:54.434 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:56.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:56.672 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:58.497 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:58.498 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:02:58.522 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null 09:03:02.339 INFO ProgressMeter - NC_035789.1:16378451 1139.9 4500650 3948.2 09:03:02.901 WARN StrandBiasBySample - Annotation will not be calculated, genotype is not called or alleleLikelihoodMap is null slurmstepd: error: *** JOB 2647122 ON n2225 CANCELLED AT 2022-03-18T09:03:10 ***