CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1544008 35134768 4.21 36678776 2 527574 88252 85.67 615826 3 38946 1984048 1.93 2022994 4 46088 3586296 1.27 3632384 5 71413 3476978 2.01 3548391 6 75073 3352489 2.19 3427562 7 70596 3312621 2.09 3383217 8 75033 3271992 2.24 3347025 9 88047 3340944 2.57 3428991 10 101849 3497409 2.83 3599258 11 63063 3445529 1.80 3508592 12 72749 3548226 2.01 3620975 13 62349 3221143 1.90 3283492 14 71661 3335581 2.10 3407242 15 82630 3429513 2.35 3512143 16 248756 4233357 5.55 4482113 17 99418 3765072 2.57 3864490 18 53926 3141758 1.69 3195684 19 46477 3031996 1.51 3078473 20 52570 3039873 1.70 3092443 21 61974 3465424 1.76 3527398 22 56298 3716503 1.49 3772801 23 57474 3577016 1.58 3634490 24 60624 3013653 1.97 3074277 25 60202 3262166 1.81 3322368 26 46086 2985577 1.52 3031663 27 44139 3200611 1.36 3244750 28 51180 3420133 1.47 3471313 29 95311 3903076 2.38 3998387 30 80345 3786584 2.08 3866929 31 112121 4003747 2.72 4115868 32 86834 3869715 2.19 3956549 33 95038 4031677 2.30 4126715 34 117891 4430577 2.59 4548468 35 53626 3422003 1.54 3475629 36 69979 3523486 1.95 3593465 37 53745 3257732 1.62 3311477 38 51699 3458893 1.47 3510592 39 62356 3534634 1.73 3596990 40 113228 3926154 2.80 4039382 41 91492 3729273 2.39 3820765 42 62720 3189159 1.93 3251879 43 54196 3151188 1.69 3205384 44 64412 3108002 2.03 3172414 45 59018 3081521 1.88 3140539 46 49769 2893736 1.69 2943505 47 57267 3138482 1.79 3195749 48 51279 3007630 1.68 3058909 49 50892 2839604 1.76 2890496 50 43841 2821810 1.53 2865651 51 95191 3692537 2.51 3787728 52 81169 4037733 1.97 4118902 53 58862 3412094 1.70 3470956 54 65458 3077995 2.08 3143453 55 43333 2685393 1.59 2728726 56 48479 2773212 1.72 2821691 57 43896 2723759 1.59 2767655 58 88584 3913086 2.21 4001670 59 73808 3769833 1.92 3843641 60 49645 2641208 1.84 2690853 61 49408 2678548 1.81 2727956 62 45256 3097956 1.44 3143212 63 48051 3216840 1.47 3264891 64 47581 2656424 1.76 2704005 65 43832 2576270 1.67 2620102 66 48733 2857919 1.68 2906652 67 43120 2844980 1.49 2888100 68 36691 2538679 1.42 2575370 69 40076 2680047 1.47 2720123 70 34978 2441578 1.41 2476556 71 33887 2319061 1.44 2352948 72 47675 2462848 1.90 2510523 73 39248 2489781 1.55 2529029 74 37139 2508957 1.46 2546096 75 35965 2386742 1.48 2422707 76 37425 2294057 1.61 2331482 77 39601 2287742 1.70 2327343 78 29313 2155853 1.34 2185166 79 29683 2199587 1.33 2229270 80 34352 2204747 1.53 2239099 81 37222 2292219 1.60 2329441 82 60348 3209618 1.85 3269966 83 51357 3368927 1.50 3420284 84 47551 2476513 1.88 2524064 85 35560 2112555 1.66 2148115 86 58084 3287359 1.74 3345443 87 79194 3682457 2.11 3761651 88 45830 2385996 1.88 2431826 89 36143 2102371 1.69 2138514 90 40119 2200446 1.79 2240565 91 36358 2111699 1.69 2148057 92 40903 2291895 1.75 2332798 93 65106 3485797 1.83 3550903 94 83225 3130045 2.59 3213270 95 55889 2161587 2.52 2217476 96 56868 2095400 2.64 2152268 97 40967 1897964 2.11 1938931 98 32952 1840287 1.76 1873239 99 46481 2117974 2.15 2164455 100 30025 1937829 1.53 1967854 101 29640 1876225 1.56 1905865 102 32024 1950619 1.62 1982643 103 30507 1800166 1.67 1830673 104 81220 2477001 3.17 2558221 105 69888 2300454 2.95 2370342 106 31852 1921211 1.63 1953063 107 40300 1897836 2.08 1938136 108 27817 1687367 1.62 1715184 109 30030 1762115 1.68 