CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1538675 32635926 4.50 34174601 2 477221 72263 86.85 549484 3 37439 1898808 1.93 1936247 4 44541 3386640 1.30 3431181 5 68909 3350260 2.02 3419169 6 72664 3171535 2.24 3244199 7 69362 3146748 2.16 3216110 8 72075 3078048 2.29 3150123 9 85338 3132659 2.65 3217997 10 97166 3282106 2.88 3379272 11 59620 3244464 1.80 3304084 12 71034 3328164 2.09 3399198 13 60497 3006039 1.97 3066536 14 69559 3125448 2.18 3195007 15 77647 3205162 2.37 3282809 16 229231 3979448 5.45 4208679 17 92361 3582776 2.51 3675137 18 52521 2912508 1.77 2965029 19 44539 2828741 1.55 2873280 20 49623 2848883 1.71 2898506 21 62004 3260116 1.87 3322120 22 52831 3457952 1.50 3510783 23 52545 3368177 1.54 3420722 24 55747 2822123 1.94 2877870 25 56729 3059051 1.82 3115780 26 44471 2818685 1.55 2863156 27 42729 2996383 1.41 3039112 28 49722 3211925 1.52 3261647 29 88548 3700455 2.34 3789003 30 77041 3608045 2.09 3685086 31 102843 3789555 2.64 3892398 32 80248 3647635 2.15 3727883 33 91745 3773302 2.37 3865047 34 112166 4141745 2.64 4253911 35 50197 3184471 1.55 3234668 36 67955 3295270 2.02 3363225 37 50075 3053204 1.61 3103279 38 47777 3235041 1.46 3282818 39 60055 3291779 1.79 3351834 40 108411 3714346 2.84 3822757 41 87775 3507922 2.44 3595697 42 59658 2975930 1.97 3035588 43 52679 2937091 1.76 2989770 44 62961 2921074 2.11 2984035 45 58649 2888769 1.99 2947418 46 47624 2712466 1.73 2760090 47 54571 2940301 1.82 2994872 48 46802 2806670 1.64 2853472 49 47374 2651302 1.76 2698676 50 40294 2634448 1.51 2674742 51 92840 3480518 2.60 3573358 52 80934 3798428 2.09 3879362 53 56497 3196322 1.74 3252819 54 64928 2892870 2.20 2957798 55 38908 2502346 1.53 2541254 56 46290 2592062 1.75 2638352 57 39490 2524419 1.54 2563909 58 88215 3743341 2.30 3831556 59 72685 3579709 1.99 3652394 60 44372 2445155 1.78 2489527 61 46382 2480432 1.84 2526814 62 42014 2895202 1.43 2937216 63 44424 3009845 1.45 3054269 64 42465 2468893 1.69 2511358 65 40734 2406108 1.66 2446842 66 43902 2646854 1.63 2690756 67 39454 2617485 1.48 2656939 68 31682 2334329 1.34 2366011 69 35830 2467538 1.43 2503368 70 30338 2262847 1.32 2293185 71 29986 2168418 1.36 2198404 72 43762 2290019 1.88 2333781 73 35809 2312446 1.52 2348255 74 33516 2320669 1.42 2354185 75 30599 2213216 1.36 2243815 76 33311 2119205 1.55 2152516 77 34963 2115611 1.63 2150574 78 25403 1983777 1.26 2009180 79 25414 2024459 1.24 2049873 80 30533 2032763 1.48 2063296 81 33300 2129465 1.54 2162765 82 55774 3011223 1.82 3066997 83 46450 3158209 1.45 3204659 84 42588 2285422 1.83 2328010 85 31467 1964694 1.58 1996161 86 58360 3130761 1.83 3189121 87 75346 3469030 2.13 3544376 88 40583 2208892 1.80 2249475 89 32008 1960270 1.61 1992278 90 36319 2048490 1.74 2084809 91 31891 1955884 1.60 1987775 92 35574 2152915 1.63 2188489 93 61417 3232901 1.86 3294318 94 74128 2914077 2.48 2988205 95 48207 2028914 2.32 2077121 96 49711 1940192 2.50 1989903 97 35338 1774672 1.95 1810010 98 28995 1723737 1.65 1752732 99 39862 1975381 1.98 2015243 100 25510 1817537 1.38 1843047 101 26672 1761238 1.49 1787910 102 27519 1819484 1.49 1847003 103 26775 1689812 1.56 1716587 104 78939 2339348 3.26 2418287 105 61736 2174507 2.76 2236243 106 28141 1794697 1.54 1822838 107 34927 1759678 1.95 1794605 108 24759 1589274 1.53 1614033 109 26162 1661169 1.55 