Meth9_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 12868822 lines in total Total number of methylation call strings processed: 25737644 Final Cytosine Methylation Report ================================= Total number of C's analysed: 322173438 Total methylated C's in CpG context: 9109339 Total methylated C's in CHG context: 1006828 Total methylated C's in CHH context: 3894545 Total C to T conversions in CpG context: 35546849 Total C to T conversions in CHG context: 58281220 Total C to T conversions in CHH context: 214334657 C methylated in CpG context: 20.4% C methylated in CHG context: 1.7% C methylated in CHH context: 1.8%