Meth16_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5122054 lines in total Total number of methylation call strings processed: 10244108 Final Cytosine Methylation Report ================================= Total number of C's analysed: 147847655 Total methylated C's in CpG context: 4054793 Total methylated C's in CHG context: 407487 Total methylated C's in CHH context: 1599349 Total C to T conversions in CpG context: 20702993 Total C to T conversions in CHG context: 25485006 Total C to T conversions in CHH context: 95598027 C methylated in CpG context: 16.4% C methylated in CHG context: 1.6% C methylated in CHH context: 1.6%