1687331 110 33893 1831880 1.82 1865773 111 64294 2199790 2.84 2264084 112 59250 1990952 2.89 2050202 113 60247 2295367 2.56 2355614 114 69467 2173314 3.10 2242781 115 55799 2291568 2.38 2347367 116 53816 2145535 2.45 2199351 117 29570 1542343 1.88 1571913 118 21000 1595363 1.30 1616363 119 22323 1519451 1.45 1541774 120 34421 1918402 1.76 1952823 121 30595 1724676 1.74 1755271 122 31476 2106249 1.47 2137725 123 44390 1895635 2.29 1940025 124 27051 1523896 1.74 1550947 125 19703 1408073 1.38 1427776 126 21926 1443934 1.50 1465860 127 22310 1401133 1.57 1423443 128 39142 2005569 1.91 2044711 129 53103 1973496 2.62 2026599 130 28643 1325458 2.12 1354101 131 17357 1211321 1.41 1228678 132 24742 1357148 1.79 1381890 133 19494 1277507 1.50 1297001 134 17698 1272287 1.37 1289985 135 21402 1346414 1.56 1367816 136 20343 1243643 1.61 1263986 137 18205 1231165 1.46 1249370 138 18838 1225090 1.51 1243928 139 28856 1396138 2.02 1424994 140 41504 1662218 2.44 1703722 141 24697 1239118 1.95 1263815 142 20803 1187448 1.72 1208251 143 20732 1270839 1.61 1291571 144 73689 2101913 3.39 2175602 145 40847 1271759 3.11 1312606 146 22320 1167919 1.88 1190239 147 17143 1075419 1.57 1092562 148 16485 388226 4.07 404711 149 120962 454780 21.01 575742 150 194712 439822 30.69 634534 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 124896 38574225 0.32 38699121 2 80668 195174 29.24 275842 3 427998 224681 65.58 652679 4 16642 3512255 0.47 3528897 5 14785 2526445 0.58 2541230 6 20101 2492706 0.80 2512807 7 19424 2703296 0.71 2722720 8 30501 2669629 1.13 2700130 9 26179 4409715 0.59 4435894 10 25457 3072591 0.82 3098048 11 19119 2535658 0.75 2554777 12 19125 2884610 0.66 2903735 13 17577 2957546 0.59 2975123 14 16967 2670650 0.63 2687617 15 18061 2930892 0.61 2948953 16 19209 3544461 0.54 3563670 17 28508 3513117 0.80 3541625 18 19527 2895269 0.67 2914796 19 21409 3176924 0.67 3198333 20 19825 2607188 0.75 2627013 21 24309 3118745 0.77 3143054 22 25015 3496017 0.71 3521032 23 24257 2824728 0.85 2848985 24 22074 2780077 0.79 2802151 25 23273 2952951 0.78 2976224 26 21515 2735552 0.78 2757067 27 20100 2979590 0.67 2999690 28 23596 3428207 0.68 3451803 29 26276 2944360 0.88 2970636 30 19676 2718873 0.72 2738549 31 40408 4335746 0.92 4376154 32 16245 2544796 0.63 2561041 33 21346 2678656 0.79 2700002 34 31122 4885880 0.63 4917002 35 16240 2611549 0.62 2627789 36 22782 2949665 0.77 2972447 37 18062 2949833 0.61 2967895 38 22867 3960525 0.57 3983392 39 18114 2920106 0.62 2938220 40 17933 2646403 0.67 2664336 41 17484 2790835 0.62 2808319 42 17237 2837872 0.60 2855109 43 18077 2936142 0.61 2954219 44 16855 2653627 0.63 2670482 45 19663 3085555 0.63 3105218 46 17324 2769293 0.62 2786617 47 17507 2643604 0.66 2661111 48 17129 2677406 0.64 2694535 49 17945 2649016 0.67 2666961 50 17006 2583375 0.65 2600381 51 20521 3358483 0.61 3379004 52 16571 2506901 0.66 2523472 53 16241 2428617 0.66 2444858 54 18791 3014404 0.62 3033195 55 16679 2607584 0.64 2624263 56 15888 2260087 0.70 2275975 57 16240 2492741 0.65 2508981 58 17572 2837801 0.62 2855373 59 16292 2697689 0.60 2713981 60 15692 2380889 0.65 2396581 61 17348 2563537 0.67 2580885 62 14422 2256304 0.64 2270726 63 16392 2620536 0.62 2636928 64 15678 2413236 0.65 2428914 65 15022 2167103 0.69 2182125 66 15111 2188353 0.69 2203464 67 14323 2190473 0.65 