1792145 110 38287 1946451 1.93 1984738 111 69631 2321537 2.91 2391168 112 63913 2120843 2.93 2184756 113 68205 2423885 2.74 2492090 114 78605 2260279 3.36 2338884 115 63334 2424455 2.55 2487789 116 62461 2256268 2.69 2318729 117 34691 1641127 2.07 1675818 118 23588 1696377 1.37 1719965 119 25489 1586424 1.58 1611913 120 40019 2051190 1.91 2091209 121 34549 1809441 1.87 1843990 122 34980 2204814 1.56 2239794 123 48767 2024221 2.35 2072988 124 30600 1606809 1.87 1637409 125 23210 1466329 1.56 1489539 126 24774 1506774 1.62 1531548 127 24748 1464603 1.66 1489351 128 42915 2079492 2.02 2122407 129 56442 2044513 2.69 2100955 130 31826 1379643 2.25 1411469 131 20285 1262112 1.58 1282397 132 27749 1415836 1.92 1443585 133 22376 1324980 1.66 1347356 134 19853 1316192 1.49 1336045 135 23344 1396256 1.64 1419600 136 23290 1273417 1.80 1296707 137 20899 1254024 1.64 1274923 138 21449 1256638 1.68 1278087 139 29972 1426374 2.06 1456346 140 44092 1693992 2.54 1738084 141 27965 1278492 2.14 1306457 142 23672 1200871 1.93 1224543 143 23647 1292060 1.80 1315707 144 84082 2195935 3.69 2280017 145 44201 1320090 3.24 1364291 146 24426 1191294 2.01 1215720 147 18897 1101124 1.69 1120021 148 17843 395011 4.32 412854 149 136935 456536 23.07 593471 150 216011 438554 33.00 654565 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 132195 40210497 0.33 40342692 2 89277 232415 27.75 321692 3 476606 260938 64.62 737544 4 19160 3737723 0.51 3756883 5 17694 2712964 0.65 2730658 6 23585 2628109 0.89 2651694 7 22779 2859640 0.79 2882419 8 34880 2846220 1.21 2881100 9 30175 4612359 0.65 4642534 10 28037 3250002 0.86 3278039 11 22981 2694034 0.85 2717015 12 22334 3078724 0.72 3101058 13 20867 3171387 0.65 3192254 14 19874 2831275 0.70 2851149 15 21105 3095277 0.68 3116382 16 22532 3809744 0.59 3832276 17 32931 3744363 0.87 3777294 18 23129 3080844 0.75 3103973 19 25003 3403435 0.73 3428438 20 22832 2737432 0.83 2760264 21 27387 3346173 0.81 3373560 22 27764 3711803 0.74 3739567 23 27525 3006497 0.91 3034022 24 25158 2952014 0.85 2977172 25 26642 3142441 0.84 3169083 26 24456 2927331 0.83 2951787 27 23816 3163465 0.75 3187281 28 27137 3653758 0.74 3680895 29 26855 3145745 0.85 3172600 30 23629 2908886 0.81 2932515 31 41492 4623294 0.89 4664786 32 19862 2738926 0.72 2758788 33 25548 2873558 0.88 2899106 34 34476 5152302 0.66 5186778 35 20086 2814136 0.71 2834222 36 27544 3148243 0.87 3175787 37 21746 3153621 0.68 3175367 38 26865 4157328 0.64 4184193 39 21756 3121226 0.69 3142982 40 21982 2849709 0.77 2871691 41 21287 2980857 0.71 3002144 42 21041 3014461 0.69 3035502 43 21821 3181644 0.68 3203465 44 20790 2840780 0.73 2861570 45 23582 3311773 0.71 3335355 46 20465 2966666 0.69 2987131 47 21532 2828725 0.76 2850257 48 20957 2896217 0.72 2917174 49 22401 2863510 0.78 2885911 50 20859 2789233 0.74 2810092 51 24493 3561532 0.68 3586025 52 20532 2706680 0.75 2727212 53 19448 2612060 0.74 2631508 54 23391 3278954 0.71 3302345 55 21214 2837217 0.74 2858431 56 19464 2414451 0.80 2433915 57 20410 2698213 0.75 2718623 58 21450 3081592 0.69 3103042 59 20315 2898006 0.70 2918321 60 20301 2582754 0.78 2603055 61 21462 2809372 0.76 2830834 62 18352 2438434 0.75 2456786 63 20905 2864469 0.72 2885374 64 19749 2615249 0.75 2634998 65 18512 2332468 0.79 2350980 66 18834 2355340 0.79 2374174 67 18035 2372320 0.75 2390355 