Meth1_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 16148753 lines in total Total number of methylation call strings processed: 32297506 Final Cytosine Methylation Report ================================= Total number of C's analysed: 459787306 Total methylated C's in CpG context: 2262804 Total methylated C's in CHG context: 976977 Total methylated C's in CHH context: 3694400 Total C to T conversions in CpG context: 67292261 Total C to T conversions in CHG context: 81262298 Total C to T conversions in CHH context: 304298566 C methylated in CpG context: 3.3% C methylated in CHG context: 1.2% C methylated in CHH context: 1.2%