2204796 68 15303 2367775 0.64 2383078 69 14890 2203095 0.67 2217985 70 14607 2256031 0.64 2270638 71 13827 2113708 0.65 2127535 72 15491 2266673 0.68 2282164 73 14045 2155631 0.65 2169676 74 14005 2264563 0.61 2278568 75 15221 2288956 0.66 2304177 76 13696 1982715 0.69 1996411 77 13036 1953514 0.66 1966550 78 14425 2302033 0.62 2316458 79 14682 2310740 0.63 2325422 80 12730 1869897 0.68 1882627 81 14256 2091981 0.68 2106237 82 13415 2024697 0.66 2038112 83 13433 2074522 0.64 2087955 84 14630 2073935 0.70 2088565 85 13720 2062346 0.66 2076066 86 15916 2523724 0.63 2539640 87 14589 2050652 0.71 2065241 88 15261 2115724 0.72 2130985 89 13238 1869038 0.70 1882276 90 13280 1888491 0.70 1901771 91 11996 1798891 0.66 1810887 92 12218 1786915 0.68 1799133 93 15280 1990575 0.76 2005855 94 14659 2531390 0.58 2546049 95 13897 1966888 0.70 1980785 96 14948 2054864 0.72 2069812 97 12422 1901468 0.65 1913890 98 12298 1846108 0.66 1858406 99 12999 1917063 0.67 1930062 100 12413 1801368 0.68 1813781 101 11115 1656173 0.67 1667288 102 12163 1790757 0.67 1802920 103 13328 1961726 0.67 1975054 104 12631 1778013 0.71 1790644 105 13611 1950746 0.69 1964357 106 11791 1693148 0.69 1704939 107 17662 2800117 0.63 2817779 108 11513 1696235 0.67 1707748 109 12968 1747032 0.74 1760000 110 11751 1652938 0.71 1664689 111 20901 3363744 0.62 3384645 112 10712 1614860 0.66 1625572 113 10838 1467593 0.73 1478431 114 18670 2641051 0.70 2659721 115 11198 1512766 0.73 1523964 116 11954 1889602 0.63 1901556 117 10895 1520488 0.71 1531383 118 9716 1436223 0.67 1445939 119 10637 1538906 0.69 1549543 120 15076 1730603 0.86 1745679 121 10148 1490448 0.68 1500596 122 10254 1541224 0.66 1551478 123 14904 2233658 0.66 2248562 124 10434 1488319 0.70 1498753 125 9611 1398841 0.68 1408452 126 9964 1341879 0.74 1351843 127 9880 1372731 0.71 1382611 128 19742 1921409 1.02 1941151 129 11700 1833400 0.63 1845100 130 8973 1212125 0.73 1221098 131 8829 1208755 0.73 1217584 132 9395 1284345 0.73 1293740 133 9020 1228149 0.73 1237169 134 7824 1104478 0.70 1112302 135 8999 1257249 0.71 1266248 136 15092 2494931 0.60 2510023 137 9144 1292207 0.70 1301351 138 9946 1214089 0.81 1224035 139 8500 1194031 0.71 1202531 140 7820 1108840 0.70 1116660 141 7932 1130081 0.70 1138013 142 8064 1104473 0.72 1112537 143 8634 1125145 0.76 1133779 144 27580 2395111 1.14 2422691 145 9219 1169040 0.78 1178259 146 8660 1141068 0.75 1149728 147 7618 1010923 0.75 1018541 148 5531 381233 1.43 386764 149 8345 439671 1.86 448016 150 10639 569820 1.83 580459 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 83168 2557788 3.15 2640956 2 306651 7743705 3.81 8050356 3 306073 7062287 4.15 7368360 4 164660 10601129 1.53 10765789 5 212543 9740742 2.14 9953285 6 165746 10841626 1.51 11007372 7 163459 10171186 1.58 10334645 8 198368 10163733 1.91 10362101 9 158066 9771138 1.59 9929204 10 168953 10005197 1.66 10174150 11 162478 10077218 1.59 10239696 12 176082 10976233 1.58 11152315 13 238331 10729191 2.17 10967522 14 203128 9788223 2.03 9991351 15 171459 11273090 1.50 11444549 16 184734 10327674 1.76 10512408 17 174434 10758662 1.60 10933096 18 188341 11110231 1.67 11298572 19 189800 10227917 1.82 10417717 20 186990 10196166 1.80 10383156 21 166478 10566289 1.55 10732767 22 181481 10883089 1.64 11064570 23 205685 10367299 1.95 10572984 24 144206 10439535 