68 19324 2588627 0.74 2607951 69 18681 2392343 0.77 2411024 70 18668 2426464 0.76 2445132 71 17816 2294141 0.77 2311957 72 19449 2459953 0.78 2479402 73 18001 2339998 0.76 2357999 74 18074 2446986 0.73 2465060 75 18887 2505255 0.75 2524142 76 17203 2139226 0.80 2156429 77 16222 2101069 0.77 2117291 78 18547 2488354 0.74 2506901 79 18844 2491930 0.75 2510774 80 16256 2032860 0.79 2049116 81 18485 2251645 0.81 2270130 82 17248 2175894 0.79 2193142 83 17299 2235592 0.77 2252891 84 18226 2250582 0.80 2268808 85 17215 2214359 0.77 2231574 86 19369 2611022 0.74 2630391 87 18426 2228634 0.82 2247060 88 19310 2273886 0.84 2293196 89 16426 2027724 0.80 2044150 90 16690 2028720 0.82 2045410 91 15322 1940700 0.78 1956022 92 15742 1937164 0.81 1952906 93 19882 2158620 0.91 2178502 94 18237 2710538 0.67 2728775 95 16684 2090892 0.79 2107576 96 18865 2208324 0.85 2227189 97 15625 2038207 0.76 2053832 98 15744 1991889 0.78 2007633 99 16694 2055744 0.81 2072438 100 15632 1930985 0.80 1946617 101 14197 1769893 0.80 1784090 102 15425 1912401 0.80 1927826 103 16731 2104218 0.79 2120949 104 15645 1895811 0.82 1911456 105 16523 2080405 0.79 2096928 106 14761 1801056 0.81 1815817 107 22235 2937330 0.75 2959565 108 15259 1839359 0.82 1854618 109 16485 1855583 0.88 1872068 110 15066 1762148 0.85 1777214 111 25236 3487784 0.72 3513020 112 13682 1739927 0.78 1753609 113 13546 1555486 0.86 1569032 114 22978 2740217 0.83 2763195 115 14184 1609979 0.87 1624163 116 15052 2037022 0.73 2052074 117 14005 1629591 0.85 1643596 118 12650 1513841 0.83 1526491 119 13687 1613022 0.84 1626709 120 19897 1849505 1.06 1869402 121 12989 1560367 0.83 1573356 122 12971 1614104 0.80 1627075 123 18051 2313656 0.77 2331707 124 13226 1566324 0.84 1579550 125 12002 1475927 0.81 1487929 126 12721 1395412 0.90 1408133 127 12456 1437579 0.86 1450035 128 23785 2032280 1.16 2056065 129 14807 1932270 0.76 1947077 130 11536 1257451 0.91 1268987 131 11139 1235502 0.89 1246641 132 11890 1329848 0.89 1341738 133 11317 1264471 0.89 1275788 134 9908 1136947 0.86 1146855 135 11126 1290561 0.85 1301687 136 18670 2574573 0.72 2593243 137 11410 1357527 0.83 1368937 138 12249 1240394 0.98 1252643 139 10531 1238144 0.84 1248675 140 9723 1113273 0.87 1122996 141 10194 1153807 0.88 1164001 142 10146 1125404 0.89 1135550 143 10864 1133353 0.95 1144217 144 32132 2437978 1.30 2470110 145 11418 1215479 0.93 1226897 146 10382 1161808 0.89 1172190 147 9694 1033704 0.93 1043398 148 6951 396349 1.72 403300 149 10293 456920 2.20 467213 150 12425 579886 2.10 592311 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 106964 2737194 3.76 2844158 2 333958 8113457 3.95 8447415 3 319540 7439346 4.12 7758886 4 181122 11257030 1.58 11438152 5 226768 10349800 2.14 10576568 6 180202 11440022 1.55 11620224 7 174108 10769020 1.59 10943128 8 210529 10761533 1.92 10972062 9 170076 10367042 1.61 10537118 10 178261 10569687 1.66 10747948 11 173944 10606633 1.61 10780577 12 185995 11566948 1.58 11752943 13 236501 11342825 2.04 11579326 14 204964 10376857 1.94 10581821 15 183172 11877601 1.52 12060773 16 193049 10910775 1.74 11103824 17 187185 11386212 1.62 11573397 18 193530 11746897 1.62 11940427 19 200738 10832708 1.82 11033446 20 198041 10784241 1.80 10982282 21 176594 11157808 1.56 11334402 22 192411 11519390 1.64 11711801 23 205131 10946402 1.84 11151533 