Meth3_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 18438800 lines in total Total number of methylation call strings processed: 36877600 Final Cytosine Methylation Report ================================= Total number of C's analysed: 509040541 Total methylated C's in CpG context: 2676581 Total methylated C's in CHG context: 1103954 Total methylated C's in CHH context: 4177358 Total C to T conversions in CpG context: 75129411 Total C to T conversions in CHG context: 90598015 Total C to T conversions in CHH context: 335355222 C methylated in CpG context: 3.4% C methylated in CHG context: 1.2% C methylated in CHH context: 1.2%