1.36 10583741 25 144072 9906325 1.43 10050397 26 138397 9947194 1.37 10085591 27 140720 11081798 1.25 11222518 28 131484 10097314 1.29 10228798 29 127474 9504477 1.32 9631951 30 102633 10166084 1.00 10268717 31 99397 9660432 1.02 9759829 32 70026 9351255 0.74 9421281 33 69595 9563329 0.72 9632924 34 65932 9375308 0.70 9441240 35 65168 9687369 0.67 9752537 36 64042 9480603 0.67 9544645 37 65325 10291234 0.63 10356559 38 61248 9809082 0.62 9870330 39 59435 9052955 0.65 9112390 40 61989 9326180 0.66 9388169 41 56518 8982219 0.63 9038737 42 57731 9027787 0.64 9085518 43 59516 9759059 0.61 9818575 44 60695 9618886 0.63 9679581 45 57141 9257483 0.61 9314624 46 54050 8802497 0.61 8856547 47 54795 8684099 0.63 8738894 48 56819 9768718 0.58 9825537 49 53953 9472495 0.57 9526448 50 55069 8697261 0.63 8752330 51 57625 9152931 0.63 9210556 52 49118 8108432 0.60 8157550 53 50597 8246810 0.61 8297407 54 55392 9103017 0.60 9158409 55 50899 8729960 0.58 8780859 56 50655 8096509 0.62 8147164 57 51042 8381860 0.61 8432902 58 51420 8510366 0.60 8561786 59 48335 7769237 0.62 7817572 60 49364 8101518 0.61 8150882 61 47065 7698179 0.61 7745244 62 49343 8096208 0.61 8145551 63 52508 8610439 0.61 8662947 64 49423 7666008 0.64 7715431 65 48959 7899388 0.62 7948347 66 47015 7634893 0.61 7681908 67 48267 8242695 0.58 8290962 68 47111 8045391 0.58 8092502 69 46247 7751790 0.59 7798037 70 50893 8828738 0.57 8879631 71 46302 7161536 0.64 7207838 72 50208 8167139 0.61 8217347 73 48151 7776606 0.62 7824757 74 43934 7098345 0.62 7142279 75 48836 8233296 0.59 8282132 76 46257 7746736 0.59 7792993 77 47702 7908986 0.60 7956688 78 46529 7658909 0.60 7705438 79 44529 7030083 0.63 7074612 80 45207 7783702 0.58 7828909 81 40731 6764024 0.60 6804755 82 47091 7296902 0.64 7343993 83 41580 6736306 0.61 6777886 84 39853 6601800 0.60 6641653 85 40786 6784815 0.60 6825601 86 41357 6499528 0.63 6540885 87 44338 6318547 0.70 6362885 88 37604 6295809 0.59 6333413 89 40148 6397685 0.62 6437833 90 39657 6814349 0.58 6854006 91 40137 6748735 0.59 6788872 92 38766 6197603 0.62 6236369 93 39390 6216363 0.63 6255753 94 37497 6058702 0.62 6096199 95 36579 6081946 0.60 6118525 96 40058 6706603 0.59 6746661 97 39030 6617743 0.59 6656773 98 35315 5678275 0.62 5713590 99 37836 6179309 0.61 6217145 100 35636 5794627 0.61 5830263 101 38269 6200622 0.61 6238891 102 38353 6317488 0.60 6355841 103 34999 5512732 0.63 5547731 104 36941 5390126 0.68 5427067 105 44881 6424707 0.69 6469588 106 34414 5524759 0.62 5559173 107 37542 6031860 0.62 6069402 108 39182 6544428 0.60 6583610 109 33733 5445881 0.62 5479614 110 36446 5739204 0.63 5775650 111 32038 5333391 0.60 5365429 112 31745 5210321 0.61 5242066 113 30710 4923649 0.62 4954359 114 31983 5064638 0.63 5096621 115 35944 5913348 0.60 5949292 116 35780 5330537 0.67 5366317 117 32537 5544955 0.58 5577492 118 35594 6178476 0.57 6214070 119 31456 4868799 0.64 4900255 120 30071 4562697 0.65 4592768 121 31183 4890904 0.63 4922087 122 31166 5139551 0.60 5170717 123 31344 5290012 0.59 5321356 124 30969 5138793 0.60 5169762 125 28023 4239109 0.66 4267132 126 27197 4286214 0.63 4313411 127 30700 4873318 0.63 4904018 128 30832 4868812 0.63 4899644 129 29911 4707388 0.63 4737299 130 30764 5565394 0.55 5596158 131 27186 4308704 0.63 4335890 132 29357 4641823 0.63 4671180 133 30517 4836148 0.63 