24 155613 11035296 1.39 11190909 25 150973 10493567 1.42 10644540 26 141640 10536713 1.33 10678353 27 149492 11690715 1.26 11840207 28 130210 10666949 1.21 10797159 29 133418 10076727 1.31 10210145 30 112376 10768855 1.03 10881231 31 109308 10268688 1.05 10377996 32 83724 9954771 0.83 10038495 33 82804 10132559 0.81 10215363 34 78867 9936603 0.79 10015470 35 77732 10267653 0.75 10345385 36 76482 10084102 0.75 10160584 37 78559 10924408 0.71 11002967 38 75041 10396363 0.72 10471404 39 72836 9604039 0.75 9676875 40 74141 9927532 0.74 10001673 41 68173 9595220 0.71 9663393 42 71633 9616548 0.74 9688181 43 72582 10307296 0.70 10379878 44 72455 10230350 0.70 10302805 45 69856 9884056 0.70 9953912 46 67476 9395653 0.71 9463129 47 68122 9274843 0.73 9342965 48 70024 10380268 0.67 10450292 49 67075 10090907 0.66 10157982 50 67753 9246640 0.73 9314393 51 71871 9813145 0.73 9885016 52 61812 8625031 0.71 8686843 53 64200 8798929 0.72 8863129 54 67873 9695161 0.70 9763034 55 63667 9288735 0.68 9352402 56 63285 8640704 0.73 8703989 57 64098 8926792 0.71 8990890 58 63898 9088817 0.70 9152715 59 60470 8288179 0.72 8348649 60 62077 8603586 0.72 8665663 61 59024 8183427 0.72 8242451 62 61564 8605742 0.71 8667306 63 63564 9216575 0.68 9280139 64 62064 8187079 0.75 8249143 65 62696 8395534 0.74 8458230 66 60062 8141449 0.73 8201511 67 60570 8746163 0.69 8806733 68 59214 8574215 0.69 8633429 69 58846 8215679 0.71 8274525 70 64583 9372656 0.68 9437239 71 58968 7626558 0.77 7685526 72 62474 8649924 0.72 8712398 73 60471 8277256 0.73 8337727 74 55294 7560440 0.73 7615734 75 61158 8666705 0.70 8727863 76 59428 8196407 0.72 8255835 77 59587 8343394 0.71 8402981 78 58754 8129019 0.72 8187773 79 55858 7474510 0.74 7530368 80 57173 8224194 0.69 8281367 81 52040 7161006 0.72 7213046 82 57491 7752488 0.74 7809979 83 52948 7122076 0.74 7175024 84 51210 6974244 0.73 7025454 85 51929 7199612 0.72 7251541 86 52478 6880846 0.76 6933324 87 55331 6634708 0.83 6690039 88 48345 6628524 0.72 6676869 89 50576 6767928 0.74 6818504 90 50337 7172639 0.70 7222976 91 49983 7102305 0.70 7152288 92 49394 6511659 0.75 6561053 93 49649 6517694 0.76 6567343 94 46975 6351580 0.73 6398555 95 46519 6384759 0.72 6431278 96 50238 7030030 0.71 7080268 97 49263 6913388 0.71 6962651 98 45094 5961320 0.75 6006414 99 48266 6516001 0.74 6564267 100 44326 6028066 0.73 6072392 101 46903 6464416 0.72 6511319 102 47855 6590286 0.72 6638141 103 44245 5726342 0.77 5770587 104 45498 5609906 0.80 5655404 105 53926 6654421 0.80 6708347 106 42427 5733995 0.73 5776422 107 47600 6227117 0.76 6274717 108 48635 6828940 0.71 6877575 109 43242 5686493 0.75 5729735 110 46393 5895447 0.78 5941840 111 41265 5532864 0.74 5574129 112 39997 5355719 0.74 5395716 113 38824 5077715 0.76 5116539 114 39742 5232666 0.75 5272408 115 44906 6117868 0.73 6162774 116 44026 5521860 0.79 5565886 117 40975 5706952 0.71 5747927 118 43657 6338932 0.68 6382589 119 39283 5000189 0.78 5039472 120 37150 4653339 0.79 4690489 121 39329 4999637 0.78 5038966 122 38928 5241717 0.74 5280645 123 39678 5409616 0.73 5449294 124 37498 5218655 0.71 5256153 125 34558 4293492 0.80 4328050 126 33710 4312558 0.78 4346268 127 38911 4928399 0.78 4967310 128 38851 4940998 0.78 4979849 129 36785 4718299 0.77 4755084 130 37177 5634767 0.66 5671944 131 33509 4345644 0.77 4379153 132 36505 