4866665 134 27118 4014264 0.67 4041382 135 26476 3922039 0.67 3948515 136 24355 3815782 0.63 3840137 137 29540 4532188 0.65 4561728 138 24816 3948408 0.62 3973224 139 32754 4753012 0.68 4785766 140 26202 3783797 0.69 3809999 141 26877 3828739 0.70 3855616 142 26499 3770493 0.70 3796992 143 29439 4243500 0.69 4272939 144 37471 4014262 0.92 4051733 145 25215 3655163 0.69 3680378 146 26553 3526443 0.75 3552996 147 23831 3504910 0.68 3528741 148 14857 1122696 1.31 1137553 149 11975 1114646 1.06 1126621 150 18370 1642929 1.11 1661299 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 602242 13882060 4.16 14484302 2 479153 40982 92.12 520135 3 10001 597896 1.65 607897 4 10284 1120070 0.91 1130354 5 12429 871805 1.41 884234 6 11369 844363 1.33 855732 7 11593 900908 1.27 912501 8 14620 913683 1.57 928303 9 25572 928054 2.68 953626 10 27180 942485 2.80 969665 11 10851 952493 1.13 963344 12 11211 973046 1.14 984257 13 10269 947229 1.07 957498 14 11811 950162 1.23 961973 15 32094 1005623 3.09 1037717 16 104813 981602 9.65 1086415 17 18852 939790 1.97 958642 18 10741 877474 1.21 888215 19 12214 879449 1.37 891663 20 14018 871936 1.58 885954 21 12244 884675 1.37 896919 22 10851 884053 1.21 894904 23 10492 857041 1.21 867533 24 8212 751956 1.08 760168 25 8589 826251 1.03 834840 26 8983 796989 1.11 805972 27 8317 775416 1.06 783733 28 7606 758108 0.99 765714 29 8326 780894 1.05 789220 30 10977 839137 1.29 850114 31 11698 895884 1.29 907582 32 9701 782180 1.23 791881 33 9298 785180 1.17 794478 34 10040 807230 1.23 817270 35 6963 678513 1.02 685476 36 7118 673693 1.05 680811 37 8808 743642 1.17 752450 38 8144 731992 1.10 740136 39 7642 690685 1.09 698327 40 9655 746992 1.28 756647 41 8946 700580 1.26 709526 42 7273 675185 1.07 682458 43 8135 692783 1.16 700918 44 7817 651015 1.19 658832 45 6967 578376 1.19 585343 46 6642 601128 1.09 607770 47 6493 631183 1.02 637676 48 7280 639552 1.13 646832 49 6368 602082 1.05 608450 50 6388 574188 1.10 580576 51 7367 644004 1.13 651371 52 7704 663379 1.15 671083 53 6119 574726 1.05 580845 54 5582 559738 0.99 565320 55 6012 562884 1.06 568896 56 5931 554715 1.06 560646 57 6101 546799 1.10 552900 58 7290 607944 1.18 615234 59 7839 637975 1.21 645814 60 4986 512938 0.96 517924 61 5138 530593 0.96 535731 62 5103 559777 0.90 564880 63 5703 573258 0.99 578961 64 5157 517091 0.99 522248 65 5053 488276 1.02 493329 66 4668 485282 0.95 489950 67 5064 528852 0.95 533916 68 5002 488466 1.01 493468 69 5032 458831 1.08 463863 70 5306 476871 1.10 482177 71 5832 478932 1.20 484764 72 5590 480312 1.15 485902 73 5737 479599 1.18 485336 74 5734 444303 1.27 450037 75 4501 448176 0.99 452677 76 4466 422366 1.05 426832 77 4416 403386 1.08 407802 78 3610 387937 0.92 391547 79 3528 381369 0.92 384897 80 3530 383027 0.91 386557 81 3897 405410 0.95 409307 82 4423 478178 0.92 482601 83 3960 478232 0.82 482192 84 3938 416438 0.94 420376 85 5211 406053 1.27 411264 86 6950 472817 1.45 479767 87 10996 507332 2.12 518328 88 6522 395964 1.62 402486 89 3927 378788 1.03 382715 90 3991 378817 1.04 382808 91 3787 345491 1.08 349278 92 3058 352514 0.86 355572 93 5415 459770 1.16 465185 94 9827 461018 2.09 470845 95 3764 351527 1.06 355291 96 3257 324630 0.99 327887 97 3109 320794 0.96 323903 98 3170 317377 0.99 320547 99 3239 361549 0.89 364788 100 3081 341095 0.90 344176 101 2976 303455 0.97 306431 102 2801 311721 0.89 314522 103 3075 320069 0.95 323144 104 5183 347691 1.47 352874 105 3830 315771 1.20 319601 106 2710 305094 0.88 307804 107 2879 285877 1.00 288756 108 2922 297206 0.97 300128 109 3069 319141 0.95 322210 110 3139 289861 1.07 293000 111 4874 331765 1.45 336639 112 9067 350683 2.52 359750 113 4390 314675 1.38 319065 114 7754 356837 2.13 364591 115 2741 280328 0.97 283069 116 6305 318281 1.94 324586 117 2432 250737 0.96 253169 118 2448 291499 0.83 293947 119 2227 247364 0.89 249591 120 2950 261112 1.12 264062 121 7765 256101 2.94 263866 122 2704 266464 1.00 269168 123 2334 248933 0.93 251267 124 2634 261423 1.00 264057 125 2681 233001 1.14 235682 126 2148 227715 0.93 229863 127 2295 236571 0.96 238866 128 3580 269701 1.31 273281 129 6098 306418 1.95 312516 130 2366 219696 1.07 222062 131 2241 207946 1.07 210187 132 1930 204747 0.93 206677 133 2040 211401 0.96 213441 134 2073 212322 0.97 214395 135 2069 212750 0.96 214819 136 2177 227279 0.95 229456 137 2179 228099 0.95 230278 138 2170 216144 0.99 218314 139 2522 223001 1.12 225523 140 4337 243167 1.75 247504 141 1921 211643 0.90 213564 142 1895 206370 0.91 208265 143 1783 210719 0.84 212502 144 7056 285476 2.41 292532 145 69939 190097 26.90 260036 146 1900 182188 1.03 184088 147 1707 169780 1.00 171487 148 1531 105069 1.44 106600 149 926 95526 0.96 96452 150 821 91024 0.89 91845 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 68495 12151515 0.56 12220010 2 35545 91259 28.03 126804 3 160207 79127 66.94 239334 4 6130 1168804 0.52 1174934 5 5762 811847 0.70 817609 6 8167 1031530 0.79 1039697 7 7976 847907 0.93 855883 8 16414 821877 1.96 838291 9 7802 1021636 0.76 1029438 10 7731 911556 0.84 919287 11 6041 826510 0.73 832551 12 5352 835422 0.64 840774 13 5985 943346 0.63 949331 14 5510 966385 0.57 971895 15 5677 817978 0.69 823655 16 6027 985515 0.61 991542 17 5640 855217 0.66 860857 18 5681 880175 0.64 885856 19 5448 920879 0.59 926327 20 5413 825439 0.65 830852 21 5369 810766 0.66 816135 22 5434 920598 0.59 926032 23 4776 729655 0.65 734431 24 4889 738385 0.66 743274 25 4411 732729 0.60 737140 26 4920 802105 0.61 807025 27 4696 778461 0.60 783157 28 4612 702586 0.65 707198 29 4581 714051 0.64 718632 30 4687 751551 0.62 756238 31 4518 774554 0.58 779072 32 4270 658707 0.64 662977 33 4225 682501 0.62 686726 34 4982 878137 0.56 883119 35 4189 681991 0.61 686180 36 4515 697591 0.64 702106 37 4357 729425 0.59 733782 38 4469 771754 0.58 776223 39 4232 660677 0.64 664909 40 4398 682540 0.64 686938 41 3869 631678 0.61 635547 42 4093 593086 0.69 597179 43 3805 644709 0.59 648514 44 3912 663096 0.59 667008 45 3907 638087 0.61 641994 46 3829 666439 0.57 670268 47 3786 595133 0.63 598919 48 3490 578777 0.60 582267 49 3546 561859 0.63 565405 50 3622 608586 0.59 612208 51 3598 622677 0.57 626275 52 3583 582197 0.61 585780 53 3531 572549 0.61 576080 54 3434 564399 0.60 567833 55 3519 568678 0.61 572197 56 3237 539935 0.60 543172 57 3290 553474 0.59 556764 58 3599 579861 0.62 583460 59 3269 513276 0.63 516545 60 3245 493077 0.65 496322 61 2836 469295 0.60 472131 62 2885 491732 0.58 494617 63 2960 509687 0.58 512647 64 3126 516370 0.60 519496 65 2966 496034 0.59 499000 66 2627 442709 0.59 445336 67 2870 494299 0.58 497169 68 2776 462658 0.60 465434 69 2858 444880 0.64 447738 70 2574 431355 