4663424 0.78 4699929 133 36778 4864303 0.75 4901081 134 33639 4024855 0.83 4058494 135 33312 3903034 0.85 3936346 136 30356 3796172 0.79 3826528 137 35802 4507444 0.79 4543246 138 31024 3925840 0.78 3956864 139 40265 4722288 0.85 4762553 140 32696 3752108 0.86 3784804 141 32734 3791916 0.86 3824650 142 32043 3730141 0.85 3762184 143 35185 4162704 0.84 4197889 144 43025 3922647 1.08 3965672 145 31057 3585911 0.86 3616968 146 32115 3448159 0.92 3480274 147 29091 3440320 0.84 3469411 148 17944 1108731 1.59 1126675 149 15896 1107798 1.41 1123694 150 22724 1602779 1.40 1625503 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 628916 13916835 4.32 14545751 2 561912 51494 91.61 613406 3 10004 584806 1.68 594810 4 10624 1103485 0.95 1114109 5 14395 854565 1.66 868960 6 12395 824789 1.48 837184 7 12076 876814 1.36 888890 8 16056 893359 1.77 909415 9 26299 908736 2.81 935035 10 28293 916971 2.99 945264 11 11477 931813 1.22 943290 12 12254 951447 1.27 963701 13 11568 928375 1.23 939943 14 12686 930194 1.35 942880 15 33355 986429 3.27 1019784 16 109075 942741 10.37 1051816 17 19901 913423 2.13 933324 18 11533 853703 1.33 865236 19 12890 856128 1.48 869018 20 13838 839979 1.62 853817 21 12414 850549 1.44 862963 22 11928 861681 1.37 873609 23 11685 837770 1.38 849455 24 8816 713186 1.22 722002 25 8619 795486 1.07 804105 26 9186 756666 1.20 765852 27 8617 740412 1.15 749029 28 7920 721511 1.09 729431 29 8942 731581 1.21 740523 30 11838 809338 1.44 821176 31 11442 852562 1.32 864004 32 10729 742880 1.42 753609 33 9402 742005 1.25 751407 34 11229 776837 1.42 788066 35 7666 635381 1.19 643047 36 7489 629881 1.17 637370 37 9308 689483 1.33 698791 38 8523 686967 1.23 695490 39 7283 642221 1.12 649504 40 9331 681714 1.35 691045 41 9149 662360 1.36 671509 42 7099 630534 1.11 637633 43 7734 641064 1.19 648798 44 7877 598680 1.30 606557 45 6994 529218 1.30 536212 46 6768 546572 1.22 553340 47 6710 577119 1.15 583829 48 7197 582399 1.22 589596 49 6520 549822 1.17 556342 50 6382 521680 1.21 528062 51 7283 578391 1.24 585674 52 7837 619951 1.25 627788 53 6394 515609 1.22 522003 54 5696 502639 1.12 508335 55 5790 513055 1.12 518845 56 5688 497317 1.13 503005 57 6189 489057 1.25 495246 58 6731 544240 1.22 550971 59 7883 593832 1.31 601715 60 5008 457652 1.08 462660 61 5267 470147 1.11 475414 62 5221 503225 1.03 508446 63 5636 517959 1.08 523595 64 5076 458733 1.09 463809 65 5130 426976 1.19 432106 66 4556 425210 1.06 429766 67 5032 466541 1.07 471573 68 4721 429616 1.09 434337 69 4878 401767 1.20 406645 70 4957 415646 1.18 420603 71 5532 410757 1.33 416289 72 5284 410913 1.27 416197 73 5008 406206 1.22 411214 74 5561 377760 1.45 383321 75 4576 382361 1.18 386937 76 4281 363091 1.17 367372 77 4162 345682 1.19 349844 78 3452 331873 1.03 335325 79 3653 323391 1.12 327044 80 3391 326602 1.03 329993 81 3587 340053 1.04 343640 82 4128 404168 1.01 408296 83 3983 424446 0.93 428429 84 3674 348949 1.04 352623 85 4808 338718 1.40 343526 86 6549 414638 1.55 421187 87 10225 457466 2.19 467691 88 6673 332776 1.97 339449 89 3633 310912 1.16 314545 90 3752 314046 1.18 317798 91 3790 288665 1.30 292455 92 2965 292663 1.00 295628 93 5251 415263 1.25 420514 94 8979 404111 2.17 413090 95 3452 290771 1.17 294223 96 2933 262995 1.10 265928 97 2775 261669 1.05 264444 98 2681 253036 1.05 255717 99 2993 295182 