0.59 433929 71 2502 437629 0.57 440131 72 2537 452971 0.56 455508 73 2490 403531 0.61 406021 74 2422 411979 0.58 414401 75 2921 418587 0.69 421508 76 2489 433746 0.57 436235 77 2496 409810 0.61 412306 78 2451 407730 0.60 410181 79 2357 405828 0.58 408185 80 2083 374871 0.55 376954 81 2426 439908 0.55 442334 82 2389 421569 0.56 423958 83 2355 400377 0.58 402732 84 2935 374657 0.78 377592 85 2204 384962 0.57 387166 86 2204 385445 0.57 387649 87 2271 381718 0.59 383989 88 2004 369462 0.54 371466 89 2112 343909 0.61 346021 90 2197 350595 0.62 352792 91 2018 376297 0.53 378315 92 1899 323075 0.58 324974 93 2099 349870 0.60 351969 94 1993 393479 0.50 395472 95 1755 310485 0.56 312240 96 2017 350516 0.57 352533 97 2029 363719 0.55 365748 98 1830 307956 0.59 309786 99 2013 328633 0.61 330646 100 1863 316953 0.58 318816 101 1713 298380 0.57 300093 102 1937 310947 0.62 312884 103 1849 326511 0.56 328360 104 1845 325097 0.56 326942 105 1683 292686 0.57 294369 106 1925 314674 0.61 316599 107 2068 393167 0.52 395235 108 1497 252162 0.59 253659 109 1663 302808 0.55 304471 110 1454 270004 0.54 271458 111 2623 481767 0.54 484390 112 1540 268820 0.57 270360 113 1499 244648 0.61 246147 114 2277 354654 0.64 356931 115 1414 264068 0.53 265482 116 1403 250282 0.56 251685 117 1466 243328 0.60 244794 118 1360 239291 0.57 240651 119 1477 258798 0.57 260275 120 1750 263633 0.66 265383 121 1681 259941 0.64 261622 122 1254 224929 0.55 226183 123 1608 284666 0.56 286274 124 1368 243021 0.56 244389 125 1139 198723 0.57 199862 126 1232 218904 0.56 220136 127 1289 226708 0.57 227997 128 1644 226288 0.72 227932 129 1235 216227 0.57 217462 130 1068 205066 0.52 206134 131 1301 242609 0.53 243910 132 1131 203023 0.55 204154 133 1138 206104 0.55 207242 134 1107 201079 0.55 202186 135 1309 238530 0.55 239839 136 1641 327233 0.50 328874 137 1165 186131 0.62 187296 138 1153 206479 0.56 207632 139 970 179198 0.54 180168 140 1064 204203 0.52 205267 141 1079 184757 0.58 185836 142 1010 182735 0.55 183745 143 1439 211126 0.68 212565 144 1227 314633 0.39 315860 145 1693 172443 0.97 174136 146 907 175385 0.51 176292 147 843 160821 0.52 161664 148 821 93450 0.87 94271 149 629 92480 0.68 93109 150 540 85152 0.63 85692 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 56185 933255 5.68 989440 2 69296 2183560 3.08 2252856 3 41561 2100499 1.94 2142060 4 32471 3708272 0.87 3740743 5 41403 3242514 1.26 3283917 6 24648 3378615 0.72 3403263 7 23228 3359374 0.69 3382602 8 26345 3295100 0.79 3321445 9 26220 3217978 0.81 3244198 10 23410 3181212 0.73 3204622 11 21179 3279563 0.64 3300742 12 30446 3248377 0.93 3278823 13 39771 3391809 1.16 3431580 14 21878 2963183 0.73 2985061 15 20919 3204520 0.65 3225439 16 20456 3115833 0.65 3136289 17 20553 3134361 0.65 3154914 18 19745 3103405 0.63 3123150 19 19959 3017217 0.66 3037176 20 18814 2866499 0.65 2885313 21 18728 2918433 0.64 2937161 22 18374 3023679 0.60 3042053 23 17947 2762594 0.65 2780541 24 18682 2849928 0.65 2868610 25 18086 2931406 0.61 2949492 26 16822 2651189 0.63 2668011 27 17286 2806847 0.61 2824133 28 17061 2747546 0.62 2764607 29 16621 2637195 0.63 2653816 30 16857 2743851 0.61 2760708 31 16323 2552212 0.64 2568535 32 16023 2437586 0.65 2453609 33 16174 2581056 0.62 2597230 34 16680 2646070 0.63 2662750 35 15864 2535271 0.62 2551135 36 15895 2479109 0.64 2495004 37 15450 2426680 0.63 2442130 38 15116 2399844 0.63 2414960 39 14880 2356333 0.63 2371213 40 15177 2346416 0.64 2361593 41 14360 2341859 0.61 2356219 42 14273 2258344 0.63 2272617 43 14616 2355629 0.62 2370245 44 13408 2213807 0.60 2227215 45 14369 2303884 0.62 2318253 46 13303 2152009 0.61 2165312 47 13539 2143543 0.63 2157082 48 13741 2248590 0.61 2262331 49 13598 2277361 0.59 2290959 50 12891 2104052 0.61 2116943 51 12751 2062785 0.61 2075536 52 12580 2052227 0.61 2064807 53 12317 1994778 0.61 2007095 54 12527 2030991 0.61 2043518 55 12051 2054036 0.58 2066087 56 12140 1924589 0.63 1936729 57 11821 1929523 0.61 1941344 58 11995 1928183 0.62 1940178 59 11246 1796659 0.62 1807905 60 11589 1894200 0.61 1905789 61 11098 1890784 0.58 1901882 62 11003 1854459 0.59 1865462 63 11453 1871843 0.61 1883296 64 10287 1758628 0.58 1768915 65 10915 1792035 0.61 1802950 66 10487 1768359 0.59 1778846 67 10472 1772627 0.59 1783099 68 10232 1717439 0.59 1727671 69 10408 1717196 0.60 1727604 70 10541 1809404 0.58 1819945 71 9910 1672064 0.59 1681974 72 9965 1729279 0.57 1739244 73 9868 1699876 0.58 1709744 74 9702 1583682 0.61 1593384 75 9763 1723160 0.56 1732923 76 9776 1680179 0.58 1689955 77 9381 1617869 0.58 1627250 78 9154 1592577 0.57 1601731 79 9139 1476745 0.62 1485884 80 8906 1519959 0.58 1528865 81 8544 1423431 0.60 1431975 82 8896 1494637 0.59 1503533 83 8514 1454302 0.58 1462816 84 8123 1382122 0.58 1390245 85 8207 1397553 0.58 1405760 86 7934 1350758 0.58 1358692 87 8708 1385292 0.62 1394000 88 7788 1348256 0.57 1356044 89 7696 1340811 0.57 1348507 90 7666 1298748 0.59 1306414 91 7899 1324314 0.59 1332213 92 7916 1296174 0.61 1304090 93 7355 1286297 0.57 1293652 94 7502 1260008 0.59 1267510 95 7345 1256668 0.58 1264013 96 7192 1288788 0.55 1295980 97 7317 1235848 0.59 1243165 98 6852 1169036 0.58 1175888 99 6930 1215528 0.57 1222458 100 6644 1197153 0.55 1203797 101 7034 1201870 0.58 1208904 102 6736 1183457 0.57 1190193 103 6394 1131478 0.56 1137872 104 6540 1114437 0.58 1120977 105 11598 1247801 0.92 1259399 106 6435 1084071 0.59 1090506 107 6431 1138182 0.56 1144613 108 6474 1147114 0.56 1153588 109 6228 1036057 0.60 1042285 110 5977 1045774 0.57 1051751 111 5640 1011914 0.55 1017554 112 5640 1024974 0.55 1030614 113 5739 967180 0.59 972919 114 5986 982772 0.61 988758 115 6091 1058955 0.57 1065046 116 5699 961705 0.59 967404 117 5378 943814 0.57 949192 118 5485 993643 0.55 999128 119 5380 902195 0.59 907575 120 5248 883204 0.59 888452 121 5158 913018 0.56 918176 122 5365 941214 0.57 946579 123 5169 914280 0.56 919449 124 4985 909082 0.55 914067 125 4601 821597 0.56 826198 126 4748 847687 0.56 852435 127 5539 918589 0.60 924128 128 4883 867821 0.56 872704 129 4875 869797 0.56 874672 130 4983 932084 0.53 937067 131 4371 772732 0.56 777103 132 4639 838572 0.55 843211 133 4697 836767 0.56 841464 134 4390 764829 0.57 769219 135 4302 757549 0.56 761851 136 4010 712559 0.56 716569 137 4716 813440 0.58 818156 138 4152 730280 0.57 734432 139 4437 761833 0.58 766270 140 4154 693985 0.60 698139 141 4027 686969 0.58 690996 142 3752 670566 0.56 674318 143 4147 738021 0.56 742168 144 3694 679430 0.54 683124 145 4281 686608 0.62 690889 146 3768 680617 0.55 684385 147 3368 644396 0.52 647764 148 3149 356187 0.88 359336 149 2445 339257 0.72 341702 150 2134 322545 0.66 324679