1.00 298175 100 2816 275251 1.01 278067 101 2745 240711 1.13 243456 102 2446 248853 0.97 251299 103 2730 257115 1.05 259845 104 5031 296237 1.67 301268 105 3236 251599 1.27 254835 106 2195 243757 0.89 245952 107 2707 226081 1.18 228788 108 2482 230655 1.06 233137 109 2754 252083 1.08 254837 110 2580 224574 1.14 227154 111 5392 274591 1.93 279983 112 9358 295315 3.07 304673 113 4599 260941 1.73 265540 114 8434 296186 2.77 304620 115 2635 219939 1.18 222574 116 7233 263650 2.67 270883 117 1999 191462 1.03 193461 118 2045 241066 0.84 243111 119 1873 186222 1.00 188095 120 2664 200603 1.31 203267 121 8639 194564 4.25 203203 122 2374 198821 1.18 201195 123 2086 185471 1.11 187557 124 2049 194779 1.04 196828 125 2172 174782 1.23 176954 126 1776 169617 1.04 171393 127 1827 178302 1.01 180129 128 3780 218662 1.70 222442 129 6574 249561 2.57 256135 130 1896 160374 1.17 162270 131 1787 151891 1.16 153678 132 1682 150341 1.11 152023 133 1748 156591 1.10 158339 134 1748 157619 1.10 159367 135 1641 154190 1.05 155831 136 1813 166184 1.08 167997 137 1670 163155 1.01 164825 138 1736 159640 1.08 161376 139 2038 165095 1.22 167133 140 3931 194673 1.98 198604 141 1692 153553 1.09 155245 142 1473 145201 1.00 146674 143 1419 150718 0.93 152137 144 6699 229030 2.84 235729 145 74551 135139 35.55 209690 146 1683 130693 1.27 132376 147 1346 118307 1.12 119653 148 1366 76793 1.75 78159 149 790 68504 1.14 69294 150 707 64676 1.08 65383 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 77627 11825007 0.65 11902634 2 44519 113751 28.13 158270 3 185310 87558 67.91 272868 4 6674 1149361 0.58 1156035 5 6232 801321 0.77 807553 6 9756 1010095 0.96 1019851 7 9213 831868 1.10 841081 8 18033 797202 2.21 815235 9 8668 988777 0.87 997445 10 8973 897500 0.99 906473 11 6954 793855 0.87 800809 12 6427 809700 0.79 816127 13 6953 914183 0.75 921136 14 6646 924736 0.71 931382 15 6720 783969 0.85 790689 16 7162 967855 0.73 975017 17 6625 807080 0.81 813705 18 6504 840753 0.77 847257 19 6592 895461 0.73 902053 20 6215 778716 0.79 784931 21 6230 780484 0.79 786714 22 6466 893625 0.72 900091 23 5895 697076 0.84 702971 24 5731 696990 0.82 702721 25 5277 692379 0.76 697656 26 5596 758048 0.73 763644 27 5453 740644 0.73 746097 28 5436 660822 0.82 666258 29 5273 673434 0.78 678707 30 5414 702010 0.77 707424 31 5369 736243 0.72 741612 32 4904 621020 0.78 625924 33 5175 642436 0.80 647611 34 5634 828243 0.68 833877 35 4828 633757 0.76 638585 36 5104 644993 0.79 650097 37 4981 674131 0.73 679112 38 5040 714803 0.70 719843 39 4962 616266 0.80 621228 40 4822 626305 0.76 631127 41 4484 575807 0.77 580291 42 4322 545734 0.79 550056 43 4403 597723 0.73 602126 44 4407 607084 0.72 611491 45 4256 580445 0.73 584701 46 4398 602440 0.72 606838 47 4343 540906 0.80 545249 48 4089 522235 0.78 526324 49 3999 513535 0.77 517534 50 4133 548947 0.75 553080 51 4013 571783 0.70 575796 52 4055 519606 0.77 523661 53 3798 514889 0.73 518687 54 4026 503739 0.79 507765 55 3834 514729 0.74 518563 56 3534 469502 0.75 473036 57 3616 486461 0.74 490077 58 3918 522512 0.74 526430 59 3522 470755 0.74 474277 60 3560 432396 0.82 435956 61 3105 410334 0.75 413439 62 3120 428607 0.72 431727 63 3203 451556 0.70 454759 64 3332 454904 0.73 458236 65 3212 436199 0.73 439411 66 2974 381343 0.77 384317 67 3264 430190 0.75 433454 68 3043 398771 0.76 401814 69 2897 386196 0.74 389093 70 2895 369045 0.78 371940 71 2786 372946 0.74 375732 72 2798 392632 0.71 395430 73 2616 344388 0.75 347004 74 2594 351264 0.73 353858 75 2886 352780 0.81 355666 76 2701 365595 0.73 368296 77 2599 342963 0.75 345562 78 2497 344685 0.72 347182 79 2486 339835 0.73 342321 80 2398 314306 0.76 316704 81 2680 370037 0.72 372717 82 2397 348580 0.68 350977 83 2450 338028 0.72 340478 84 2792 317187 0.87 319979 85 2387 317150 0.75 319537 86 2389 334478 0.71 336867 87 2437 316650 0.76 319087 88 1988 300105 0.66 302093 89 2122 281389 0.75 283511 90 2242 289275 0.77 291517 91 2152 308219 0.69 310371 92 2063 262642 0.78 264705 93 2120 287012 0.73 289132 94 2133 333661 0.64 335794 95 1862 251121 0.74 252983 96 2038 281596 0.72 283634 97 2030 297081 0.68 299111 98 1845 245463 0.75 247308 99 2042 260076 0.78 262118 100 1928 255916 0.75 257844 101 1766 236468 0.74 238234 102 1835 248884 0.73 250719 103 1743 262670 0.66 264413 104 1910 261997 0.72 263907 105 1725 229894 0.74 231619 106 1865 244535 0.76 246400 107 2221 347592 0.63 349813 108 1477 194697 0.75 196174 109 1618 231875 0.69 233493 110 1455 210650 0.69 212105 111 2709 419000 0.64 421709 112 1497 206431 0.72 207928 113 1454 186127 0.78 187581 114 2416 293148 0.82 295564 115 1381 199172 0.69 200553 116 1367 190071 0.71 191438 117 1422 186360 0.76 187782 118 1216 178423 0.68 179639 119 1291 194388 0.66 195679 120 1658 201968 0.81 203626 121 1568 196375 0.79 197943 122 1316 164978 0.79 166294 123 1486 210750 0.70 212236 124 1316 180324 0.72 181640 125 1171 145945 0.80 147116 126 1152 161147 0.71 162299 127 1287 169885 0.75 171172 128 1542 171262 0.89 172804 129 1153 162218 0.71 163371 130 1070 149935 0.71 151005 131 1171 177537 0.66 178708 132 982 145970 0.67 146952 133 1178 149700 0.78 150878 134 1060 145970 0.72 147030 135 1192 174384 0.68 175576 136 1735 285173 0.60 286908 137 954 133587 0.71 134541 138 1085 147465 0.73 148550 139 946 126329 0.74 127275 140 995 148800 0.66 149795 141 890 133268 0.66 134158 142 936 128303 0.72 129239 143 1253 152507 0.81 153760 144 1142 271917 0.42 273059 145 1738 121772 1.41 123510 146 823 124790 0.66 125613 147 872 112191 0.77 113063 148 699 66881 1.03 67580 149 614 64777 0.94 65391 150 441 58070 0.75 58511 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 77274 988651 7.25 1065925 2 85192 2162355 3.79 2247547 3 44600 2061495 2.12 2106095 4 39086 3609320 1.07 3648406 5 46778 3155519 1.46 3202297 6 29086 3283846 0.88 3312932 7 27244 3265523 0.83 3292767 8 30862 3212015 0.95 3242877 9 30677 3113346 0.98 3144023 10 27352 3072026 0.88 3099378 11 25206 3149046 0.79 3174252 12 33664 3127140 1.07 3160804 13 43271 3263540 1.31 3306811 14 26003 2844130 0.91 2870133 15 24642 3069241 0.80 3093883 16 23882 2970517 0.80 2994399 17 24147 3005623 0.80 3029770 18 22752 2927714 0.77 2950466 19 23289 2850500 0.81 2873789 20 22178 2708000 0.81 2730178 21 22013 2753115 0.79 2775128 22 22006 2845695 0.77 2867701 23 20849 2602261 0.79 2623110 24 21578 2670479 0.80 2692057 25 20818 2740297 0.75 2761115 26 19694 2460615 0.79 2480309 27 20027 2626214 0.76 2646241 28 19310 2548274 0.75 2567584 29 18958 2430632 0.77 2449590 30 19222 2538565 0.75 2557787 31 18903 2346013 0.80 2364916 32 18556 2231075 0.82 2249631 33 18407 2360119 0.77 2378526 34 18748 2431307 0.77 2450055 35 17963 2334939 0.76 2352902 36 18175 2254505 0.80 2272680 37 17483 2210537 0.78 2228020 38 17337 2178889 0.79 2196226 39 16559 2123780 0.77 2140339 40 17342 2115609 0.81 2132951 41 16474 2108180 0.78 2124654 42 15853 2025786 0.78 2041639 43 16695 2121868 0.78 2138563 44 15525 1999863 0.77 2015388 45 16133 2047793 0.78 2063926 46 15391 1919975 0.80 1935366 47 15338 1913923 0.80 1929261 48 15323 2003672 0.76 2018995 49 15218 2033750 0.74 2048968 50 14286 1851337 0.77 1865623 51 13986 1811272 0.77 1825258 52 14043 1800871 0.77 1814914 53 13744 1744115 0.78 1757859 54 13812 1787836 0.77 1801648 55 13696 1807345 0.75 1821041 56 12586 1661976 0.75 1674562 57 12930 1671247 0.77 1684177 58 12955 1666236 0.77 1679191 59 12277 1548275 0.79 1560552 60 12467 1611746 0.77 1624213 61 12219 1609391 0.75 1621610 62 12180 1599215 0.76 1611395 63 12172 1595504 0.76 1607676 64 11514 1495154 0.76 1506668 65 12213 1537224 0.79 1549437 66 10906 1503408 0.72 1514314 67 11065 1495785 0.73 1506850 68 10670 1452880 0.73 1463550 69 10940 1456796 0.75 1467736 70 11168 1541437 0.72 1552605 71 10742 1401497 0.76 1412239 72 10583 1456696 0.72 1467279 73 10285 1443875 0.71 1454160 74 10350 1318530 0.78 1328880 75 10520 1467367 0.71 1477887 76 10315 1416772 0.72 1427087 77 9612 1358919 0.70 1368531 78 9670 1331804 0.72 1341474 79 9367 1221757 0.76 1231124 80 9149 1247973 0.73 1257122 81 9079 1160873 0.78 1169952 82 9277 1227560 0.75 1236837 83 9011 1197259 0.75 1206270 84 8379 1110825 0.75 1119204 85 8421 1122334 0.74 1130755 86 8372 1088464 0.76 1096836 87 8629 1114829 0.77 1123458 88 8029 1069769 0.74 1077798 89 8007 1071269 0.74 1079276 90 7831 1041934 0.75 1049765 91 7911 1064583 0.74 1072494 92 7989 1024630 0.77 1032619 93 7562 1019478 0.74 1027040 94 7349 990262 0.74 997611 95 7513 986007 0.76 993520 96 7328 1037835 0.70 1045163 97 7420 988098 0.75 995518 98 6776 917301 0.73 924077 99 7009 953870 0.73 960879 100 7153 932603 0.76 939756 101 7134 941102 0.75 948236 102 6646 931101 0.71 937747 103 6554 866017 0.75 872571 104 6288 858173 0.73 864461 105 11586 993752 1.15 1005338 106 6002 822808 0.72 828810 107 6592 888189 0.74 894781 108 6490 913059 0.71 919549 109 6221 789647 0.78 795868 110 5990 809949 0.73 815939 111 5631 756836 0.74 762467 112 5589 773017 0.72 778606 113 5544 721267 0.76 726811 114 5777 729669 0.79 735446 115 5739 790072 0.72 795811 116 5690 712031 0.79 717721 117 5093 695674 0.73 700767 118 5280 733660 0.71 738940 119 5028 659095 0.76 664123 120 4694 642124 0.73 646818 121 4877 670656 0.72 675533 122 5162 708856 0.72 714018 123 4782 688854 0.69 693636 124 4651 659352 0.70 664003 125 4456 591205 0.75 595661 126 4522 605192 0.74 609714 127 5149 685541 0.75 690690 128 4497 643819 0.69 648316 129 4393 640412 0.68 644805 130 4637 691842 0.67 696479 131 4120 545621 0.75 549741 132 4339 596251 0.72 600590 133 4163 610206 0.68 614369 134 3853 543562 0.70 547415 135 4016 531928 0.75 535944 136 3763 495051 0.75 498814 137 4067 590548 0.68 594615 138 3879 506131 0.76 510010 139 4115 542378 0.75 546493 140 3685 478772 0.76 482457 141 3505 470651 0.74 474156 142 3551 460487 0.77 464038 143 3903 531401 0.73 535304 144 3326 462907 0.71 466233 145 3798 473570 0.80 477368 146 3401 463419 0.73 466820 147 3102 441385 0.70 444487 148 2853 243522 1.16 246375 149 2281 233385 0.97 235666 150 1961 221147 0.88 223108